Chy7G139390 (gene) Cucumber (hystrix) v1

Overview


Name	Chy7G139390
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Late embryogenesis abundant protein
Location	chrH07: 16042289 .. 16042914 (-)
RNA-Seq Expression	Chy7G139390
Synteny	Chy7G139390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCCATGTTCTTCAAGTAAGAGCCTTCTTCAACTCAGCCATCAACTAATTCTTTTCTTTTGTTTATGATTCTGTTTTTCTACAAGAAAGCAGTTTTTAAGAACATCAGAATAAGATTTGAAATATTTACTTCTATTTTCACCATTATCTTGACATTGATCTATGATCAGAAGGCTGCAGACCAAAACAAAGGACAGTTTTGGAACCAAAGTCAAATTAGGTTTCATTCAGAATACGGTTGTTAGCTGGGTTCAATTAGTACATTGTTTAAACTTGTATTAACGTGAGATGTAAAACACAACACATGGAATAACGAGACAGAGTATTACCTTGTTTTCCTGATTCTGATTCGGTTACATTCTTTGGCAGACCGATTGGGCGAAAGGGCTTCCACAGGAAAAGCTCTTCTCCAGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTAAAGAGCAACCAGAGCCATGTGGGGGGTGAAGCGACTCCTTGGGTGCTCGATGGGCGAACTGGAATTTATTACCCTAAAGGCCACGAGAAGGTCCTTGACAGCATTCCCGATGGCGGTGGGGCTGCAGTTAACACCCAGGTCAACTGGTTTAACGATGAAAACGTCTAA

mRNA sequence

ATGAACTCCATGTTCTTCAAACCGATTGGGCGAAAGGGCTTCCACAGGAAAAGCTCTTCTCCAGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTAAAGAGCAACCAGAGCCATGTGGGGGGTGAAGCGACTCCTTGGGTGCTCGATGGGCGAACTGGAATTTATTACCCTAAAGGCCACGAGAAGGTCCTTGACAGCATTCCCGATGGCGGTGGGGCTGCAGTTAACACCCAGGTCAACTGGTTTAACGATGAAAACGTCTAA

Coding sequence (CDS)

ATGAACTCCATGTTCTTCAAACCGATTGGGCGAAAGGGCTTCCACAGGAAAAGCTCTTCTCCAGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTAAAGAGCAACCAGAGCCATGTGGGGGGTGAAGCGACTCCTTGGGTGCTCGATGGGCGAACTGGAATTTATTACCCTAAAGGCCACGAGAAGGTCCTTGACAGCATTCCCGATGGCGGTGGGGCTGCAGTTAACACCCAGGTCAACTGGTTTAACGATGAAAACGTCTAA

Protein sequence

MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHEKVLDSIPDGGGAAVNTQVNWFNDENV*

Homology

[Close]

BLAST of Chy7G139390 vs. ExPASy TrEMBL
Match: A0A1S3BTQ2 (uncharacterized protein LOC103493056 OS=Cucumis melo OX=3656 GN=LOC103493056 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1   MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYP 60
           MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYP
Sbjct: 12  MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYP 71

Query: 61  KGHEKVLDSIPDGGGAAVNTQVNWFNDENV 91
           KGHEKVLD IPDGGGA VNTQVNWFNDEN+
Sbjct: 72  KGHEKVLDGIPDGGGATVNTQVNWFNDENI 101

[Close]

BLAST of Chy7G139390 vs. ExPASy TrEMBL
Match: A0A0A0KX78 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055970 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.8e-44
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1   MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYP 60
           MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGE TPWVLDGRTGIYYP
Sbjct: 12  MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPWVLDGRTGIYYP 71

Query: 61  KGHEKVLDSIPDGGGAAVNTQVNWFNDENV 91
           KGHEKVL+SIPDGGGAAVNTQVNWFNDEN+
Sbjct: 72  KGHEKVLNSIPDGGGAAVNTQVNWFNDENI 101

[Close]

BLAST of Chy7G139390 vs. ExPASy TrEMBL
Match: A0A5A7TP55 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002880 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.4e-41
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 5   FFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE 64
           F++PIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE
Sbjct: 47  FWRPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE 106

Query: 65  KVLDSIPDGGGAAVNTQVNWFNDENV 91
           KVLD IPDGGGA VNTQVNWFNDEN+
Sbjct: 107 KVLDGIPDGGGATVNTQVNWFNDENI 132

[Close]

BLAST of Chy7G139390 vs. ExPASy TrEMBL
Match: A0A5D3CX31 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002970 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.4e-41
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 5   FFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE 64
           F++PIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE
Sbjct: 47  FWRPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE 106

Query: 65  KVLDSIPDGGGAAVNTQVNWFNDENV 91
           KVLD IPDGGGA VNTQVNWFNDEN+
Sbjct: 107 KVLDGIPDGGGATVNTQVNWFNDENI 132

[Close]

BLAST of Chy7G139390 vs. ExPASy TrEMBL
Match: A0A6J1J914 (uncharacterized protein LOC111482845 OS=Cucurbita maxima OX=3661 GN=LOC111482845 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.7e-40
Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1   MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYP 60
           MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSN+S V GE TPWVLDGRTGIYYP
Sbjct: 45  MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPWVLDGRTGIYYP 104

Query: 61  KGHEKVLDSIPDGGGAAVNTQVNWFNDEN 90
           KGHE VL+SIP+GGGAAVNTQVNWFNDEN
Sbjct: 105 KGHENVLESIPNGGGAAVNTQVNWFNDEN 133

[Close]

BLAST of Chy7G139390 vs. NCBI nr
Match: XP_008451903.1 (PREDICTED: uncharacterized protein LOC103493056 [Cucumis melo])

HSP 1 Score: 188 bits (477), Expect = 5.47e-60
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1   MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYP 60
           MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYP
Sbjct: 12  MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYP 71

Query: 61  KGHEKVLDSIPDGGGAAVNTQVNWFNDENV 90
           KGHEKVLD IPDGGGA VNTQVNWFNDEN+
Sbjct: 72  KGHEKVLDGIPDGGGATVNTQVNWFNDENI 101

[Close]

BLAST of Chy7G139390 vs. NCBI nr
Match: XP_004148978.1 (uncharacterized protein LOC101205531 [Cucumis sativus] >KGN53454.1 hypothetical protein Csa_014649 [Cucumis sativus])

HSP 1 Score: 187 bits (476), Expect = 7.78e-60
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1   MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYP 60
           MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGE TPWVLDGRTGIYYP
Sbjct: 12  MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPWVLDGRTGIYYP 71

Query: 61  KGHEKVLDSIPDGGGAAVNTQVNWFNDENV 90
           KGHEKVL+SIPDGGGAAVNTQVNWFNDEN+
Sbjct: 72  KGHEKVLNSIPDGGGAAVNTQVNWFNDENI 101

[Close]

BLAST of Chy7G139390 vs. NCBI nr
Match: XP_038884831.1 (uncharacterized protein LOC120075477 [Benincasa hispida])

HSP 1 Score: 186 bits (471), Expect = 4.51e-59
Identity = 85/90 (94.44%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1   MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYP 60
           MNSMFFKPIGRKGFHRKSSSPDM+RERVETESKE+KSN+SHVGGEATPWVLDGRTGIYYP
Sbjct: 12  MNSMFFKPIGRKGFHRKSSSPDMIRERVETESKEMKSNKSHVGGEATPWVLDGRTGIYYP 71

Query: 61  KGHEKVLDSIPDGGGAAVNTQVNWFNDENV 90
           KGHEKVL+SIPDGGGAAVNTQVNWFNDEN+
Sbjct: 72  KGHEKVLESIPDGGGAAVNTQVNWFNDENI 101

[Close]

BLAST of Chy7G139390 vs. NCBI nr
Match: TYK16491.1 (uncharacterized protein E5676_scaffold21G002970 [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (449), Expect = 2.74e-55
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 5   FFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE 64
           F++PIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE
Sbjct: 47  FWRPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE 106

Query: 65  KVLDSIPDGGGAAVNTQVNWFNDENV 90
           KVLD IPDGGGA VNTQVNWFNDEN+
Sbjct: 107 KVLDGIPDGGGATVNTQVNWFNDENI 132

[Close]

BLAST of Chy7G139390 vs. NCBI nr
Match: KAA0044980.1 (uncharacterized protein E6C27_scaffold74G002880 [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (449), Expect = 2.74e-55
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 5   FFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE 64
           F++PIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE
Sbjct: 47  FWRPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE 106

Query: 65  KVLDSIPDGGGAAVNTQVNWFNDENV 90
           KVLD IPDGGGA VNTQVNWFNDEN+
Sbjct: 107 KVLDGIPDGGGATVNTQVNWFNDENI 132

[Close]

BLAST of Chy7G139390 vs. TAIR 10
Match: AT1G73120.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; EXPRESSED IN: root, cultured cell; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-13
Identity = 42/96 (43.75%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 1   MNSMFFKPIGRKGFHRKSSSPDMMRERVETE----SKELKSNQSHVG-GE----ATPWVL 60
           MN+MF KP+ RK  H+KS+S D++R+ V+TE     +E+K+ +   G GE    A+ WV 
Sbjct: 14  MNTMFVKPMLRKSIHKKSASHDIVRDTVKTEGSSSGEEVKTMRGFYGAGETSSPASSWVP 73

Query: 61  DGRTGIYYPKGHEKVLDSI-PDGGGAAVNTQVNWFN 87
              TGIYYPKG EKV+  + P   G+  +  VNWF+
Sbjct: 74  HEGTGIYYPKGQEKVMQDVPPPPAGSHADELVNWFS 109

[Close]

BLAST of Chy7G139390 vs. TAIR 10
Match: AT3G19550.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.4 bits (93), Expect = 8.9e-04
Identity = 19/67 (28.36%), Postives = 34/67 (50.75%), Query Frame = 0


Query: 10 GRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHEKVLDS 69
          GR G   K++  + M   +    +++  +     GE   WV   RTGI++P G E V++ 
Sbjct: 22 GRAGISSKAAKSNPM---IVDYFEDISDHNLKFSGEEESWVPHPRTGIFFPPGQESVMED 81

Query: 70 IPDGGGA 77
          +P+G  +
Sbjct: 82 VPNGAAS 85

The following BLAST results are available for this feature:

BLAST of Chy7G139390 vs.


Match Name	E-value	Identity	Description

BLAST of Chy7G139390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BTQ2	1.4e-44	96.67	uncharacterized protein LOC103493056 OS=Cucumis melo OX=3656 GN=LOC103493056 PE=...	[more]
A0A0A0KX78	1.8e-44	96.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055970 PE=4 SV=1	[more]
A0A5A7TP55	2.4e-41	94.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CX31	2.4e-41	94.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1J914	2.7e-40	92.13	uncharacterized protein LOC111482845 OS=Cucurbita maxima OX=3661 GN=LOC111482845...	[more]

BLAST of Chy7G139390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451903.1	5.47e-60	96.67	PREDICTED: uncharacterized protein LOC103493056 [Cucumis melo]	[more]
XP_004148978.1	7.78e-60	96.67	uncharacterized protein LOC101205531 [Cucumis sativus] >KGN53454.1 hypothetical ...	[more]
XP_038884831.1	4.51e-59	94.44	uncharacterized protein LOC120075477 [Benincasa hispida]	[more]
TYK16491.1	2.74e-55	94.19	uncharacterized protein E5676_scaffold21G002970 [Cucumis melo var. makuwa]	[more]
KAA0044980.1	2.74e-55	94.19	uncharacterized protein E6C27_scaffold74G002880 [Cucumis melo var. makuwa]	[more]

BLAST of Chy7G139390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73120.1	1.6e-13	43.75	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]
AT3G19550.1	8.9e-04	28.36	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004926	Late embryogenesis abundant protein, LEA_3 subgroup	PFAM	PF03242	LEA_3	coord: 9..69 e-value: 1.7E-4 score: 22.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR35109	GLUTAMATE RACEMASE	coord: 1..88
None	No IPR available	PANTHER	PTHR35109:SF2	BNAA02G16300D PROTEIN	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy7G139390.1	Chy7G139390.1	mRNA