Chy7G144850 (gene) Cucumber (hystrix) v1

Overview


Name	Chy7G144850
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Cellulose synthase-like protein D5
Location	chrH07: 20514317 .. 20514577 (-)
RNA-Seq Expression	Chy7G144850
Synteny	Chy7G144850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAAAGACCAAGCGGTTGAAGACAATGCAAATATGGGAAAGCTGCAGATTTCTAATGCTATTTTCACGGGAGGTTTCAATACGGTGACTCGTATGCACTTGATCAAATTGGATACTAACAATGGTGGAGGTCTTTGTTCTGGCTGTGAACAGAGTTACACACATGTTAGTGATGATGAAGCAGAGGACCAAGCTTTGTCATTGCTTTCAATGGCGGATGATTTTGAAACCAAGGACTGTGCTGGGTTTGGTTCAGAG

mRNA sequence

ATGACGAAAGACCAAGCGGTTGAAGACAATGCAAATATGGGAAAGCTGCAGATTTCTAATGCTATTTTCACGGGAGGTTTCAATACGGTGACTCGTATGCACTTGATCAAATTGGATACTAACAATGGTGGAGGTCTTTGTTCTGGCTGTGAACAGAGTTACACACATGTTAGTGATGATGAAGCAGAGGACCAAGCTTTGTCATTGCTTTCAATGGCGGATGATTTTGAAACCAAGGACTGTGCTGGGTTTGGTTCAGAG

Coding sequence (CDS)

ATGACGAAAGACCAAGCGGTTGAAGACAATGCAAATATGGGAAAGCTGCAGATTTCTAATGCTATTTTCACGGGAGGTTTCAATACGGTGACTCGTATGCACTTGATCAAATTGGATACTAACAATGGTGGAGGTCTTTGTTCTGGCTGTGAACAGAGTTACACACATGTTAGTGATGATGAAGCAGAGGACCAAGCTTTGTCATTGCTTTCAATGGCGGATGATTTTGAAACCAAGGACTGTGCTGGGTTTGGTTCAGAG

Protein sequence

MTKDQAVEDNANMGKLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLCSGCEQSYTHVSDDEAEDQALSLLSMADDFETKDCAGFGSE

Homology

[Close]

BLAST of Chy7G144850 vs. ExPASy TrEMBL
Match: A0A0A0KT82 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G002520 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.0e-38
Identity = 82/87 (94.25%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MTKDQAVEDNANMGKLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLCSGCEQSYTHVSDD 60
          M+KDQAVED+ANMGKLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLCS CEQSYTHVSDD
Sbjct: 1  MSKDQAVEDSANMGKLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLCSDCEQSYTHVSDD 60

Query: 61 EAEDQALSLLSMADDFETKDCAGFGSE 88
          EAEDQALSLLSMADDFETKD  GFGSE
Sbjct: 61 EAEDQALSLLSMADDFETKDSNGFGSE 87

[Close]

BLAST of Chy7G144850 vs. ExPASy TrEMBL
Match: A0A0A0KV93 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G002510 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 9.4e-35
Identity = 78/87 (89.66%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MTKDQAVEDNANMGKLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLCSGCEQSYTHVSDD 60
          M+KDQAVEDNA M KLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLC+GCE SYTHVSDD
Sbjct: 1  MSKDQAVEDNAYMEKLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLCTGCELSYTHVSDD 60

Query: 61 EAEDQALSLLSMADDFETKDCAGFGSE 88
          EAE+Q LSLLSMADDFETKD A FGSE
Sbjct: 61 EAENQDLSLLSMADDFETKDTAEFGSE 87

[Close]

BLAST of Chy7G144850 vs. ExPASy TrEMBL
Match: A0A5D3E0B6 (Cellulose synthase-like protein D5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001300 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 6.1e-34
Identity = 75/87 (86.21%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1  MTKDQAVEDNANMGKLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLCSGCEQSYTHVSDD 60
          M+KDQAVEDN NMGKLQISN IFTGGFNTVTRMH+IKLD NNGGGLC GCEQSYT VSDD
Sbjct: 1  MSKDQAVEDNENMGKLQISNTIFTGGFNTVTRMHVIKLDANNGGGLCPGCEQSYTDVSDD 60

Query: 61 EAEDQALSLLSMADDFETKDCAGFGSE 88
          EA DQALSLLSM DD ETKD  GFGSE
Sbjct: 61 EANDQALSLLSMVDDSETKDSVGFGSE 87

[Close]

BLAST of Chy7G144850 vs. ExPASy TrEMBL
Match: A0A5A7TS56 (Cellulose synthase-like protein D5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001320 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-25
Identity = 66/87 (75.86%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1  MTKDQAVEDNANMGKLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLCSGCEQSYTHVSDD 60
          M+KD+AVEDNANMGKLQISN IFTGGFNTVTRMH+IKLD           EQSYT VSDD
Sbjct: 1  MSKDRAVEDNANMGKLQISNTIFTGGFNTVTRMHVIKLD----------IEQSYTDVSDD 60

Query: 61 EAEDQALSLLSMADDFETKDCAGFGSE 88
          EA+DQALSLLS+ADD ETKD  GFGSE
Sbjct: 61 EAKDQALSLLSVADDSETKDSVGFGSE 77

[Close]

BLAST of Chy7G144850 vs. ExPASy TrEMBL
Match: A0A1S4DZS5 (cellulose synthase-like protein D5 OS=Cucumis melo OX=3656 GN=LOC103494893 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-25
Identity = 66/87 (75.86%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1  MTKDQAVEDNANMGKLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLCSGCEQSYTHVSDD 60
          M+KD+AVEDNANMGKLQISN IFTGGFNTVTRMH+IKLD           EQSYT VSDD
Sbjct: 1  MSKDRAVEDNANMGKLQISNTIFTGGFNTVTRMHVIKLD----------IEQSYTDVSDD 60

Query: 61 EAEDQALSLLSMADDFETKDCAGFGSE 88
          EA+DQALSLLS+ADD ETKD  GFGSE
Sbjct: 61 EAKDQALSLLSVADDSETKDSVGFGSE 77

[Close]

BLAST of Chy7G144850 vs. NCBI nr
Match: XP_011652947.2 (cellulose synthase-like protein D5 [Cucumis sativus] >XP_031739765.1 cellulose synthase-like protein D5 [Cucumis sativus] >KAE8649050.1 hypothetical protein Csa_014852 [Cucumis sativus])

HSP 1 Score: 165 bits (417), Expect = 5.35e-45
Identity = 82/87 (94.25%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MTKDQAVEDNANMGKLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLCSGCEQSYTHVSDD 60
          M+KDQAVED+ANMGKLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLCS CEQSYTHVSDD
Sbjct: 1  MSKDQAVEDSANMGKLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLCSDCEQSYTHVSDD 60

Query: 61 EAEDQALSLLSMADDFETKDCAGFGSE 87
          EAEDQALSLLSMADDFETKD  GFGSE
Sbjct: 61 EAEDQALSLLSMADDFETKDSNGFGSE 87

[Close]

BLAST of Chy7G144850 vs. NCBI nr
Match: XP_011652946.2 (cellulose synthase-like protein D5 [Cucumis sativus] >KGN52837.2 hypothetical protein Csa_015328 [Cucumis sativus])

HSP 1 Score: 154 bits (390), Expect = 2.38e-41
Identity = 78/87 (89.66%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MTKDQAVEDNANMGKLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLCSGCEQSYTHVSDD 60
          M+KDQAVEDNA M KLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLC+GCE SYTHVSDD
Sbjct: 1  MSKDQAVEDNAYMEKLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLCTGCELSYTHVSDD 60

Query: 61 EAEDQALSLLSMADDFETKDCAGFGSE 87
          EAE+Q LSLLSMADDFETKD A FGSE
Sbjct: 61 EAENQDLSLLSMADDFETKDTAEFGSE 87

[Close]

BLAST of Chy7G144850 vs. NCBI nr
Match: KAA0044399.1 (cellulose synthase-like protein D5 [Cucumis melo var. makuwa] >TYK29527.1 cellulose synthase-like protein D5 [Cucumis melo var. makuwa])

HSP 1 Score: 152 bits (383), Expect = 2.11e-40
Identity = 75/87 (86.21%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1  MTKDQAVEDNANMGKLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLCSGCEQSYTHVSDD 60
          M+KDQAVEDN NMGKLQISN IFTGGFNTVTRMH+IKLD NNGGGLC GCEQSYT VSDD
Sbjct: 1  MSKDQAVEDNENMGKLQISNTIFTGGFNTVTRMHVIKLDANNGGGLCPGCEQSYTDVSDD 60

Query: 61 EAEDQALSLLSMADDFETKDCAGFGSE 87
          EA DQALSLLSM DD ETKD  GFGSE
Sbjct: 61 EANDQALSLLSMVDDSETKDSVGFGSE 87

[Close]

BLAST of Chy7G144850 vs. NCBI nr
Match: XP_016901483.1 (PREDICTED: cellulose synthase-like protein D5 [Cucumis melo])

HSP 1 Score: 122 bits (307), Expect = 3.74e-30
Identity = 66/87 (75.86%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1  MTKDQAVEDNANMGKLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLCSGCEQSYTHVSDD 60
          M+KD+AVEDNANMGKLQISN IFTGGFNTVTRMH+IKLD           EQSYT VSDD
Sbjct: 1  MSKDRAVEDNANMGKLQISNTIFTGGFNTVTRMHVIKLDI----------EQSYTDVSDD 60

Query: 61 EAEDQALSLLSMADDFETKDCAGFGSE 87
          EA+DQALSLLS+ADD ETKD  GFGSE
Sbjct: 61 EAKDQALSLLSVADDSETKDSVGFGSE 77

[Close]

BLAST of Chy7G144850 vs. NCBI nr
Match: KAA0044401.1 (cellulose synthase-like protein D5 [Cucumis melo var. makuwa] >TYK29529.1 cellulose synthase-like protein D5 [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (307), Expect = 3.82e-30
Identity = 66/87 (75.86%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1  MTKDQAVEDNANMGKLQISNAIFTGGFNTVTRMHLIKLDTNNGGGLCSGCEQSYTHVSDD 60
          M+KD+AVEDNANMGKLQISN IFTGGFNTVTRMH+IKLD           EQSYT VSDD
Sbjct: 1  MSKDRAVEDNANMGKLQISNTIFTGGFNTVTRMHVIKLDI----------EQSYTDVSDD 60

Query: 61 EAEDQALSLLSMADDFETKDCAGFGSE 87
          EA+DQALSLLS+ADD ETKD  GFGSE
Sbjct: 61 EAKDQALSLLSVADDSETKDSVGFGSE 77

The following BLAST results are available for this feature:

BLAST of Chy7G144850 vs.


Match Name	E-value	Identity	Description

BLAST of Chy7G144850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT82	7.0e-38	94.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G002520 PE=4 SV=1	[more]
A0A0A0KV93	9.4e-35	89.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G002510 PE=4 SV=1	[more]
A0A5D3E0B6	6.1e-34	86.21	Cellulose synthase-like protein D5 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A5A7TS56	3.0e-25	75.86	Cellulose synthase-like protein D5 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S4DZS5	3.0e-25	75.86	cellulose synthase-like protein D5 OS=Cucumis melo OX=3656 GN=LOC103494893 PE=4 ...	[more]

BLAST of Chy7G144850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652947.2	5.35e-45	94.25	cellulose synthase-like protein D5 [Cucumis sativus] >XP_031739765.1 cellulose s...	[more]
XP_011652946.2	2.38e-41	89.66	cellulose synthase-like protein D5 [Cucumis sativus] >KGN52837.2 hypothetical pr...	[more]
KAA0044399.1	2.11e-40	86.21	cellulose synthase-like protein D5 [Cucumis melo var. makuwa] >TYK29527.1 cellul...	[more]
XP_016901483.1	3.74e-30	75.86	PREDICTED: cellulose synthase-like protein D5 [Cucumis melo]	[more]
KAA0044401.1	3.82e-30	75.86	cellulose synthase-like protein D5 [Cucumis melo var. makuwa] >TYK29529.1 cellul...	[more]

BLAST of Chy7G144850 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy7G144850.1	Chy7G144850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0097502	mannosylation
biological_process	GO:0009833	plant-type primary cell wall biogenesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0016760	cellulose synthase (UDP-forming) activity
molecular_function	GO:0051753	mannan synthase activity