Chy7G142290 (gene) Cucumber (hystrix) v1

Overview


Name	Chy7G142290
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH07: 18570133 .. 18570926 (-)
RNA-Seq Expression	Chy7G142290
Synteny	Chy7G142290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTAAGATATCTCTCATTTGGCAACTGGTTGTGGTTTTAATGGCTATTTTAAGTTGTAGTGTTGCAGCAAGGTATCGGGTTTCTACACCTCAAACTGCTTGTAAGTGAATCCTAAACCCATTTCTTTTGGATATATATGGATAGTAAAAAGTTTTTGCATTCATAAACATATTTAGTTTAATTTTGTTTTCTATTATATATATACACATGTGTCTGTGTAGTTCCTTCCAAAACATGATGATGAAACTGAAACGATATAAAAATGATTAACATGATGAAATTACACACGCATCATGAAAAAAATATCTTGTCTTTGCTTATACTTGGGTGGGGGATGTTTTTTCAGATTATATATATGTAATCTAACAATTCGATATAGAACTCAGATGCACATATACAAAGGTTGGCCGTAGCTAGGTTTAGGTTATTGGTCGCTCTATTTGATCCTTTCAAGTCGATCATAAAGTTAATCAATTCAATTTTTTTGTTCAGTCCAGCAAATTAATATCATTTCACAGTCTTTTCTTTTTATATGATTCATCTGAATTGCAGCTAAACATAAACAATGGAGTTTATATATATATATATATATAAATCATTTGCAACCATTTTAGACTATTTCTACAAAGTAATGGATCATACTATCTACTTTATTATGTTGCAATCTAATTATTTGTTTTATTTTTTTCTTATCTTTTTCAGACAAGGACGTAGTGGGAATCAAAAGCATAAAGAAGGTTTTTAAGCCCATTCCAAGGAAAGATAAACCTAGGGGTGGAAATTACTAA

mRNA sequence

ATGGCTTCTAAGATATCTCTCATTTGGCAACTGGTTGTGGTTTTAATGGCTATTTTAAGTTGTAGTGTTGCAGCAAGGTATCGGGTTTCTACACCTCAAACTGCTTACAAGGACGTAGTGGGAATCAAAAGCATAAAGAAGGTTTTTAAGCCCATTCCAAGGAAAGATAAACCTAGGGGTGGAAATTACTAA

Coding sequence (CDS)

ATGGCTTCTAAGATATCTCTCATTTGGCAACTGGTTGTGGTTTTAATGGCTATTTTAAGTTGTAGTGTTGCAGCAAGGTATCGGGTTTCTACACCTCAAACTGCTTACAAGGACGTAGTGGGAATCAAAAGCATAAAGAAGGTTTTTAAGCCCATTCCAAGGAAAGATAAACCTAGGGGTGGAAATTACTAA

Protein sequence

MASKISLIWQLVVVLMAILSCSVAARYRVSTPQTAYKDVVGIKSIKKVFKPIPRKDKPRGGNY*

Homology

[Close]

BLAST of Chy7G142290 vs. ExPASy TrEMBL
Match: A0A0A0KW87 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022260 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.6e-23
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MASKISLIWQLVVVLMAILSCSVAARYRVSTPQTAYKDVVGIKSIKKVFKPIPRKDKPRG 60
          MASKISLIWQLVVVLMAILSCSVAAR+RVSTPQTAYKD VGIKSIKKVFKP+P+KDKPRG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 61 GNY 64
          GNY
Sbjct: 61 GNY 63

[Close]

BLAST of Chy7G142290 vs. NCBI nr
Match: KGN53139.1 (hypothetical protein Csa_015279 [Cucumis sativus])

HSP 1 Score: 116 bits (290), Expect = 2.00e-32
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MASKISLIWQLVVVLMAILSCSVAARYRVSTPQTAYKDVVGIKSIKKVFKPIPRKDKPRG 60
          MASKISLIWQLVVVLMAILSCSVAAR+RVSTPQTAYKD VGIKSIKKVFKP+P+KDKPRG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 61 GNY 63
          GNY
Sbjct: 61 GNY 63

The following BLAST results are available for this feature:

BLAST of Chy7G142290 vs.


Match Name	E-value	Identity	Description

BLAST of Chy7G142290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW87	1.6e-23	93.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022260 PE=4 SV=1	[more]

BLAST of Chy7G142290 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53139.1	2.00e-32	93.65	hypothetical protein Csa_015279 [Cucumis sativus]	[more]

BLAST of Chy7G142290 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..21 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy7G142290.1	Chy7G142290.1	mRNA