Chy7G139390 (gene) Cucumber (hystrix) v1

Overview
NameChy7G139390
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionLate embryogenesis abundant protein
LocationchrH07: 16042289 .. 16042914 (-)
RNA-Seq ExpressionChy7G139390
SyntenyChy7G139390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCCATGTTCTTCAAGTAAGAGCCTTCTTCAACTCAGCCATCAACTAATTCTTTTCTTTTGTTTATGATTCTGTTTTTCTACAAGAAAGCAGTTTTTAAGAACATCAGAATAAGATTTGAAATATTTACTTCTATTTTCACCATTATCTTGACATTGATCTATGATCAGAAGGCTGCAGACCAAAACAAAGGACAGTTTTGGAACCAAAGTCAAATTAGGTTTCATTCAGAATACGGTTGTTAGCTGGGTTCAATTAGTACATTGTTTAAACTTGTATTAACGTGAGATGTAAAACACAACACATGGAATAACGAGACAGAGTATTACCTTGTTTTCCTGATTCTGATTCGGTTACATTCTTTGGCAGACCGATTGGGCGAAAGGGCTTCCACAGGAAAAGCTCTTCTCCAGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTAAAGAGCAACCAGAGCCATGTGGGGGGTGAAGCGACTCCTTGGGTGCTCGATGGGCGAACTGGAATTTATTACCCTAAAGGCCACGAGAAGGTCCTTGACAGCATTCCCGATGGCGGTGGGGCTGCAGTTAACACCCAGGTCAACTGGTTTAACGATGAAAACGTCTAA

mRNA sequence

ATGAACTCCATGTTCTTCAAACCGATTGGGCGAAAGGGCTTCCACAGGAAAAGCTCTTCTCCAGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTAAAGAGCAACCAGAGCCATGTGGGGGGTGAAGCGACTCCTTGGGTGCTCGATGGGCGAACTGGAATTTATTACCCTAAAGGCCACGAGAAGGTCCTTGACAGCATTCCCGATGGCGGTGGGGCTGCAGTTAACACCCAGGTCAACTGGTTTAACGATGAAAACGTCTAA

Coding sequence (CDS)

ATGAACTCCATGTTCTTCAAACCGATTGGGCGAAAGGGCTTCCACAGGAAAAGCTCTTCTCCAGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTAAAGAGCAACCAGAGCCATGTGGGGGGTGAAGCGACTCCTTGGGTGCTCGATGGGCGAACTGGAATTTATTACCCTAAAGGCCACGAGAAGGTCCTTGACAGCATTCCCGATGGCGGTGGGGCTGCAGTTAACACCCAGGTCAACTGGTTTAACGATGAAAACGTCTAA

Protein sequence

MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHEKVLDSIPDGGGAAVNTQVNWFNDENV*
Homology
BLAST of Chy7G139390 vs. ExPASy TrEMBL
Match: A0A1S3BTQ2 (uncharacterized protein LOC103493056 OS=Cucumis melo OX=3656 GN=LOC103493056 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0

Query: 1   MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYP 60
           MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYP
Sbjct: 12  MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYP 71

Query: 61  KGHEKVLDSIPDGGGAAVNTQVNWFNDENV 91
           KGHEKVLD IPDGGGA VNTQVNWFNDEN+
Sbjct: 72  KGHEKVLDGIPDGGGATVNTQVNWFNDENI 101

BLAST of Chy7G139390 vs. ExPASy TrEMBL
Match: A0A0A0KX78 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055970 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.8e-44
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0

Query: 1   MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYP 60
           MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGE TPWVLDGRTGIYYP
Sbjct: 12  MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPWVLDGRTGIYYP 71

Query: 61  KGHEKVLDSIPDGGGAAVNTQVNWFNDENV 91
           KGHEKVL+SIPDGGGAAVNTQVNWFNDEN+
Sbjct: 72  KGHEKVLNSIPDGGGAAVNTQVNWFNDENI 101

BLAST of Chy7G139390 vs. ExPASy TrEMBL
Match: A0A5A7TP55 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002880 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.4e-41
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 0

Query: 5   FFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE 64
           F++PIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE
Sbjct: 47  FWRPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE 106

Query: 65  KVLDSIPDGGGAAVNTQVNWFNDENV 91
           KVLD IPDGGGA VNTQVNWFNDEN+
Sbjct: 107 KVLDGIPDGGGATVNTQVNWFNDENI 132

BLAST of Chy7G139390 vs. ExPASy TrEMBL
Match: A0A5D3CX31 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002970 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.4e-41
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 0

Query: 5   FFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE 64
           F++PIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE
Sbjct: 47  FWRPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE 106

Query: 65  KVLDSIPDGGGAAVNTQVNWFNDENV 91
           KVLD IPDGGGA VNTQVNWFNDEN+
Sbjct: 107 KVLDGIPDGGGATVNTQVNWFNDENI 132

BLAST of Chy7G139390 vs. ExPASy TrEMBL
Match: A0A6J1J914 (uncharacterized protein LOC111482845 OS=Cucurbita maxima OX=3661 GN=LOC111482845 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.7e-40
Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 0

Query: 1   MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYP 60
           MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSN+S V GE TPWVLDGRTGIYYP
Sbjct: 45  MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPWVLDGRTGIYYP 104

Query: 61  KGHEKVLDSIPDGGGAAVNTQVNWFNDEN 90
           KGHE VL+SIP+GGGAAVNTQVNWFNDEN
Sbjct: 105 KGHENVLESIPNGGGAAVNTQVNWFNDEN 133

BLAST of Chy7G139390 vs. NCBI nr
Match: XP_008451903.1 (PREDICTED: uncharacterized protein LOC103493056 [Cucumis melo])

HSP 1 Score: 188 bits (477), Expect = 5.47e-60
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0

Query: 1   MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYP 60
           MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYP
Sbjct: 12  MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYP 71

Query: 61  KGHEKVLDSIPDGGGAAVNTQVNWFNDENV 90
           KGHEKVLD IPDGGGA VNTQVNWFNDEN+
Sbjct: 72  KGHEKVLDGIPDGGGATVNTQVNWFNDENI 101

BLAST of Chy7G139390 vs. NCBI nr
Match: XP_004148978.1 (uncharacterized protein LOC101205531 [Cucumis sativus] >KGN53454.1 hypothetical protein Csa_014649 [Cucumis sativus])

HSP 1 Score: 187 bits (476), Expect = 7.78e-60
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0

Query: 1   MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYP 60
           MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGE TPWVLDGRTGIYYP
Sbjct: 12  MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPWVLDGRTGIYYP 71

Query: 61  KGHEKVLDSIPDGGGAAVNTQVNWFNDENV 90
           KGHEKVL+SIPDGGGAAVNTQVNWFNDEN+
Sbjct: 72  KGHEKVLNSIPDGGGAAVNTQVNWFNDENI 101

BLAST of Chy7G139390 vs. NCBI nr
Match: XP_038884831.1 (uncharacterized protein LOC120075477 [Benincasa hispida])

HSP 1 Score: 186 bits (471), Expect = 4.51e-59
Identity = 85/90 (94.44%), Postives = 90/90 (100.00%), Query Frame = 0

Query: 1   MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYP 60
           MNSMFFKPIGRKGFHRKSSSPDM+RERVETESKE+KSN+SHVGGEATPWVLDGRTGIYYP
Sbjct: 12  MNSMFFKPIGRKGFHRKSSSPDMIRERVETESKEMKSNKSHVGGEATPWVLDGRTGIYYP 71

Query: 61  KGHEKVLDSIPDGGGAAVNTQVNWFNDENV 90
           KGHEKVL+SIPDGGGAAVNTQVNWFNDEN+
Sbjct: 72  KGHEKVLESIPDGGGAAVNTQVNWFNDENI 101

BLAST of Chy7G139390 vs. NCBI nr
Match: TYK16491.1 (uncharacterized protein E5676_scaffold21G002970 [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (449), Expect = 2.74e-55
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 0

Query: 5   FFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE 64
           F++PIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE
Sbjct: 47  FWRPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE 106

Query: 65  KVLDSIPDGGGAAVNTQVNWFNDENV 90
           KVLD IPDGGGA VNTQVNWFNDEN+
Sbjct: 107 KVLDGIPDGGGATVNTQVNWFNDENI 132

BLAST of Chy7G139390 vs. NCBI nr
Match: KAA0044980.1 (uncharacterized protein E6C27_scaffold74G002880 [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (449), Expect = 2.74e-55
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 0

Query: 5   FFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE 64
           F++PIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE
Sbjct: 47  FWRPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHE 106

Query: 65  KVLDSIPDGGGAAVNTQVNWFNDENV 90
           KVLD IPDGGGA VNTQVNWFNDEN+
Sbjct: 107 KVLDGIPDGGGATVNTQVNWFNDENI 132

BLAST of Chy7G139390 vs. TAIR 10
Match: AT1G73120.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; EXPRESSED IN: root, cultured cell; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-13
Identity = 42/96 (43.75%), Postives = 60/96 (62.50%), Query Frame = 0

Query: 1   MNSMFFKPIGRKGFHRKSSSPDMMRERVETE----SKELKSNQSHVG-GE----ATPWVL 60
           MN+MF KP+ RK  H+KS+S D++R+ V+TE     +E+K+ +   G GE    A+ WV 
Sbjct: 14  MNTMFVKPMLRKSIHKKSASHDIVRDTVKTEGSSSGEEVKTMRGFYGAGETSSPASSWVP 73

Query: 61  DGRTGIYYPKGHEKVLDSI-PDGGGAAVNTQVNWFN 87
              TGIYYPKG EKV+  + P   G+  +  VNWF+
Sbjct: 74  HEGTGIYYPKGQEKVMQDVPPPPAGSHADELVNWFS 109

BLAST of Chy7G139390 vs. TAIR 10
Match: AT3G19550.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.4 bits (93), Expect = 8.9e-04
Identity = 19/67 (28.36%), Postives = 34/67 (50.75%), Query Frame = 0

Query: 10 GRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHEKVLDS 69
          GR G   K++  + M   +    +++  +     GE   WV   RTGI++P G E V++ 
Sbjct: 22 GRAGISSKAAKSNPM---IVDYFEDISDHNLKFSGEEESWVPHPRTGIFFPPGQESVMED 81

Query: 70 IPDGGGA 77
          +P+G  +
Sbjct: 82 VPNGAAS 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3BTQ21.4e-4496.67uncharacterized protein LOC103493056 OS=Cucumis melo OX=3656 GN=LOC103493056 PE=... [more]
A0A0A0KX781.8e-4496.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055970 PE=4 SV=1[more]
A0A5A7TP552.4e-4194.19Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CX312.4e-4194.19Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1J9142.7e-4092.13uncharacterized protein LOC111482845 OS=Cucurbita maxima OX=3661 GN=LOC111482845... [more]
Match NameE-valueIdentityDescription
XP_008451903.15.47e-6096.67PREDICTED: uncharacterized protein LOC103493056 [Cucumis melo][more]
XP_004148978.17.78e-6096.67uncharacterized protein LOC101205531 [Cucumis sativus] >KGN53454.1 hypothetical ... [more]
XP_038884831.14.51e-5994.44uncharacterized protein LOC120075477 [Benincasa hispida][more]
TYK16491.12.74e-5594.19uncharacterized protein E5676_scaffold21G002970 [Cucumis melo var. makuwa][more]
KAA0044980.12.74e-5594.19uncharacterized protein E6C27_scaffold74G002880 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT1G73120.11.6e-1343.75unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
AT3G19550.18.9e-0428.36unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004926Late embryogenesis abundant protein, LEA_3 subgroupPFAMPF03242LEA_3coord: 9..69
e-value: 1.7E-4
score: 22.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availablePANTHERPTHR35109GLUTAMATE RACEMASEcoord: 1..88
NoneNo IPR availablePANTHERPTHR35109:SF2BNAA02G16300D PROTEINcoord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy7G139390.1Chy7G139390.1mRNA