Chy7G134170 (gene) Cucumber (hystrix) v1

Overview


Name	Chy7G134170
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chrH07: 5220409 .. 5221592 (+)
RNA-Seq Expression	Chy7G134170
Synteny	Chy7G134170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAACATCAATACTACCTCCATCCTTGGTGAAGAAACATCCAGAGACTCATCCTCCACGATTTTCGGTTCAGGTTCTAAAATCTCTCTTGTAAAACTTGAAGATGATAATTTCTTGCTGTGGAAATTTCAAATTATCATAGCACTTGAAGCATATGACCTTGAGTCATTTATCGAATCAACAACTGAACCTCCAACAAAGTACATCATCTCACCAGTAAATCCAACACCCACGGCGACTGGAAGTTCCTCAACTGCCACGACATAGATGCTGAATCCAGAATACAAAATTTGGAAGAGACAAGATAGGCTGATCTCCTCATGGTTACTGGGTTCAATGACTGAAGATATTCAAAATCAAATGTTTCACTGCATCTCTGCGAAACAAATATGGGAAACATTACAAGGTATCTATTCCTCTCGCTACCTAGCACATGCTATGCAATTTAAAAATAAACTTCATAATATGAAAAAGGGAGCTATGCCATTAAAAGAATATTTCCTTAAAATCCAGCAATGTGTTGATGCCTTAGCTTCCATCAACAAACCTATTTCGACTGATGATCACATACTGTATATAATTCCTTGTTTAGGATCAGAATATCAATCTATGATATCAGTATCTCTGTCCGAACTGACTCTCCATCTGTTCAAGATATTATGTCTTTATTGCTTACTCAAGAATCACAGGTTGAAAGTAAAATTAATAATGAAGTTTCTCTACCAGCTGTAAATGTCACTACTGAATCACTAGAAAAGGAAGGAGAAGGTCTCAACTGAGGAAATCAAAATAATCCACAATTTACATATAATAACTCTCAATATAATCAAAGGAATCGTGGTGGAGGCAGATCAAACAGAGGAGGAAGAGGAAACAGAAACAAGCCACAGTGTCAAATTTGTACAAAATTTGGTCACAGTGCGGATCGATGCTACTTCCAATATGCCTCGAGAAATAACTCAGGTTTCTCTCCAAACTCATCTACATCATCTTATACTAATAATTTTCAGAATCCACAGATGGCTGCCATGGTTGCTGCTCCTGATCTGAATGTTGACAGTAATTGGTATCCTGACTCTGGAGCCACGAATCATTTGACACATAGTTTGAGCAACCTATCTACTGGAACTAAGTATAATGGAGGTATGTGTTTGAGCAACCTATCTACTGGAACTAAGTAG

mRNA sequence

ATGAGTAACATCAATACTACCTCCATCCTTGGTGAAGAAACATCCAGAGACTCATCCTCCACGATTTTCGGTTCAGGTTCTAAAATCTCTCTTGTAAAACTTGAAGATGATAATTTCTTGCTGTGGAAATTTCAAATTATCATAGCACTTGAAGCATATGACCTTGAGTCATTTATCGAATCAACAACTGAACCTCCAACAAAGATCAGAATATCAATCTATGATATCAGTATCTCTGTCCGAACTGACTCTCCATCTGTTCAAGATATTATGTCTTTATTGCTTACTCAAGAATCACAGAATCCACAGATGGCTGCCATGGTTGCTGCTCCTGATCTGAATGTTGACAGTAATTGGTATCCTGACTCTGGAGCCACGAATCATTTGACACATAGTTTGAGCAACCTATCTACTGGAACTAAGTATAATGGAGGTATGTGTTTGAGCAACCTATCTACTGGAACTAAGTAG

Coding sequence (CDS)

ATGAGTAACATCAATACTACCTCCATCCTTGGTGAAGAAACATCCAGAGACTCATCCTCCACGATTTTCGGTTCAGGTTCTAAAATCTCTCTTGTAAAACTTGAAGATGATAATTTCTTGCTGTGGAAATTTCAAATTATCATAGCACTTGAAGCATATGACCTTGAGTCATTTATCGAATCAACAACTGAACCTCCAACAAAGATCAGAATATCAATCTATGATATCAGTATCTCTGTCCGAACTGACTCTCCATCTGTTCAAGATATTATGTCTTTATTGCTTACTCAAGAATCACAGAATCCACAGATGGCTGCCATGGTTGCTGCTCCTGATCTGAATGTTGACAGTAATTGGTATCCTGACTCTGGAGCCACGAATCATTTGACACATAGTTTGAGCAACCTATCTACTGGAACTAAGTATAATGGAGGTATGTGTTTGAGCAACCTATCTACTGGAACTAAGTAG

Protein sequence

MSNINTTSILGEETSRDSSSTIFGSGSKISLVKLEDDNFLLWKFQIIIALEAYDLESFIESTTEPPTKIRISIYDISISVRTDSPSVQDIMSLLLTQESQNPQMAAMVAAPDLNVDSNWYPDSGATNHLTHSLSNLSTGTKYNGGMCLSNLSTGTK*

Homology

[Close]

BLAST of Chy7G134170 vs. ExPASy TrEMBL
Match: A0A5A7T077 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00410 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 6.9e-36
Identity = 103/189 (54.50%), Postives = 119/189 (62.96%), Query Frame = 0


Query: 1   MSNINTTSILGEETSRDSS--STIFGSGSKISLVKLEDDNFLLWKFQIIIALEAYDLESF 60
           MSN + +SILGE+ S+D S  S IFGS SKISLVKL DDN + WKFQI+ ALEAYDLES+
Sbjct: 1   MSNNSDSSILGEDVSKDPSSISQIFGSRSKISLVKLGDDN-ISWKFQILTALEAYDLESY 60

Query: 61  IESTTEPPTK------------------------IRISIYDISISVRTDSPSVQDIMSLL 120
           +ES  +PPTK                               + IS RTDSPSVQDIMSLL
Sbjct: 61  LESIVKPPTKYINKPPKPNIDYNWKLFCPYPGLGTEYQPMILVISARTDSPSVQDIMSLL 120

Query: 121 LTQESQ------------------NPQMAAMVAAPDLNVDSNWYPDSGATNHLTHSLSNL 146
           LTQESQ                  NPQM+AMVA+ DLNVDSNWYP+ GATNHL H+LSNL
Sbjct: 121 LTQESQIESYSANSSNFRYINASHNPQMSAMVASYDLNVDSNWYPNLGATNHLIHNLSNL 180

[Close]

BLAST of Chy7G134170 vs. ExPASy TrEMBL
Match: A0A5D3B9Z0 (Putative copia-like retrotransposon Hopscotch polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001150 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.9e-31
Identity = 101/219 (46.12%), Postives = 118/219 (53.88%), Query Frame = 0


Query: 1   MSNINTTSILGEETSRDSS--STIFGSGSKISLVKLEDDNFLLWKFQIIIALEAYDLESF 60
           MSN + +SILGE+ S+D S  S IFGSGSKISLVKL DDN + WKFQI+ ALEAYDLES+
Sbjct: 1   MSNNSDSSILGEDVSKDPSSISQIFGSGSKISLVKLGDDN-ISWKFQILTALEAYDLESY 60

Query: 61  IESTTEPPTK--------------------------------------------IRISIY 120
           +ES  +PPTK                                                  
Sbjct: 61  LESIVKPPTKYINTPPKPNIDYNWKLFCPYHILNQMLHCTSAKQIWKTLQARLGTEYQPM 120

Query: 121 DISISVRTDSPSVQDIMSLLLTQESQ----------------------------NPQMAA 146
            + IS RTDSPSVQDIMSLLLTQESQ                              +M+A
Sbjct: 121 ILVISARTDSPSVQDIMSLLLTQESQIESKITSDVSLPTVNVTKQNRDIQSLEKECEMSA 180

[Close]

BLAST of Chy7G134170 vs. ExPASy TrEMBL
Match: A0A5D3D3G2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00260 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 4.6e-24
Identity = 85/205 (41.46%), Postives = 105/205 (51.22%), Query Frame = 0


Query: 5   NTTSILGEETSRDSS--STIFGSGSKISLVKLEDDNFLLWKFQIIIALEAYDLESFIEST 64
           +T+S+LG E +  SS  + IFGSG+KISLVKL DDNFLLWKFQI+ ALEAYD+E+F+ES 
Sbjct: 3   STSSLLGVENTEASSPINQIFGSGNKISLVKLNDDNFLLWKFQILTALEAYDMENFLESE 62

Query: 65  TEPPTKIRISIYDISIS-VRTDSPSVQDIMSLLLTQESQN-PQMAAMVAAPDLNV----- 124
           +EPPTK   S    S S  RT +P           +ESQN  ++ +  A P +N+     
Sbjct: 63  SEPPTKYLTSTGSSSTSATRTPNPEY---------KESQNESKLISETALPSVNIVTQTT 122

Query: 125 -------------------------------------------------------DSNWY 146
                                                                  DSNWY
Sbjct: 123 EKGAESYIRTSQNNYHNNHSYNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSADSNWY 182

[Close]

BLAST of Chy7G134170 vs. ExPASy TrEMBL
Match: A0A1S3CQ70 (uncharacterized protein LOC103502987 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502987 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-16
Identity = 65/186 (34.95%), Postives = 92/186 (49.46%), Query Frame = 0


Query: 13  ETSRDSSSTI---FGSGSKISLVKLEDDNFLLWKFQIIIALEAYDLESFIESTTEPPTKI 72
           E  +D+SS I   F S +KIS+V+L DDNFLLW+FQ++ ALE YDLE +++S+ EPP++ 
Sbjct: 11  EEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQF 70

Query: 73  RISIYDISISVRTDSPSV---------------------------------QDIMSLLLT 132
                  ++ V T  P +                                 +DI++ +L 
Sbjct: 71  ------FNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNEDILNQMLN 130

Query: 133 QES------------------QNPQMAAMVAAPDLNVDSNWYPDSGATNHLTHSLSNLST 145
             S                  Q  Q+  MVA+ DLN+DSNWYPDS  TNHLT++ +N   
Sbjct: 131 CNSTKDIWANLHGIYFARCLAQAMQLKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFI 190

[Close]

BLAST of Chy7G134170 vs. ExPASy TrEMBL
Match: A0A1S3CQ60 (uncharacterized protein LOC103502987 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502987 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-16
Identity = 65/186 (34.95%), Postives = 92/186 (49.46%), Query Frame = 0


Query: 13  ETSRDSSSTI---FGSGSKISLVKLEDDNFLLWKFQIIIALEAYDLESFIESTTEPPTKI 72
           E  +D+SS I   F S +KIS+V+L DDNFLLW+FQ++ ALE YDLE +++S+ EPP++ 
Sbjct: 11  EEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQF 70

Query: 73  RISIYDISISVRTDSPSV---------------------------------QDIMSLLLT 132
                  ++ V T  P +                                 +DI++ +L 
Sbjct: 71  ------FNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNEDILNQMLN 130

Query: 133 QES------------------QNPQMAAMVAAPDLNVDSNWYPDSGATNHLTHSLSNLST 145
             S                  Q  Q+  MVA+ DLN+DSNWYPDS  TNHLT++ +N   
Sbjct: 131 CNSTKDIWANLHGIYFARCLAQAMQLKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFI 190

[Close]

BLAST of Chy7G134170 vs. NCBI nr
Match: KAA0036760.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (405), Expect = 4.16e-44
Identity = 103/189 (54.50%), Postives = 119/189 (62.96%), Query Frame = 0


Query: 1   MSNINTTSILGEETSRDSSST--IFGSGSKISLVKLEDDNFLLWKFQIIIALEAYDLESF 60
           MSN + +SILGE+ S+D SS   IFGS SKISLVKL DDN + WKFQI+ ALEAYDLES+
Sbjct: 1   MSNNSDSSILGEDVSKDPSSISQIFGSRSKISLVKLGDDN-ISWKFQILTALEAYDLESY 60

Query: 61  IESTTEPPTKI------------------------RISIYDISISVRTDSPSVQDIMSLL 120
           +ES  +PPTK                               + IS RTDSPSVQDIMSLL
Sbjct: 61  LESIVKPPTKYINKPPKPNIDYNWKLFCPYPGLGTEYQPMILVISARTDSPSVQDIMSLL 120

Query: 121 LTQESQ------------------NPQMAAMVAAPDLNVDSNWYPDSGATNHLTHSLSNL 145
           LTQESQ                  NPQM+AMVA+ DLNVDSNWYP+ GATNHL H+LSNL
Sbjct: 121 LTQESQIESYSANSSNFRYINASHNPQMSAMVASYDLNVDSNWYPNLGATNHLIHNLSNL 180

[Close]

BLAST of Chy7G134170 vs. NCBI nr
Match: TYJ95829.1 (putative copia-like retrotransposon Hopscotch polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (364), Expect = 2.28e-39
Identity = 102/219 (46.58%), Postives = 121/219 (55.25%), Query Frame = 0


Query: 1   MSNINTTSILGEETSRDSSST--IFGSGSKISLVKLEDDNFLLWKFQIIIALEAYDLESF 60
           MSN + +SILGE+ S+D SS   IFGSGSKISLVKL DDN + WKFQI+ ALEAYDLES+
Sbjct: 1   MSNNSDSSILGEDVSKDPSSISQIFGSGSKISLVKLGDDN-ISWKFQILTALEAYDLESY 60

Query: 61  IESTTEPPTK----------------------IRISIYDIS------------------- 120
           +ES  +PPTK                      +   ++  S                   
Sbjct: 61  LESIVKPPTKYINTPPKPNIDYNWKLFCPYHILNQMLHCTSAKQIWKTLQARLGTEYQPM 120

Query: 121 ---ISVRTDSPSVQDIMSLLLTQESQ----------------------------NPQMAA 145
              IS RTDSPSVQDIMSLLLTQESQ                              +M+A
Sbjct: 121 ILVISARTDSPSVQDIMSLLLTQESQIESKITSDVSLPTVNVTKQNRDIQSLEKECEMSA 180

[Close]

BLAST of Chy7G134170 vs. NCBI nr
Match: KAA0068024.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK18104.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (302), Expect = 1.56e-29
Identity = 85/204 (41.67%), Postives = 104/204 (50.98%), Query Frame = 0


Query: 6   TTSILGEETSRDSS--STIFGSGSKISLVKLEDDNFLLWKFQIIIALEAYDLESFIESTT 65
           T+S+LG E +  SS  + IFGSG+KISLVKL DDNFLLWKFQI+ ALEAYD+E+F+ES +
Sbjct: 4   TSSLLGVENTEASSPINQIFGSGNKISLVKLNDDNFLLWKFQILTALEAYDMENFLESES 63

Query: 66  EPPTKIRISIYDISISV-RTDSPSVQDIMSLLLTQESQNP-QMAAMVAAPDLNV------ 125
           EPPTK   S    S S  RT +P  +         ESQN  ++ +  A P +N+      
Sbjct: 64  EPPTKYLTSTGSSSTSATRTPNPEYK---------ESQNESKLISETALPSVNIVTQTTE 123

Query: 126 ------------------------------------------------------DSNWYP 145
                                                                 DSNWYP
Sbjct: 124 KGAESYIRTSQNNYHNNHSYNQRGGRGNGRSNSGGRGNRNKPQCQICTKLGHSADSNWYP 183

[Close]

BLAST of Chy7G134170 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (256), Expect = 4.08e-22
Identity = 105/371 (28.30%), Postives = 121/371 (32.61%), Query Frame = 0


Query: 6   TTSILGEETSRDSS--STIFGSGSKISLVKLEDDNFLLWKFQIIIALEAYDLESFIESTT 65
           T+S+LG E +  SS  + IFGSG+KISLVKL DD FLLWKFQI+ ALEAYDLE+F+ES +
Sbjct: 4   TSSLLGVENTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESES 63

Query: 66  EPPTKIRISIYDIS---------------------------------------------- 125
           EPP+K  IS    S                                              
Sbjct: 64  EPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEI 123

Query: 126 ------------------------------------------------------------ 145
                                                                       
Sbjct: 124 WETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHI 183

[Close]

BLAST of Chy7G134170 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (256), Expect = 4.08e-22
Identity = 105/371 (28.30%), Postives = 121/371 (32.61%), Query Frame = 0


Query: 6   TTSILGEETSRDSS--STIFGSGSKISLVKLEDDNFLLWKFQIIIALEAYDLESFIESTT 65
           T+S+LG E +  SS  + IFGSG+KISLVKL DD FLLWKFQI+ ALEAYDLE+F+ES +
Sbjct: 4   TSSLLGVENTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESES 63

Query: 66  EPPTKIRISIYDIS---------------------------------------------- 125
           EPP+K  IS    S                                              
Sbjct: 64  EPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEI 123

Query: 126 ------------------------------------------------------------ 145
                                                                       
Sbjct: 124 WETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHI 183

The following BLAST results are available for this feature:

BLAST of Chy7G134170 vs.


Match Name	E-value	Identity	Description

BLAST of Chy7G134170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T077	6.9e-36	54.50	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3B9Z0	3.9e-31	46.12	Putative copia-like retrotransposon Hopscotch polyprotein OS=Cucumis melo var. m...	[more]
A0A5D3D3G2	4.6e-24	41.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A1S3CQ70	1.2e-16	34.95	uncharacterized protein LOC103502987 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3CQ60	1.2e-16	34.95	uncharacterized protein LOC103502987 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Chy7G134170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036760.1	4.16e-44	54.50	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
TYJ95829.1	2.28e-39	46.58	putative copia-like retrotransposon Hopscotch polyprotein [Cucumis melo var. mak...	[more]
KAA0068024.1	1.56e-29	41.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0048297.1	4.08e-22	28.30	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK10642.1	4.08e-22	28.30	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Chy7G134170 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy7G134170.1	Chy7G134170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding