Chy7G138960 (gene) Cucumber (hystrix) v1

Overview
NameChy7G138960
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptioncold shock domain-containing protein 3-like
LocationchrH07: 15614312 .. 15614662 (-)
RNA-Seq ExpressionChy7G138960
SyntenyChy7G138960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATGCCCTAACCCTACCATCGATCTCCCCAAAAATGCCGTTGCGGAGGTTTCGCATAAAGTTCCCCTTAATGCAGACTTTGTAGGGACCTACATCGCCCCTTATAAAGGAAGCCGCGCTCTCTCTCAAATTTCAGGCTCGGAAGCCAGTTCTGACAAAAATGTATCCATTTCTGCAAATACTACTGCTCAATCGGAACGCGATGGTTCGTGTTTCAAATGCCGGAAATTAGGGCATTGGGCTAGAGACTGCGATGCTCCGGGTGGTGGAGGATCTTTCAGTTCTTCAGGAATGATATGTCTGTTCCGGAGAAAGCATGCCCCTGCGGATCGGGAATTTGTTCAGTATTAA

mRNA sequence

AAATGCCCTAACCCTACCATCGATCTCCCCAAAAATGCCGTTGCGGAGGTTTCGCATAAAGTTCCCCTTAATGCAGACTTTGTAGGGACCTACATCGCCCCTTATAAAGGAAGCCGCGCTCTCTCTCAAATTTCAGGCTCGGAAGCCAGTTCTGACAAAAATGTATCCATTTCTGCAAATACTACTGCTCAATCGGAACGCGATGGTTCGTGTTTCAAATGCCGGAAATTAGGGCATTGGGCTAGAGACTGCGATGCTCCGGGTGGTGGAGGATCTTTCAGTTCTTCAGGAATGATATGTCTGTTCCGGAGAAAGCATGCCCCTGCGGATCGGGAATTTGTTCAGTATTAA

Coding sequence (CDS)

AAATGCCCTAACCCTACCATCGATCTCCCCAAAAATGCCGTTGCGGAGGTTTCGCATAAAGTTCCCCTTAATGCAGACTTTGTAGGGACCTACATCGCCCCTTATAAAGGAAGCCGCGCTCTCTCTCAAATTTCAGGCTCGGAAGCCAGTTCTGACAAAAATGTATCCATTTCTGCAAATACTACTGCTCAATCGGAACGCGATGGTTCGTGTTTCAAATGCCGGAAATTAGGGCATTGGGCTAGAGACTGCGATGCTCCGGGTGGTGGAGGATCTTTCAGTTCTTCAGGAATGATATGTCTGTTCCGGAGAAAGCATGCCCCTGCGGATCGGGAATTTGTTCAGTATTAA

Protein sequence

KCPNPTIDLPKNAVAEVSHKVPLNADFVGTYIAPYKGSRALSQISGSEASSDKNVSISANTTAQSERDGSCFKCRKLGHWARDCDAPGGGGSFSSSGMICLFRRKHAPADREFVQY*
Homology
BLAST of Chy7G138960 vs. ExPASy TrEMBL
Match: A0A0A0KVB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G062410 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 9.7e-43
Identity = 90/95 (94.74%), Postives = 91/95 (95.79%), Query Frame = 0

Query: 3   PNPTIDLPKNAVAEVSHKVPLNADFVGTYIAPYKGSRALSQISGSEASSDKNVSISANTT 62
           PNPTIDLPKNAVAEVSHKVPLNADF+GTYIAPYKGSRALSQISGSEASSDKNVSI  NTT
Sbjct: 25  PNPTIDLPKNAVAEVSHKVPLNADFLGTYIAPYKGSRALSQISGSEASSDKNVSIYENTT 84

Query: 63  AQSERDGSCFKCRKLGHWARDCDAPGGGGSFSSSG 98
           AQSE DGSCFKC KLGHWARDCDAPGGGGSFSSSG
Sbjct: 85  AQSEGDGSCFKCGKLGHWARDCDAPGGGGSFSSSG 119

BLAST of Chy7G138960 vs. ExPASy TrEMBL
Match: A0A6J1EZ11 (cold shock domain-containing protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111437513 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 6.5e-23
Identity = 68/111 (61.26%), Postives = 72/111 (64.86%), Query Frame = 0

Query: 1   KCPNPTIDLPKNAVAEVSHKVPLNADFVGTYIAPYKGSR-ALSQISGSEASSDKNVSISA 60
           K PN TID PK A+AEV+ KV  NAD  G YIA  KG    LSQ+SG  A+S     ISA
Sbjct: 40  KIPNHTIDPPKRAIAEVTSKVSPNADAEGIYIAALKGDPIILSQLSGRIANSGNKGFISA 99

Query: 61  NTT--AQSERDGSCFKCRKLGHWARDCDAPGGGGSFSSSGMICLFRRKHAP 109
           NTT  AQSE  GSCFKC KLGHWARDCDAPG GGSFS SG       K  P
Sbjct: 100 NTTAHAQSEGGGSCFKCGKLGHWARDCDAPGSGGSFSFSGNDTSVAEKSCP 150

BLAST of Chy7G138960 vs. ExPASy TrEMBL
Match: A0A6J1JBZ0 (cold shock domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111483073 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 9.4e-22
Identity = 65/114 (57.02%), Postives = 73/114 (64.04%), Query Frame = 0

Query: 1   KCPNPTIDLPKNAVAEVSHKVPLNADFVGTYIAPYKGSR-ALSQISGSEASSDKNVSISA 60
           K PN TI+ PK A+AEV++KV  N D  G YIA  KG    LSQ+SG  A+S     ISA
Sbjct: 40  KIPNHTINPPKRAIAEVTNKVSPNVDAEGIYIAALKGDPIILSQLSGRIANSGNKGFISA 99

Query: 61  NTT--AQSERDGSCFKCRKLGHWARDCDAPGGGGSFSSSGMICLFRRKHAPADR 112
           NTT  AQS+  GSCFKC KLGHWARDCDAPG GGSFS+S        K  P  R
Sbjct: 100 NTTAHAQSDGGGSCFKCGKLGHWARDCDAPGSGGSFSASENDTSVAEKSCPCGR 153

BLAST of Chy7G138960 vs. ExPASy TrEMBL
Match: A0A6J1C4N6 (DNA-binding protein HEXBP-like OS=Momordica charantia OX=3673 GN=LOC111008238 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.5e-16
Identity = 59/116 (50.86%), Postives = 68/116 (58.62%), Query Frame = 0

Query: 1   KCPNPTIDLPKNAVAEVSHKVPLNADFVGTYIAPYKGSRAL-SQISGSEASS-DKNVS-- 60
           + PN TID PK A+AE            G Y+A  +G   L SQISG  A+S  K V+  
Sbjct: 39  RIPNHTIDPPKMAIAEEPE---------GLYMAALRGKPNLPSQISGGTANSRAKGVAAA 98

Query: 61  ----ISANTTAQSERDGSCFKCRKLGHWARDCDAPGGGGSFSSSGMICLFRRKHAP 109
               +SAN TAQSE  GSCFKC KLGHWARDCDAPGGGGSF ++G       K  P
Sbjct: 99  NRGFVSANPTAQSEGGGSCFKCGKLGHWARDCDAPGGGGSFGTAGTDASVAEKACP 145

BLAST of Chy7G138960 vs. ExPASy TrEMBL
Match: A0A5D3CWZ1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002130 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-07
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0

Query: 66  ERDGSCFKCRKLGHWARDCDAPGGGGSFSSSG 98
           E  G+CFKC KLGHWARDCDAPGGGGSF+SSG
Sbjct: 475 ESHGACFKCGKLGHWARDCDAPGGGGSFNSSG 506

BLAST of Chy7G138960 vs. NCBI nr
Match: KAE8649235.1 (hypothetical protein Csa_015059 [Cucumis sativus])

HSP 1 Score: 181 bits (459), Expect = 9.38e-55
Identity = 92/106 (86.79%), Postives = 93/106 (87.74%), Query Frame = 0

Query: 3   PNPTIDLPKNAVAEVSHKVPLNADFVGTYIAPYKGSRALSQISGSEASSDKNVSISANTT 62
           PNPTIDLPKNAVAEVSHKVPLNADF+GTYIAPYKGSRALSQISGSEASSDKNVSI  NTT
Sbjct: 25  PNPTIDLPKNAVAEVSHKVPLNADFLGTYIAPYKGSRALSQISGSEASSDKNVSIYENTT 84

Query: 63  AQSERDGSCFKCRKLGHWARDCDAPGGGGSFSSSGMICLFRRKHAP 108
           AQSE DGSCFKC KLGHWARDCDAPGGGGSFSSSG       K  P
Sbjct: 85  AQSEGDGSCFKCGKLGHWARDCDAPGGGGSFSSSGNDMSVPDKACP 130

BLAST of Chy7G138960 vs. NCBI nr
Match: XP_004147743.1 (DNA topoisomerase 3-alpha [Cucumis sativus])

HSP 1 Score: 181 bits (459), Expect = 8.14e-54
Identity = 92/106 (86.79%), Postives = 93/106 (87.74%), Query Frame = 0

Query: 3   PNPTIDLPKNAVAEVSHKVPLNADFVGTYIAPYKGSRALSQISGSEASSDKNVSISANTT 62
           PNPTIDLPKNAVAEVSHKVPLNADF+GTYIAPYKGSRALSQISGSEASSDKNVSI  NTT
Sbjct: 25  PNPTIDLPKNAVAEVSHKVPLNADFLGTYIAPYKGSRALSQISGSEASSDKNVSIYENTT 84

Query: 63  AQSERDGSCFKCRKLGHWARDCDAPGGGGSFSSSGMICLFRRKHAP 108
           AQSE DGSCFKC KLGHWARDCDAPGGGGSFSSSG       K  P
Sbjct: 85  AQSEGDGSCFKCGKLGHWARDCDAPGGGGSFSSSGNDMSVPDKACP 130

BLAST of Chy7G138960 vs. NCBI nr
Match: XP_038903890.1 (cold shock domain-containing protein 3-like [Benincasa hispida])

HSP 1 Score: 131 bits (329), Expect = 3.00e-34
Identity = 72/109 (66.06%), Postives = 78/109 (71.56%), Query Frame = 0

Query: 1   KCPNPTIDLPKNAVAEVSHKVPLNADFVGTYIAPYKGSRAL-SQISGSEASSDKNVSISA 60
           K PN  ID PKNAVAEVS K+PLNA+  G YIA  KG+  L SQISG + +S    SISA
Sbjct: 39  KIPNHIIDPPKNAVAEVSDKIPLNAEAEGIYIAALKGNPILLSQISGWKVNSGNKGSISA 98

Query: 61  NTTAQSERDGSCFKCRKLGHWARDCDAPGGGGSFSSSGMICLFRRKHAP 108
           NTTAQSE  GSCFKC KLGHWARDCDAPGGGGSFS+SG       K  P
Sbjct: 99  NTTAQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDASVAEKACP 147

BLAST of Chy7G138960 vs. NCBI nr
Match: XP_023552737.1 (cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116 bits (290), Expect = 1.81e-28
Identity = 69/111 (62.16%), Postives = 73/111 (65.77%), Query Frame = 0

Query: 1   KCPNPTIDLPKNAVAEVSHKVPLNADFVGTYIAPYKGSRA-LSQISGSEASSDKNVSISA 60
           K PN TID PK AVAEV+ KV  NAD  G YIA  KG    LSQ+SG  A+S     ISA
Sbjct: 39  KIPNHTIDPPKRAVAEVTSKVSPNADAEGIYIAALKGDPIILSQLSGRIANSGNKGFISA 98

Query: 61  NTTA--QSERDGSCFKCRKLGHWARDCDAPGGGGSFSSSGMICLFRRKHAP 108
           NTTA  QSE  GSCFKC KLGHWARDCDAPG GGSFS+SG       K  P
Sbjct: 99  NTTAHAQSEGGGSCFKCGKLGHWARDCDAPGSGGSFSASGNDTSVAEKSCP 149

BLAST of Chy7G138960 vs. NCBI nr
Match: KAG6577083.1 (DNA topoisomerase 3-alpha, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115 bits (289), Expect = 2.17e-28
Identity = 68/111 (61.26%), Postives = 73/111 (65.77%), Query Frame = 0

Query: 1   KCPNPTIDLPKNAVAEVSHKVPLNADFVGTYIAPYKGSRA-LSQISGSEASSDKNVSISA 60
           K PN TID PK A+AEV+ KV  NAD  G YIA  KG    LSQ+SG  A+S     ISA
Sbjct: 39  KIPNHTIDPPKRAIAEVTSKVSPNADAEGIYIAALKGDPIILSQLSGRIANSGNKGFISA 98

Query: 61  NTTA--QSERDGSCFKCRKLGHWARDCDAPGGGGSFSSSGMICLFRRKHAP 108
           NTTA  QSE  GSCFKC KLGHWARDCDAPG GGSFS+SG       K  P
Sbjct: 99  NTTAHAQSEGGGSCFKCGKLGHWARDCDAPGSGGSFSASGNDTSVAEKSCP 149

BLAST of Chy7G138960 vs. TAIR 10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 42.7 bits (99), Expect = 2.3e-04
Identity = 18/33 (54.55%), Postives = 22/33 (66.67%), Query Frame = 0

Query: 68  DGSCFKCRKLGHWARDCDAPGGG-----GSFSS 96
           +  CFKC ++GHWARDC + GGG     G FSS
Sbjct: 125 EDECFKCGRVGHWARDCPSAGGGRGGPVGGFSS 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KVB69.7e-4394.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G062410 PE=4 SV=1[more]
A0A6J1EZ116.5e-2361.26cold shock domain-containing protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1JBZ09.4e-2257.02cold shock domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1C4N63.5e-1650.86DNA-binding protein HEXBP-like OS=Momordica charantia OX=3673 GN=LOC111008238 PE... [more]
A0A5D3CWZ11.7e-0784.38Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00213... [more]
Match NameE-valueIdentityDescription
KAE8649235.19.38e-5586.79hypothetical protein Csa_015059 [Cucumis sativus][more]
XP_004147743.18.14e-5486.79DNA topoisomerase 3-alpha [Cucumis sativus][more]
XP_038903890.13.00e-3466.06cold shock domain-containing protein 3-like [Benincasa hispida][more]
XP_023552737.11.81e-2862.16cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo][more]
KAG6577083.12.17e-2861.26DNA topoisomerase 3-alpha, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
AT5G04280.12.3e-0454.55RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 70..86
e-value: 0.0012
score: 28.1
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 70..85
e-value: 8.2E-7
score: 28.8
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 71..84
score: 9.619753
NoneNo IPR availableGENE3D4.10.60.10coord: 62..98
e-value: 1.1E-7
score: 33.3
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 63..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy7G138960.1Chy7G138960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding