Chy7G138960 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAATGCCCTAACCCTACCATCGATCTCCCCAAAAATGCCGTTGCGGAGGTTTCGCATAAAGTTCCCCTTAATGCAGACTTTGTAGGGACCTACATCGCCCCTTATAAAGGAAGCCGCGCTCTCTCTCAAATTTCAGGCTCGGAAGCCAGTTCTGACAAAAATGTATCCATTTCTGCAAATACTACTGCTCAATCGGAACGCGATGGTTCGTGTTTCAAATGCCGGAAATTAGGGCATTGGGCTAGAGACTGCGATGCTCCGGGTGGTGGAGGATCTTTCAGTTCTTCAGGAATGATATGTCTGTTCCGGAGAAAGCATGCCCCTGCGGATCGGGAATTTGTTCAGTATTAA AAATGCCCTAACCCTACCATCGATCTCCCCAAAAATGCCGTTGCGGAGGTTTCGCATAAAGTTCCCCTTAATGCAGACTTTGTAGGGACCTACATCGCCCCTTATAAAGGAAGCCGCGCTCTCTCTCAAATTTCAGGCTCGGAAGCCAGTTCTGACAAAAATGTATCCATTTCTGCAAATACTACTGCTCAATCGGAACGCGATGGTTCGTGTTTCAAATGCCGGAAATTAGGGCATTGGGCTAGAGACTGCGATGCTCCGGGTGGTGGAGGATCTTTCAGTTCTTCAGGAATGATATGTCTGTTCCGGAGAAAGCATGCCCCTGCGGATCGGGAATTTGTTCAGTATTAA AAATGCCCTAACCCTACCATCGATCTCCCCAAAAATGCCGTTGCGGAGGTTTCGCATAAAGTTCCCCTTAATGCAGACTTTGTAGGGACCTACATCGCCCCTTATAAAGGAAGCCGCGCTCTCTCTCAAATTTCAGGCTCGGAAGCCAGTTCTGACAAAAATGTATCCATTTCTGCAAATACTACTGCTCAATCGGAACGCGATGGTTCGTGTTTCAAATGCCGGAAATTAGGGCATTGGGCTAGAGACTGCGATGCTCCGGGTGGTGGAGGATCTTTCAGTTCTTCAGGAATGATATGTCTGTTCCGGAGAAAGCATGCCCCTGCGGATCGGGAATTTGTTCAGTATTAA KCPNPTIDLPKNAVAEVSHKVPLNADFVGTYIAPYKGSRALSQISGSEASSDKNVSISANTTAQSERDGSCFKCRKLGHWARDCDAPGGGGSFSSSGMICLFRRKHAPADREFVQY* Homology
BLAST of Chy7G138960 vs. ExPASy TrEMBL
Match: A0A0A0KVB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G062410 PE=4 SV=1) HSP 1 Score: 182.6 bits (462), Expect = 9.7e-43 Identity = 90/95 (94.74%), Postives = 91/95 (95.79%), Query Frame = 0
BLAST of Chy7G138960 vs. ExPASy TrEMBL
Match: A0A6J1EZ11 (cold shock domain-containing protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111437513 PE=4 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 6.5e-23 Identity = 68/111 (61.26%), Postives = 72/111 (64.86%), Query Frame = 0
BLAST of Chy7G138960 vs. ExPASy TrEMBL
Match: A0A6J1JBZ0 (cold shock domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111483073 PE=4 SV=1) HSP 1 Score: 112.8 bits (281), Expect = 9.4e-22 Identity = 65/114 (57.02%), Postives = 73/114 (64.04%), Query Frame = 0
BLAST of Chy7G138960 vs. ExPASy TrEMBL
Match: A0A6J1C4N6 (DNA-binding protein HEXBP-like OS=Momordica charantia OX=3673 GN=LOC111008238 PE=4 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 3.5e-16 Identity = 59/116 (50.86%), Postives = 68/116 (58.62%), Query Frame = 0
BLAST of Chy7G138960 vs. ExPASy TrEMBL
Match: A0A5D3CWZ1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002130 PE=4 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 1.7e-07 Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0
BLAST of Chy7G138960 vs. NCBI nr
Match: KAE8649235.1 (hypothetical protein Csa_015059 [Cucumis sativus]) HSP 1 Score: 181 bits (459), Expect = 9.38e-55 Identity = 92/106 (86.79%), Postives = 93/106 (87.74%), Query Frame = 0
BLAST of Chy7G138960 vs. NCBI nr
Match: XP_004147743.1 (DNA topoisomerase 3-alpha [Cucumis sativus]) HSP 1 Score: 181 bits (459), Expect = 8.14e-54 Identity = 92/106 (86.79%), Postives = 93/106 (87.74%), Query Frame = 0
BLAST of Chy7G138960 vs. NCBI nr
Match: XP_038903890.1 (cold shock domain-containing protein 3-like [Benincasa hispida]) HSP 1 Score: 131 bits (329), Expect = 3.00e-34 Identity = 72/109 (66.06%), Postives = 78/109 (71.56%), Query Frame = 0
BLAST of Chy7G138960 vs. NCBI nr
Match: XP_023552737.1 (cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 116 bits (290), Expect = 1.81e-28 Identity = 69/111 (62.16%), Postives = 73/111 (65.77%), Query Frame = 0
BLAST of Chy7G138960 vs. NCBI nr
Match: KAG6577083.1 (DNA topoisomerase 3-alpha, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 115 bits (289), Expect = 2.17e-28 Identity = 68/111 (61.26%), Postives = 73/111 (65.77%), Query Frame = 0
BLAST of Chy7G138960 vs. TAIR 10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain ) HSP 1 Score: 42.7 bits (99), Expect = 2.3e-04 Identity = 18/33 (54.55%), Postives = 22/33 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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