Chy7G132860 (gene) Cucumber (hystrix) v1

Overview
NameChy7G132860
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionBED-type domain-containing protein
LocationchrH07: 3626287 .. 3626765 (+)
RNA-Seq ExpressionChy7G132860
SyntenyChy7G132860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAATGTCGATTTCATGTACTTTTTATTTTGTTATATTTTGGAATTTGGATACATTTCCACGTATTTTGAAATTTTGAAAATGTAAATTTGGGAACTAAGGAATTAAAGAAAATAGATAAAGAAAGAAAAAAGAAAATGGTGGTGCCCTAACCTCCGTCATCTTCATCATCTTCAGGCCGGCGTCTATACAACAAACCCACTAGCAGCAGCGTAGACCACGAACTCACCGACGAACAGTTCTCGCGTATCAGACGATTCAGACCGACCTGCGTTTGCTCCACGTTTGACGGTAGAGCTAGCCTGCGATGTGAACACCCAGTTTGAGAATATTGTGCATCGCGCTTTCGACGGCTGGGTGTCTGGAAACAGCGTTTTTGACCGGGGGTAAGCTTTTGGCCGTTACCCACACTTCGTTTGGCTCCAAATCAGTTTGTCCATAACGTTTTGTGTCCAGATCTACAAGTTCGGACGTTTTCAT

mRNA sequence

TTAATGAATTAAAGAAAATAGATAAAGAAAGAAAAAAGAAAATGGTGGTGCCCTAACCTCCGTCATCTTCATCATCTTCAGGCCGGCGTCTATACAACAAACCCACTAGCAGCAGCGTAGACCACGAACTCACCGACGAACAGTTCTCGCGTATCAGACGATTCAGACCGACCTGCGTTTGCTCCACGTTTGACGGTAGAGCTAGCCTGCGATGTGAACACCCAGTTTGAGAATATTGTGCATCGCGCTTTCGACGGCTGGGTGTCTGGAAACAGCGTTTTTGACCGGGGGTAAGCTTTTGGCCGTTACCCACACTTCGTTTGGCTCCAAATCAGTTTGTCCATAACGTTTTGTGTCCAGATCTACAAGTTCGGACGTTTTCAT

Coding sequence (CDS)

TTAATGAATTAAAGAAAATAGATAAAGAAAGAAAAAAGAAAATGGTGGTGCCCTAACCTCCGTCATCTTCATCATCTTCAGGCCGGCGTCTATACAACAAACCCACTAGCAGCAGCGTAGACCACGAACTCACCGACGAACAGTTCTCGCGTATCAGACGATTCAGACCGACCTGCGTTTGCTCCACGTTTGACGGTAGAGCTAGCCTGCGATGTGAACACCCAGTTTGAGAATATTGTGCATCGCGCTTTCGACGGCTGGGTGTCTGGAAACAGCGTTTTTGACCGGGGGTAAGCTTTTGGCCGTTACCCACACTTCGTTTGGCTCCAAATCAGTTTGTCCATAACGTTTTGTGTCCAGATCTACAAGTTCGGACGTTTTCAT

Protein sequence

LMN*RK*IKKEKRKWWCPNLRHLHHLQAGVYTTNPLAAA*TTNSPTNSSRVSDDSDRPAFAPRLTVELACDVNTQFENIVHRAFDGWVSGNSVFDRG*AFGRYPHFVWLQISLSITFCVQIYKFGRFH
Homology
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BLAST of Chy7G132860 vs. ExPASy TrEMBL
Match: A0A0A0L1Z7 (BED-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G624400 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.2e-47
Identity = 94/111 (84.68%), Postives = 96/111 (86.49%), Query Frame = 0 

Query: 18  PNLRHLHHLQAGVYTTNPLAAA*TTNSPTNSSRVSDDSDRPAFAPRLTVELACDVNTQFE 77
           PN   +  + AGVYTTN LAAA TTNSPTN SRVSDDSDRPAFAPRLT ELACDVNTQFE
Sbjct: 26  PNKSEIFKINAGVYTTNSLAAASTTNSPTNCSRVSDDSDRPAFAPRLTAELACDVNTQFE 85

Query: 78  NIVHRAFDGWVSGNSVFDRG*AFGRYPHFVWLQISLSITFCVQIYKFGRFH 129
            IVH AFDGWVSGNSVFDRG  FGRYPHFVWLQISLSITF VQIYKFGRFH
Sbjct: 86  KIVHHAFDGWVSGNSVFDRGYTFGRYPHFVWLQISLSITFSVQIYKFGRFH 136

The following BLAST results are available for this feature:
BLAST of Chy7G132860 vs.
Match NameE-valueIdentityDescription
BLAST of Chy7G132860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1Z73.2e-4784.68BED-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G624400 PE... [more]
BLAST of Chy7G132860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of Chy7G132860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy7G132860.1Chy7G132860.1mRNA