Chy7G135360 (gene) Cucumber (hystrix) v1

Overview


Name	Chy7G135360
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	ribosomal protein-related
Location	chrH07: 6940080 .. 6941515 (-)
RNA-Seq Expression	Chy7G135360
Synteny	Chy7G135360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATTCAGGTTCACCAGCGCCTCCAAATTTTCTCCCAAAAGGTGAAGACAACATTTCTCCTACAGTAAGAAGTAGGAGAAAGCCTCCTTCCCCACAGGAACTCATATCCCACTACGAATCCCAAGGCCTTACTTCTCATGATGCTTCAATCAAGGTAATTGATGACCTTCAGAATGCTCTCTTCAGAATCATCTCCTCCGGCAGAGGCAACAAGGACAAGCGTCTGCTCGAGACCTCCAGGAAACTCGATGCTACCAATAGTCGTCTTGCCGTTCTCGACCTGAAGTTGGATTCCAAGCCAGGTTACGCCGAGACTTTTGCCCTAGGTTTGGCTTCTGGGTCTGTTTTGAATGGGTTTGGGACTGTGATGCCCCATGTTTTTGGGGCTCTCACCAATATTTGGAGTTCTGTTACTAATCTTACCAAGCATTCTTGAATTTTGATTGATACAAAACTAGTCTTCGCTTTTGTGGTTTTGTTTTTCTATTTAGTTCGATCAGGTGGTTGATAGTTGTTTTTGTTGGTTAGATACTCAGGAAATCCTAATATTTGAGTTTGAGCTATGCCTTTTCTTTTCCCCCTTCTTGGATTGGTCTTTCATGATTCACATTTCACTTCGAACAATGATTTCTCGAATTTCATGTAGGGTTCTTCCTCCTCCATAACAATTCAATAAAGTTAATTAAAAAGAAATGATAAAAATGTCCAAATCACTTCAAAAATGCTTTTAGAATTCGTTTTTCGGTGTAAAATTAAGATGTGTTTCAGAGTGATTCTCGAAATGAGATTGACTCAATGGTGGTTTAATCTTTTCACCCATAATTGTTGTAATAAAAAAACATGGTAAAATTGATTATAACTATATCTAAATCACTCCAAAACGTTCACGGAAGGTGATTCTAGCAAGGCGCATAAGAATAATAGTCACCCTGCCTCGTGGGATTAAGTGGCAAATTAGGCTTGAGATTTTCAATTCCAACATTACCTTTTCCAGATGGCACTGTTCTCTTTTACAGGGGAAGTAAAGGAGGCTGACTATCTTTACGATATCTTGAACAAGGGCTTCCAGCCAGGTTACCCTCTCACTAAGAGTTGGTGTTACTTATATTCCAGCTCCACAATACTGCTTTGGATGGTGGCCATTCTATTCTGAAAGTACTCAAGTACAGAAGTTAATTTTTGCTTTTCCGAAATGAATTTATTAGATTCAAAGACAAATTAGGACTTAGGAGTGGGTAAGAACTTGTGCAAGGGAGTAGGTATCTCCTTCCTAAGTTTTCTTAGGCATGCTGATATATGTGATGAGATGACTGCTTTGATTTGCCTGTTGGTGTGTGCACATGGATAAATTAGTTTGATTCGGTGGGTTGAAATGAGGTATATTTGGGTTTAATTACAGGCCTTCTGGTCTGTCACAACCATGAGGAGTAG

mRNA sequence

ATGGAAGATTCAGGTTCACCAGCGCCTCCAAATTTTCTCCCAAAAGGTGAAGACAACATTTCTCCTACAGTAAGAAGTAGGAGAAAGCCTCCTTCCCCACAGGAACTCATATCCCACTACGAATCCCAAGGCCTTACTTCTCATGATGCTTCAATCAAGGTAATTGATGACCTTCAGAATGCTCTCTTCAGAATCATCTCCTCCGGCAGAGGCAACAAGGACAAGCGTCTGCTCGAGACCTCCAGGAAACTCGATGCTACCAATAGTCGTCTTGCCGTTCTCGACCTGAAGTTGGATTCCAAGCCAGGTTACGCCGAGACTTTTGCCCTAGGGGAAGTAAAGGAGGCTGACTATCTTTACGATATCTTGAACAAGGGCTTCCAGCCAGGCCTTCTGGTCTGTCACAACCATGAGGAGTAG

Coding sequence (CDS)

ATGGAAGATTCAGGTTCACCAGCGCCTCCAAATTTTCTCCCAAAAGGTGAAGACAACATTTCTCCTACAGTAAGAAGTAGGAGAAAGCCTCCTTCCCCACAGGAACTCATATCCCACTACGAATCCCAAGGCCTTACTTCTCATGATGCTTCAATCAAGGTAATTGATGACCTTCAGAATGCTCTCTTCAGAATCATCTCCTCCGGCAGAGGCAACAAGGACAAGCGTCTGCTCGAGACCTCCAGGAAACTCGATGCTACCAATAGTCGTCTTGCCGTTCTCGACCTGAAGTTGGATTCCAAGCCAGGTTACGCCGAGACTTTTGCCCTAGGGGAAGTAAAGGAGGCTGACTATCTTTACGATATCTTGAACAAGGGCTTCCAGCCAGGCCTTCTGGTCTGTCACAACCATGAGGAGTAG

Protein sequence

MEDSGSPAPPNFLPKGEDNISPTVRSRRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALGEVKEADYLYDILNKGFQPGLLVCHNHEE*

Homology

[Close]

BLAST of Chy7G135360 vs. ExPASy TrEMBL
Match: A0A0A0L3B6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G385280 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.0e-50
Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 1   MEDSGSPAPPNFLPKGEDNISPTVRSRRKPPSPQELISHYESQGLTSHDASIKVIDDLQN 60
           MEDSGSPA PN LPKG+DNISPTVRS RKPPSPQELISHYESQGLTSHDASIKVIDDLQN
Sbjct: 1   MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQN 60

Query: 61  ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 112
           ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG
Sbjct: 61  ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 111

[Close]

BLAST of Chy7G135360 vs. ExPASy TrEMBL
Match: A0A5A7VAF7 (Putative ribosomal-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00060 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 7.7e-47
Identity = 100/111 (90.09%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MEDSGSPAPPNFLPKGEDNISPTVRSRRKPPSPQELISHYESQGLTSHDASIKVIDDLQN 60
           MEDSGSPAPPN LP+ + NISP VRSRRKPPSPQELISHYESQG TSHDASIKVIDDLQN
Sbjct: 1   MEDSGSPAPPNSLPQAQHNISPAVRSRRKPPSPQELISHYESQGHTSHDASIKVIDDLQN 60

Query: 61  ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 112
           ALF+IISSGRG KDK LLETSRK+DATNSRLAVLDLKLDSKPGYAETFALG
Sbjct: 61  ALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALG 111

[Close]

BLAST of Chy7G135360 vs. ExPASy TrEMBL
Match: A0A1S4DV46 (uncharacterized protein LOC103487537 OS=Cucumis melo OX=3656 GN=LOC103487537 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 7.7e-47
Identity = 100/111 (90.09%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MEDSGSPAPPNFLPKGEDNISPTVRSRRKPPSPQELISHYESQGLTSHDASIKVIDDLQN 60
           MEDSGSPAPPN LP+ + NISP VRSRRKPPSPQELISHYESQG TSHDASIKVIDDLQN
Sbjct: 1   MEDSGSPAPPNSLPQAQHNISPAVRSRRKPPSPQELISHYESQGHTSHDASIKVIDDLQN 60

Query: 61  ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 112
           ALF+IISSGRG KDK LLETSRK+DATNSRLAVLDLKLDSKPGYAETFALG
Sbjct: 61  ALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALG 111

[Close]

BLAST of Chy7G135360 vs. ExPASy TrEMBL
Match: A0A6J1J075 (uncharacterized protein LOC111480022 OS=Cucurbita maxima OX=3661 GN=LOC111480022 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.7e-36
Identity = 84/114 (73.68%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 1   MEDSGSPAPPNFLPKGEDNISPTVRS---RRKPPSPQELISHYESQGLTSHDASIKVIDD 60
           M DS SPA  N LP+  +  +P   S   RRK PSPQEL+SHYESQGLTSHDASIKVI+D
Sbjct: 1   MADSNSPATQNSLPQDNNTATPMASSGAQRRKLPSPQELVSHYESQGLTSHDASIKVIED 60

Query: 61  LQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 112
           LQNAL RIISSGRG KDK L++TSRK+DATN+RLA+LDLKLDSKPGYA+TFALG
Sbjct: 61  LQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALG 114

[Close]

BLAST of Chy7G135360 vs. ExPASy TrEMBL
Match: A0A6J1GTX5 (uncharacterized protein LOC111457504 OS=Cucurbita moschata OX=3662 GN=LOC111457504 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 6.2e-36
Identity = 84/115 (73.04%), Postives = 95/115 (82.61%), Query Frame = 0


Query: 1   MEDSGSPAPPNFLPKGEDNISPTVRS----RRKPPSPQELISHYESQGLTSHDASIKVID 60
           M DS SPA  N LP+  +  +P   S    RRK PSPQEL+SHYESQGLTSHDASIKVI+
Sbjct: 1   MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60

Query: 61  DLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 112
           DLQNAL RIISSGRG KDK L++TSRK+DATN+RLA+LDLKLDSKPGYA+TFALG
Sbjct: 61  DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALG 115

[Close]

BLAST of Chy7G135360 vs. NCBI nr
Match: KAE8649640.1 (hypothetical protein Csa_012725 [Cucumis sativus])

HSP 1 Score: 248 bits (632), Expect = 6.36e-82
Identity = 125/130 (96.15%), Postives = 126/130 (96.92%), Query Frame = 0


Query: 1   MEDSGSPAPPNFLPKGEDNISPTVRSRRKPPSPQELISHYESQGLTSHDASIKVIDDLQN 60
           MEDSGSPA PN LPKG+DNISPTVRS RKPPSPQELISHYESQGLTSHDASIKVIDDLQN
Sbjct: 1   MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQN 60

Query: 61  ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALGEVKEADYLY 120
           ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALGEVKE DYLY
Sbjct: 61  ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALGEVKEGDYLY 120

Query: 121 DILNKGFQPG 130
           DILNKGFQPG
Sbjct: 121 DILNKGFQPG 130

[Close]

BLAST of Chy7G135360 vs. NCBI nr
Match: XP_011653828.1 (uncharacterized protein LOC101209567 [Cucumis sativus])

HSP 1 Score: 209 bits (533), Expect = 5.02e-67
Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 1   MEDSGSPAPPNFLPKGEDNISPTVRSRRKPPSPQELISHYESQGLTSHDASIKVIDDLQN 60
           MEDSGSPA PN LPKG+DNISPTVRS RKPPSPQELISHYESQGLTSHDASIKVIDDLQN
Sbjct: 1   MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQN 60

Query: 61  ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 111
           ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG
Sbjct: 61  ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 111

[Close]

BLAST of Chy7G135360 vs. NCBI nr
Match: XP_016899843.1 (PREDICTED: uncharacterized protein LOC103487537 [Cucumis melo] >KAA0064210.1 putative ribosomal-like protein [Cucumis melo var. makuwa] >TYK02818.1 putative ribosomal-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 197 bits (502), Expect = 2.65e-62
Identity = 100/111 (90.09%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MEDSGSPAPPNFLPKGEDNISPTVRSRRKPPSPQELISHYESQGLTSHDASIKVIDDLQN 60
           MEDSGSPAPPN LP+ + NISP VRSRRKPPSPQELISHYESQG TSHDASIKVIDDLQN
Sbjct: 1   MEDSGSPAPPNSLPQAQHNISPAVRSRRKPPSPQELISHYESQGHTSHDASIKVIDDLQN 60

Query: 61  ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 111
           ALF+IISSGRG KDK LLETSRK+DATNSRLAVLDLKLDSKPGYAETFALG
Sbjct: 61  ALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALG 111

[Close]

BLAST of Chy7G135360 vs. NCBI nr
Match: XP_038893730.1 (uncharacterized protein LOC120082569 [Benincasa hispida])

HSP 1 Score: 169 bits (429), Expect = 3.87e-51
Identity = 88/114 (77.19%), Postives = 97/114 (85.09%), Query Frame = 0


Query: 1   MEDSGSPAPPNFLPKGEDNISPTVRS---RRKPPSPQELISHYESQGLTSHDASIKVIDD 60
           M +S S APPN LP+     +P   S   RRKPPSPQELISHYESQGLTSHDASIKVI+D
Sbjct: 1   MGESHSSAPPNSLPQDNSTANPMTSSGTRRRKPPSPQELISHYESQGLTSHDASIKVIED 60

Query: 61  LQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 111
           LQNALFRIISSGRG KDK L+ETSRK+DATN+RLA+LDLKLDSKPGYAE+FALG
Sbjct: 61  LQNALFRIISSGRGKKDKLLVETSRKIDATNNRLAILDLKLDSKPGYAESFALG 114

[Close]

BLAST of Chy7G135360 vs. NCBI nr
Match: XP_022980748.1 (uncharacterized protein LOC111480022 [Cucurbita maxima])

HSP 1 Score: 162 bits (409), Expect = 4.25e-48
Identity = 84/114 (73.68%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 1   MEDSGSPAPPNFLPKGEDNISPTVRS---RRKPPSPQELISHYESQGLTSHDASIKVIDD 60
           M DS SPA  N LP+  +  +P   S   RRK PSPQEL+SHYESQGLTSHDASIKVI+D
Sbjct: 1   MADSNSPATQNSLPQDNNTATPMASSGAQRRKLPSPQELVSHYESQGLTSHDASIKVIED 60

Query: 61  LQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 111
           LQNAL RIISSGRG KDK L++TSRK+DATN+RLA+LDLKLDSKPGYA+TFALG
Sbjct: 61  LQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALG 114

[Close]

BLAST of Chy7G135360 vs. TAIR 10
Match: AT1G16790.1 (ribosomal protein-related )

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-22
Identity = 57/106 (53.77%), Postives = 74/106 (69.81%), Query Frame = 0


Query: 7   PAPPNFLPKGEDNISPTVRSRRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRII 66
           PA PN     E+  S   +  +K P+P ELISHY+ +GL   +ASIKVI+DLQNAL R++
Sbjct: 4   PATPN---AAEETKSEQKQKSKKFPTPTELISHYQKRGLEPAEASIKVIEDLQNALVRVV 63

Query: 67  SSGRGNKDK-RLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALG 112
           SS R    K +L+  +RK+DA N RLAV+D KL++KPGY ETFALG
Sbjct: 64  SSSRNASSKDKLVTDARKIDAINGRLAVVDAKLETKPGYVETFALG 106

The following BLAST results are available for this feature:

BLAST of Chy7G135360 vs.


Match Name	E-value	Identity	Description

BLAST of Chy7G135360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3B6	2.0e-50	96.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G385280 PE=4 SV=1	[more]
A0A5A7VAF7	7.7e-47	90.09	Putative ribosomal-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S4DV46	7.7e-47	90.09	uncharacterized protein LOC103487537 OS=Cucumis melo OX=3656 GN=LOC103487537 PE=...	[more]
A0A6J1J075	4.7e-36	73.68	uncharacterized protein LOC111480022 OS=Cucurbita maxima OX=3661 GN=LOC111480022...	[more]
A0A6J1GTX5	6.2e-36	73.04	uncharacterized protein LOC111457504 OS=Cucurbita moschata OX=3662 GN=LOC1114575...	[more]

BLAST of Chy7G135360 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649640.1	6.36e-82	96.15	hypothetical protein Csa_012725 [Cucumis sativus]	[more]
XP_011653828.1	5.02e-67	96.40	uncharacterized protein LOC101209567 [Cucumis sativus]	[more]
XP_016899843.1	2.65e-62	90.09	PREDICTED: uncharacterized protein LOC103487537 [Cucumis melo] >KAA0064210.1 put...	[more]
XP_038893730.1	3.87e-51	77.19	uncharacterized protein LOC120082569 [Benincasa hispida]	[more]
XP_022980748.1	4.25e-48	73.68	uncharacterized protein LOC111480022 [Cucurbita maxima]	[more]

BLAST of Chy7G135360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16790.1	1.3e-22	53.77	ribosomal protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy7G135360.1	Chy7G135360.1	mRNA