Chy8G146070 (gene) Cucumber (hystrix) v1

Overview


Name	Chy8G146070
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH08: 29304 .. 29639 (-)
RNA-Seq Expression	Chy8G146070
Synteny	Chy8G146070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGCATCGGCTCACTTCAAGGAGGAGGTCGGCTTGGGTGGTACATGCGGCTCGGCTTCGCGAGGAGGGGCAGCTCGGATTTCTTCCATGCACGCGGCTCGGAGGAAGATCGACTACAGGTTGAGCTTCGGCGTAGTCGGCAAACGGAGGAACGTCGGCTGGAACACGCTCGGCTTGAGAAGGAACGTCTGGGATGCCCGGCTTGTGATGGAAACGACTCTATTCTACAATGCACGGTGGAGACTTGCGACAGAGAAGAGGACGCGACGAAGACGAAGCTTCAAAATCGCTCGGCCTTTGACGCGAAGTGGACAGCTTCGTTTGAGCGTGGACTAA

mRNA sequence

GGAGCATCGGCTCACTTCAAGGAGGAGGTCGGCTTGGGTGGTACATGCGGCTCGGCTTCGCGAGGAGGGGCAGCTCGGATTTCTTCCATGCACGCGGCTCGGAGGAAGATCGACTACAGGTTGAGCTTCGGCGTAGTCGGCAAACGGAGGAACGTCGGCTGGAACACGCTCGGCTTGAGAAGGAACGTCTGGGATGCCCGGCTTGTGATGGAAACGACTCTATTCTACAATGCACGGTGGAGACTTGCGACAGAGAAGAGGACGCGACGAAGACGAAGCTTCAAAATCGCTCGGCCTTTGACGCGAAGTGGACAGCTTCGTTTGAGCGTGGACTAA

Coding sequence (CDS)

GGAGCATCGGCTCACTTCAAGGAGGAGGTCGGCTTGGGTGGTACATGCGGCTCGGCTTCGCGAGGAGGGGCAGCTCGGATTTCTTCCATGCACGCGGCTCGGAGGAAGATCGACTACAGGTTGAGCTTCGGCGTAGTCGGCAAACGGAGGAACGTCGGCTGGAACACGCTCGGCTTGAGAAGGAACGTCTGGGATGCCCGGCTTGTGATGGAAACGACTCTATTCTACAATGCACGGTGGAGACTTGCGACAGAGAAGAGGACGCGACGAAGACGAAGCTTCAAAATCGCTCGGCCTTTGACGCGAAGTGGACAGCTTCGTTTGAGCGTGGACTAA

Protein sequence

GASAHFKEEVGLGGTCGSASRGGAARISSMHAARRKIDYRLSFGVVGKRRNVGWNTLGLRRNVWDARLVMETTLFYNARWRLATEKRTRRRRSFKIARPLTRSGQLRLSVD*

Homology

[Close]

BLAST of Chy8G146070 vs. ExPASy TrEMBL
Match: A0A0A0L1B4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G541630 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.3e-06
Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 1  GASAHFKEEVGLGGTCGSASRGGAARISSMHAARRKIDYRLSF 44
          GAS HFKEEV L GT GSASRGG  +IS  H  +RKIDYRLSF
Sbjct: 9  GASTHFKEEVSLDGTRGSASRGGVDQISCTHVTQRKIDYRLSF 51

[Close]

BLAST of Chy8G146070 vs. NCBI nr
Match: KAE8649750.1 (hypothetical protein Csa_023746, partial [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 4.53e-09
Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 1  GASAHFKEEVGLGGTCGSASRGGAARISSMHAARRKIDYRLSF 43
          GAS HFKEEV L GT GSASRGG  +IS  H  +RKIDYRLSF
Sbjct: 8  GASTHFKEEVSLDGTRGSASRGGVDQISCTHVTQRKIDYRLSF 50

The following BLAST results are available for this feature:

BLAST of Chy8G146070 vs.


Match Name	E-value	Identity	Description

BLAST of Chy8G146070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1B4	5.3e-06	72.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G541630 PE=4 SV=1	[more]

BLAST of Chy8G146070 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649750.1	4.53e-09	72.09	hypothetical protein Csa_023746, partial [Cucumis sativus]	[more]

BLAST of Chy8G146070 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy8G146070.1	Chy8G146070.1	mRNA