Chy7G136950 (gene) Cucumber (hystrix) v1

Overview


Name	Chy7G136950
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Plant transposase
Location	chrH07: 11562942 .. 11563460 (+)
RNA-Seq Expression	Chy7G136950
Synteny	Chy7G136950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCATTAGACTCACCTGCTGCTCGTACTAGATCAGCTGTGCGTAAATTACCCATTGAAGAGGTTCTACCTGAGTCAGAGGAAAATGAAAATGTGGATCGTGAGGAAGTTCATACCAAGGAAGTAGGTCCCAAAAAGACAAGAGGTAAGACAAAGATGAAAACGATAGCAATGGAGCCTAAAATGAAAGTAAATGTAAGGTACAACAAATATGGACAACCTATTGGAGAAACATCAGTTGGGTTGTCCTCATTTTTGGGTTCACTGTTCAGAGAAGTGGCACCAGTGAATGTTGAATCTTGGAAGAAACTTTCAACCTGACAAAAATAAATATTGTGGCATTCTATTCAAGTAAGTAATTTATAATTATATTTATATAATGAGTATAATTTGAGCTTTCTTATATATGATCACTACCTAAATGATTTTATTCTTTAGGCACGATATAATGTTGATGAATGGCAAAAGAAATATTTATTCCAAAAGATGGATGGATTGTGGAGAGCAAGCAAATCTAGCTG

mRNA sequence

GCCATTAGACTCACCTGCTGCTCGTACTAGATCAGCTGTGCGTAAATTACCCATTGAAGAGGTTCTACCTGAGTCAGAGGAAAATGAAAATGTGGATCGTGAGGAAGTTCATACCAAGGAAGTAGGTCCCAAAAAGACAAGAGGTAAGACAAAGATGAAAACGATAGCAATGGAGCCTAAAATGAAAGTAAATGTAAGGCACGATATAATGTTGATGAATGGCAAAAGAAATATTTATTCCAAAAGATGGATGGATTGTGGAGAGCAAGCAAATCTAGCTG

Coding sequence (CDS)

GCCATTAGACTCACCTGCTGCTCGTACTAGATCAGCTGTGCGTAAATTACCCATTGAAGAGGTTCTACCTGAGTCAGAGGAAAATGAAAATGTGGATCGTGAGGAAGTTCATACCAAGGAAGTAGGTCCCAAAAAGACAAGAGGTAAGACAAAGATGAAAACGATAGCAATGGAGCCTAAAATGAAAGTAAATGTAAGGCACGATATAATGTTGATGAATGGCAAAAGAAATATTTATTCCAAAAGATGGATGGATTGTGGAGAGCAAGCAAATCTAGCTG

Protein sequence

AIRLTCCSY*ISCA*ITH*RGST*VRGK*KCGS*GSSYQGSRSQKDKR*DKDENDSNGA*NESKCKARYNVDEWQKKYLFQKMDGLWRASKSSX

Homology

[Close]

BLAST of Chy7G136950 vs. ExPASy TrEMBL
Match: A0A5A7UVF2 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003770 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 66  KARYNVDEWQKKYLFQKMDGLWRASKS 93
           +ARYNVDEWQKK+LFQKM GLWRASKS
Sbjct: 178 QARYNVDEWQKKFLFQKMGGLWRASKS 204

[Close]

BLAST of Chy7G136950 vs. ExPASy TrEMBL
Match: A0A5A7UI65 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11091G00020 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 66  KARYNVDEWQKKYLFQKMDGLWRASKS 93
           +ARYNVDEWQKK+LFQKM GLWRASKS
Sbjct: 178 QARYNVDEWQKKFLFQKMGGLWRASKS 204

[Close]

BLAST of Chy7G136950 vs. ExPASy TrEMBL
Match: A0A5A7TIU1 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002550 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 66  KARYNVDEWQKKYLFQKMDGLWRASKS 93
           +ARYNVDEWQKK+LFQKM GLWRASKS
Sbjct: 178 QARYNVDEWQKKFLFQKMGGLWRASKS 204

[Close]

BLAST of Chy7G136950 vs. ExPASy TrEMBL
Match: A0A5A7SRN7 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00120 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 66  KARYNVDEWQKKYLFQKMDGLWRASKS 93
           +ARYNVDEWQKK+LFQKM GLWRASKS
Sbjct: 178 QARYNVDEWQKKFLFQKMGGLWRASKS 204

[Close]

BLAST of Chy7G136950 vs. ExPASy TrEMBL
Match: A0A5A7TLJ2 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G003690 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 66  KARYNVDEWQKKYLFQKMDGLWRASKS 93
           +ARYNVDEWQKK+LFQKM GLWRASKS
Sbjct: 178 QARYNVDEWQKKFLFQKMGGLWRASKS 204

[Close]

BLAST of Chy7G136950 vs. NCBI nr
Match: KAA0041269.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 1.78e-06
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 67  ARYNVDEWQKKYLFQKMDGLWRASKS 92
           ARYNVDEWQKK+LFQKM GLWRASKS
Sbjct: 179 ARYNVDEWQKKFLFQKMGGLWRASKS 204

[Close]

BLAST of Chy7G136950 vs. NCBI nr
Match: KAA0053956.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 1.84e-06
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 67  ARYNVDEWQKKYLFQKMDGLWRASKS 92
           ARYNVDEWQKK+LFQKM GLWRASKS
Sbjct: 179 ARYNVDEWQKKFLFQKMGGLWRASKS 204

[Close]

BLAST of Chy7G136950 vs. NCBI nr
Match: KAA0032201.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 2.23e-06
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 67  ARYNVDEWQKKYLFQKMDGLWRASKS 92
           ARYNVDEWQKK+LFQKM GLWRASKS
Sbjct: 179 ARYNVDEWQKKFLFQKMGGLWRASKS 204

[Close]

BLAST of Chy7G136950 vs. NCBI nr
Match: KAA0057491.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 2.23e-06
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 67  ARYNVDEWQKKYLFQKMDGLWRASKS 92
           ARYNVDEWQKK+LFQKM GLWRASKS
Sbjct: 179 ARYNVDEWQKKFLFQKMGGLWRASKS 204

[Close]

BLAST of Chy7G136950 vs. NCBI nr
Match: KAA0042856.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 2.25e-06
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 67  ARYNVDEWQKKYLFQKMDGLWRASKS 92
           ARYNVDEWQKK+LFQKM GLWRASKS
Sbjct: 179 ARYNVDEWQKKFLFQKMGGLWRASKS 204

The following BLAST results are available for this feature:

BLAST of Chy7G136950 vs.


Match Name	E-value	Identity	Description

BLAST of Chy7G136950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UVF2	1.1e-04	88.89	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G00...	[more]
A0A5A7UI65	1.1e-04	88.89	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11091G...	[more]
A0A5A7TIU1	1.1e-04	88.89	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00...	[more]
A0A5A7SRN7	1.1e-04	88.89	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00...	[more]
A0A5A7TLJ2	1.1e-04	88.89	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G003...	[more]

BLAST of Chy7G136950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041269.1	1.78e-06	92.31	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0053956.1	1.84e-06	92.31	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0032201.1	2.23e-06	92.31	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0057491.1	2.23e-06	92.31	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0042856.1	2.25e-06	92.31	Plant transposase [Cucumis melo var. makuwa]	[more]

BLAST of Chy7G136950 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy7G136950.1	Chy7G136950.1	mRNA