Chy7G134370 (gene) Cucumber (hystrix) v1

Overview


Name	Chy7G134370
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	nuclear pore complex protein NUP160
Location	chrH07: 5482443 .. 5482616 (+)
RNA-Seq Expression	Chy7G134370
Synteny	Chy7G134370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCACCAGCAGACATAATCAACCGAAAAAGACCATTCTCTGTTTGCTTTCCCTACAACGCCGTTCAGTACTTATGGTGCAAAATAGATGAATTGATCCTCTCAGGTCACATGGTAGATGCTTGTGAGAAGCTGAGAAATCTATTGTATGGCGCTTTGTTGAATCACCTGAAGCTG

mRNA sequence

GCACCAGCAGACATAATCAACCGAAAAAGACCATTCTCTGTTTGCTTTCCCTACAACGCCGTTCAGTACTTATGGTGCAAAATAGATGAATTGATCCTCTCAGGTCACATGGTAGATGCTTGTGAGAAGCTGAGAAATCTATTGTATGGCGCTTTGTTGAATCACCTGAAGCTG

Coding sequence (CDS)

GCACCAGCAGACATAATCAACCGAAAAAGACCATTCTCTGTTTGCTTTCCCTACAACGCCGTTCAGTACTTATGGTGCAAAATAGATGAATTGATCCTCTCAGGTCACATGGTAGATGCTTGTGAGAAGCTGAGAAATCTATTGTATGGCGCTTTGTTGAATCACCTGAAGCTG

Protein sequence

APADIINRKRPFSVCFPYNAVQYLWCKIDELILSGHMVDACEKLRNLLYGALLNHLKL

Homology

[Close]

BLAST of Chy7G134370 vs. ExPASy Swiss-Prot
Match: Q9C811 (Nuclear pore complex protein NUP160 OS=Arabidopsis thaliana OX=3702 GN=NUP160 PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-09
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 2    PADIINRKRPFSVCFPYNAVQYLWCKIDELILSGHMVDACEKLRNLLYGALLNHLKL 59
            PA+++ RK+   V FPY  V+ LW ++++ + SG MV+ C KL+  L+ ALLNHLKL
Sbjct: 1425 PAEVLKRKKVSGVWFPYTTVERLWWELEKTMNSGRMVEQCHKLKEQLHHALLNHLKL 1481

[Close]

BLAST of Chy7G134370 vs. ExPASy TrEMBL
Match: A0A0A0LKG2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G149480 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-24
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1   APADIINRKRPFSVCFPYNAVQYLWCKIDELILSGHMVDACEKLRNLLYGALLNHLKL 59
           APAD+INRKRPFS+CFPYNAVQYLWCKIDELI SGHMVDACEKLRNLL+GALLNHLKL
Sbjct: 60  APADLINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDACEKLRNLLHGALLNHLKL 117

[Close]

BLAST of Chy7G134370 vs. ExPASy TrEMBL
Match: A0A5D3B9M7 (Nuclear pore complex protein NUP160 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00860 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.8e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 2   PADIINRKRPFSVCFPYNAVQYLWCKIDELILSGHMVDACEKLRNLLYGALLNHLKL 59
           PADIINRKRPFSVCFPYNAVQYLWCKIDELI SGHMVDACEKLRNLL+GALLNH+KL
Sbjct: 119 PADIINRKRPFSVCFPYNAVQYLWCKIDELIRSGHMVDACEKLRNLLHGALLNHMKL 175

[Close]

BLAST of Chy7G134370 vs. ExPASy TrEMBL
Match: A0A1S3C516 (nuclear pore complex protein NUP160 isoform X5 OS=Cucumis melo OX=3656 GN=LOC103496931 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.8e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 2    PADIINRKRPFSVCFPYNAVQYLWCKIDELILSGHMVDACEKLRNLLYGALLNHLKL 59
            PADIINRKRPFSVCFPYNAVQYLWCKIDELI SGHMVDACEKLRNLL+GALLNH+KL
Sbjct: 1429 PADIINRKRPFSVCFPYNAVQYLWCKIDELIRSGHMVDACEKLRNLLHGALLNHMKL 1485

[Close]

BLAST of Chy7G134370 vs. ExPASy TrEMBL
Match: A0A1S3C4Y2 (nuclear pore complex protein NUP160 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496931 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.8e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 2    PADIINRKRPFSVCFPYNAVQYLWCKIDELILSGHMVDACEKLRNLLYGALLNHLKL 59
            PADIINRKRPFSVCFPYNAVQYLWCKIDELI SGHMVDACEKLRNLL+GALLNH+KL
Sbjct: 1444 PADIINRKRPFSVCFPYNAVQYLWCKIDELIRSGHMVDACEKLRNLLHGALLNHMKL 1500

[Close]

BLAST of Chy7G134370 vs. ExPASy TrEMBL
Match: A0A1S3C685 (nuclear pore complex protein NUP160 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103496931 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.8e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 2    PADIINRKRPFSVCFPYNAVQYLWCKIDELILSGHMVDACEKLRNLLYGALLNHLKL 59
            PADIINRKRPFSVCFPYNAVQYLWCKIDELI SGHMVDACEKLRNLL+GALLNH+KL
Sbjct: 1434 PADIINRKRPFSVCFPYNAVQYLWCKIDELIRSGHMVDACEKLRNLLHGALLNHMKL 1490

[Close]

BLAST of Chy7G134370 vs. NCBI nr
Match: TYJ95576.1 (nuclear pore complex protein NUP160 isoform X4 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 2.35e-32
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 2   PADIINRKRPFSVCFPYNAVQYLWCKIDELILSGHMVDACEKLRNLLYGALLNHLKL 58
           PADIINRKRPFSVCFPYNAVQYLWCKIDELI SGHMVDACEKLRNLL+GALLNH+KL
Sbjct: 119 PADIINRKRPFSVCFPYNAVQYLWCKIDELIRSGHMVDACEKLRNLLHGALLNHMKL 175

[Close]

BLAST of Chy7G134370 vs. NCBI nr
Match: XP_011649109.1 (nuclear pore complex protein NUP160 isoform X3 [Cucumis sativus])

HSP 1 Score: 120 bits (302), Expect = 5.29e-30
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1    APADIINRKRPFSVCFPYNAVQYLWCKIDELILSGHMVDACEKLRNLLYGALLNHLKL 58
            APAD+INRKRPFS+CFPYNAVQYLWCKIDELI SGHMVDACEKLRNLL+GALLNHLKL
Sbjct: 1426 APADLINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDACEKLRNLLHGALLNHLKL 1483

[Close]

BLAST of Chy7G134370 vs. NCBI nr
Match: XP_011649107.1 (nuclear pore complex protein NUP160 isoform X2 [Cucumis sativus])

HSP 1 Score: 120 bits (302), Expect = 5.29e-30
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1    APADIINRKRPFSVCFPYNAVQYLWCKIDELILSGHMVDACEKLRNLLYGALLNHLKL 58
            APAD+INRKRPFS+CFPYNAVQYLWCKIDELI SGHMVDACEKLRNLL+GALLNHLKL
Sbjct: 1441 APADLINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDACEKLRNLLHGALLNHLKL 1498

[Close]

BLAST of Chy7G134370 vs. NCBI nr
Match: XP_011649106.1 (nuclear pore complex protein NUP160 isoform X1 [Cucumis sativus] >KAE8651777.1 hypothetical protein Csa_005983 [Cucumis sativus])

HSP 1 Score: 120 bits (302), Expect = 5.29e-30
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1    APADIINRKRPFSVCFPYNAVQYLWCKIDELILSGHMVDACEKLRNLLYGALLNHLKL 58
            APAD+INRKRPFS+CFPYNAVQYLWCKIDELI SGHMVDACEKLRNLL+GALLNHLKL
Sbjct: 1442 APADLINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDACEKLRNLLHGALLNHLKL 1499

[Close]

BLAST of Chy7G134370 vs. NCBI nr
Match: XP_038907018.1 (nuclear pore complex protein NUP160 isoform X3 [Benincasa hispida])

HSP 1 Score: 119 bits (299), Expect = 1.34e-29
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 2    PADIINRKRPFSVCFPYNAVQYLWCKIDELILSGHMVDACEKLRNLLYGALLNHLKL 58
            PAD+INRKRPFSVCFPYNAVQYLWCKIDELI SGHMVDACEKLRNLL+GALLNHLKL
Sbjct: 1424 PADLINRKRPFSVCFPYNAVQYLWCKIDELIRSGHMVDACEKLRNLLHGALLNHLKL 1480

[Close]

BLAST of Chy7G134370 vs. TAIR 10
Match: AT1G33410.1 (SUPPRESSOR OF AUXIN RESISTANCE1 )

HSP 1 Score: 63.2 bits (152), Expect = 8.2e-11
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 2    PADIINRKRPFSVCFPYNAVQYLWCKIDELILSGHMVDACEKLRNLLYGALLNHLKL 59
            PA+++ RK+   V FPY  V+ LW ++++ + SG MV+ C KL+  L+ ALLNHLKL
Sbjct: 1434 PAEVLKRKKVSGVWFPYTTVERLWWELEKTMNSGRMVEQCHKLKEQLHHALLNHLKL 1490

[Close]

BLAST of Chy7G134370 vs. TAIR 10
Match: AT1G33410.2 (SUPPRESSOR OF AUXIN RESISTANCE1 )

HSP 1 Score: 63.2 bits (152), Expect = 8.2e-11
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 2    PADIINRKRPFSVCFPYNAVQYLWCKIDELILSGHMVDACEKLRNLLYGALLNHLKL 59
            PA+++ RK+   V FPY  V+ LW ++++ + SG MV+ C KL+  L+ ALLNHLKL
Sbjct: 1434 PAEVLKRKKVSGVWFPYTTVERLWWELEKTMNSGRMVEQCHKLKEQLHHALLNHLKL 1490

The following BLAST results are available for this feature:

BLAST of Chy7G134370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C811	1.1e-09	47.37	Nuclear pore complex protein NUP160 OS=Arabidopsis thaliana OX=3702 GN=NUP160 PE...	[more]

BLAST of Chy7G134370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKG2	1.7e-24	93.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G149480 PE=4 SV=1	[more]
A0A5D3B9M7	3.8e-24	94.74	Nuclear pore complex protein NUP160 isoform X4 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3C516	3.8e-24	94.74	nuclear pore complex protein NUP160 isoform X5 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A1S3C4Y2	3.8e-24	94.74	nuclear pore complex protein NUP160 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A1S3C685	3.8e-24	94.74	nuclear pore complex protein NUP160 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of Chy7G134370 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ95576.1	2.35e-32	94.74	nuclear pore complex protein NUP160 isoform X4 [Cucumis melo var. makuwa]	[more]
XP_011649109.1	5.29e-30	93.10	nuclear pore complex protein NUP160 isoform X3 [Cucumis sativus]	[more]
XP_011649107.1	5.29e-30	93.10	nuclear pore complex protein NUP160 isoform X2 [Cucumis sativus]	[more]
XP_011649106.1	5.29e-30	93.10	nuclear pore complex protein NUP160 isoform X1 [Cucumis sativus] >KAE8651777.1 h...	[more]
XP_038907018.1	1.34e-29	94.74	nuclear pore complex protein NUP160 isoform X3 [Benincasa hispida]	[more]

BLAST of Chy7G134370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33410.1	8.2e-11	47.37	SUPPRESSOR OF AUXIN RESISTANCE1	[more]
AT1G33410.2	8.2e-11	47.37	SUPPRESSOR OF AUXIN RESISTANCE1	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy7G134370.1	Chy7G134370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033036	macromolecule localization
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0071705	nitrogen compound transport
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0071702	organic substance transport
cellular_component	GO:0005643	nuclear pore