Chy7G136050 (gene) Cucumber (hystrix) v1

Overview


Name	Chy7G136050
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	DUF4283 domain-containing protein
Location	chrH07: 8886243 .. 8886398 (+)
RNA-Seq Expression	Chy7G136050
Synteny	Chy7G136050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTGGGGATAGAATCGAGTTTCGTTGTAGTTGCTAGTGTTGTTGGTAAGCCTCTATCTTTGGATTTGGCCACCAAAGAAAGACGTAGATTGTCATATGCTTGTGTGTGTGTTGAATTAGATGGAAATTCCAATATGCCTTCCGAGATTACG

mRNA sequence

ATGGAGTTGGGGATAGAATCGAGTTTCGTTGTAGTTGCTAGTGTTGTTGGTAAGCCTCTATCTTTGGATTTGGCCACCAAAGAAAGACGTAGATTGTCATATGCTTGTGTGTGTGTTGAATTAGATGGAAATTCCAATATGCCTTCCGAGATTACG

Coding sequence (CDS)

ATGGAGTTGGGGATAGAATCGAGTTTCGTTGTAGTTGCTAGTGTTGTTGGTAAGCCTCTATCTTTGGATTTGGCCACCAAAGAAAGACGTAGATTGTCATATGCTTGTGTGTGTGTTGAATTAGATGGAAATTCCAATATGCCTTCCGAGATTACG

Protein sequence

MELGIESSFVVVASVVGKPLSLDLATKERRRLSYACVCVELDGNSNMPSEIT

Homology

[Close]

BLAST of Chy7G136050 vs. ExPASy TrEMBL
Match: A0A5D3DSG9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003060 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-12
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1   MELGIESSFVVVASVVGKPLSLDLATKERRRLSYACVCVELDGNSNMPSEIT 53
           MEL  E+   VVA  VGKP+SLDLATKERRRLSYA VCVEL+G SNMPSEIT
Sbjct: 288 MELWTEAGLAVVAGAVGKPISLDLATKERRRLSYARVCVELEGGSNMPSEIT 339

[Close]

BLAST of Chy7G136050 vs. ExPASy TrEMBL
Match: A0A5A7V507 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00710 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-12
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1   MELGIESSFVVVASVVGKPLSLDLATKERRRLSYACVCVELDGNSNMPSEIT 53
           MEL  E+   VVA  VGKP+SLDLATKERRRLSYA VCVEL+G SNMPSEIT
Sbjct: 491 MELWTEAGLAVVAGAVGKPISLDLATKERRRLSYARVCVELEGGSNMPSEIT 542

[Close]

BLAST of Chy7G136050 vs. ExPASy TrEMBL
Match: A0A1S3CC83 (uncharacterized protein LOC103499323 OS=Cucumis melo OX=3656 GN=LOC103499323 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-12
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1   MELGIESSFVVVASVVGKPLSLDLATKERRRLSYACVCVELDGNSNMPSEIT 53
           MEL  E+   VVA  VGKP+SLDLATKERRRLSYA VCVEL+G SNMPSEIT
Sbjct: 372 MELWTEAGLAVVAGAVGKPISLDLATKERRRLSYARVCVELEGGSNMPSEIT 423

[Close]

BLAST of Chy7G136050 vs. ExPASy TrEMBL
Match: A0A5D3DT40 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002880 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.9e-12
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1   MELGIESSFVVVASVVGKPLSLDLATKERRRLSYACVCVELDGNSNMPSEIT 53
           MEL IE+   VVAS VGKP+SLDLATKE RRLSYA VCVEL G SNMP+EIT
Sbjct: 188 MELWIEAGLAVVASAVGKPISLDLATKEHRRLSYARVCVELKGKSNMPAEIT 239

[Close]

BLAST of Chy7G136050 vs. ExPASy TrEMBL
Match: A0A5A7TVB8 (Putative non-LTR retroelement reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00750 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.7e-12
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MELGIESSFVVVASVVGKPLSLDLATKERRRLSYACVCVELDGNSNMPSEIT 53
           MEL  E+   VVASVVGKPL+LDLATKERRRLSYA VCVELD +S+MP+EIT
Sbjct: 68  MELWTEAGLAVVASVVGKPLTLDLATKERRRLSYARVCVELDVDSHMPAEIT 119

[Close]

BLAST of Chy7G136050 vs. NCBI nr
Match: TYK26656.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 3.89e-16
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1   MELGIESSFVVVASVVGKPLSLDLATKERRRLSYACVCVELDGNSNMPSEIT 52
           MEL  E+   VVA  VGKP+SLDLATKERRRLSYA VCVEL+G SNMPSEIT
Sbjct: 288 MELWTEAGLAVVAGAVGKPISLDLATKERRRLSYARVCVELEGGSNMPSEIT 339

[Close]

BLAST of Chy7G136050 vs. NCBI nr
Match: XP_008460524.1 (PREDICTED: uncharacterized protein LOC103499323 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 4.55e-16
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1   MELGIESSFVVVASVVGKPLSLDLATKERRRLSYACVCVELDGNSNMPSEIT 52
           MEL  E+   VVA  VGKP+SLDLATKERRRLSYA VCVEL+G SNMPSEIT
Sbjct: 372 MELWTEAGLAVVAGAVGKPISLDLATKERRRLSYARVCVELEGGSNMPSEIT 423

[Close]

BLAST of Chy7G136050 vs. NCBI nr
Match: KAA0062320.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 4.68e-16
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1   MELGIESSFVVVASVVGKPLSLDLATKERRRLSYACVCVELDGNSNMPSEIT 52
           MEL  E+   VVA  VGKP+SLDLATKERRRLSYA VCVEL+G SNMPSEIT
Sbjct: 491 MELWTEAGLAVVAGAVGKPISLDLATKERRRLSYARVCVELEGGSNMPSEIT 542

[Close]

BLAST of Chy7G136050 vs. NCBI nr
Match: TYK26642.1 (uncharacterized protein E5676_scaffold313G002880 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 8.60e-16
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1   MELGIESSFVVVASVVGKPLSLDLATKERRRLSYACVCVELDGNSNMPSEIT 52
           MEL IE+   VVAS VGKP+SLDLATKE RRLSYA VCVEL G SNMP+EIT
Sbjct: 188 MELWIEAGLAVVASAVGKPISLDLATKEHRRLSYARVCVELKGKSNMPAEIT 239

[Close]

BLAST of Chy7G136050 vs. NCBI nr
Match: XP_008463187.1 (PREDICTED: uncharacterized protein LOC103501395 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 2.23e-15
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1   MELGIESSFVVVASVVGKPLSLDLATKERRRLSYACVCVELDGNSNMPSEIT 52
           MEL  E+   VVAS VGKP+SLDLATKERRRLSYA VCVEL+  SNMP+EIT
Sbjct: 252 MELWTEAGLAVVASAVGKPISLDLATKERRRLSYARVCVELEAGSNMPAEIT 303

The following BLAST results are available for this feature:

BLAST of Chy7G136050 vs.


Match Name	E-value	Identity	Description

BLAST of Chy7G136050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DSG9	2.3e-12	76.92	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V507	2.3e-12	76.92	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A1S3CC83	2.3e-12	76.92	uncharacterized protein LOC103499323 OS=Cucumis melo OX=3656 GN=LOC103499323 PE=...	[more]
A0A5D3DT40	3.9e-12	76.92	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TVB8	8.7e-12	76.92	Putative non-LTR retroelement reverse transcriptase OS=Cucumis melo var. makuwa ...	[more]

BLAST of Chy7G136050 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK26656.1	3.89e-16	76.92	DUF4283 domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_008460524.1	4.55e-16	76.92	PREDICTED: uncharacterized protein LOC103499323 [Cucumis melo]	[more]
KAA0062320.1	4.68e-16	76.92	DUF4283 domain-containing protein [Cucumis melo var. makuwa]	[more]
TYK26642.1	8.60e-16	76.92	uncharacterized protein E5676_scaffold313G002880 [Cucumis melo var. makuwa]	[more]
XP_008463187.1	2.23e-15	75.00	PREDICTED: uncharacterized protein LOC103501395 [Cucumis melo]	[more]

BLAST of Chy7G136050 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy7G136050.1	Chy7G136050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003964	RNA-directed DNA polymerase activity