Chy7G132110 (gene) Cucumber (hystrix) v1

Overview
NameChy7G132110
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionMediator of RNA polymerase II transcription subunit 26
LocationchrH07: 3063796 .. 3064104 (+)
RNA-Seq ExpressionChy7G132110
SyntenyChy7G132110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAACAAGCAGAAGATAGAGATGGAGAGGGAGCAGCAGAGGCGAGAAGAATCCAAGAAGATAGAGCAAGAACCGCCGTACTATATTTCTCCGATGCAGCCATTGACGGAATGTGCTTACGGCGGAGGAATGTACGGCACCGACGATGAAGGAGATCTGGACAGCCTGCAGATCAAGAAAGTACCTGCGAGTACAACGCAGAGCGCCGATGGACCAGTTGTAGCGGAAATGAAGCTGAAGCATCCGCCTCCGCCGTCCTCAGGTGACAGAGACATCGATATCACCGGGCAATCGTATTTCCAGTAG

mRNA sequence

ATGGAAAACAAGCAGAAGATAGAGATGGAGAGGGAGCAGCAGAGGCGAGAAGAATCCAAGAAGATAGAGCAAGAACCGCCGTACTATATTTCTCCGATGCAGCCATTGACGGAATGTGCTTACGGCGGAGGAATGTACGGCACCGACGATGAAGGAGATCTGGACAGCCTGCAGATCAAGAAAGTACCTGCGAGTACAACGCAGAGCGCCGATGGACCAGTTGTAGCGGAAATGAAGCTGAAGCATCCGCCTCCGCCGTCCTCAGGTGACAGAGACATCGATATCACCGGGCAATCGTATTTCCAGTAG

Coding sequence (CDS)

ATGGAAAACAAGCAGAAGATAGAGATGGAGAGGGAGCAGCAGAGGCGAGAAGAATCCAAGAAGATAGAGCAAGAACCGCCGTACTATATTTCTCCGATGCAGCCATTGACGGAATGTGCTTACGGCGGAGGAATGTACGGCACCGACGATGAAGGAGATCTGGACAGCCTGCAGATCAAGAAAGTACCTGCGAGTACAACGCAGAGCGCCGATGGACCAGTTGTAGCGGAAATGAAGCTGAAGCATCCGCCTCCGCCGTCCTCAGGTGACAGAGACATCGATATCACCGGGCAATCGTATTTCCAGTAG

Protein sequence

MENKQKIEMEREQQRREESKKIEQEPPYYISPMQPLTECAYGGGMYGTDDEGDLDSLQIKKVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ*
Homology
BLAST of Chy7G132110 vs. ExPASy TrEMBL
Match: A0A0A0L393 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G658490 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.0e-47
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 0

Query: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISPMQPLTECAYGGGMYGTDDEGDLDSLQIK 60
           MENKQKIEMEREQQRREESKKIEQEPPYYIS MQPLTECAYGGGMYGTDD+GD DSLQIK
Sbjct: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQIK 60

Query: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 103
           KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ
Sbjct: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 102

BLAST of Chy7G132110 vs. ExPASy TrEMBL
Match: A0A1S3BV26 (uncharacterized protein LOC103493802 OS=Cucumis melo OX=3656 GN=LOC103493802 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.5e-42
Identity = 92/102 (90.20%), Postives = 97/102 (95.10%), Query Frame = 0

Query: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISPMQPLTECAYGGGMYGTDDEGDLDSLQIK 60
           MENKQ+IEMEREQQRRE+SKKIEQEPPYYISPMQPLTE AYGGGMYGT +EGD +SLQ+K
Sbjct: 1   MENKQRIEMEREQQRREQSKKIEQEPPYYISPMQPLTESAYGGGMYGT-EEGDQESLQMK 60

Query: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 103
           KVPAS TQSADGPV AEMKLKHPPPPSSGDRDIDITGQSYFQ
Sbjct: 61  KVPASQTQSADGPVEAEMKLKHPPPPSSGDRDIDITGQSYFQ 101

BLAST of Chy7G132110 vs. ExPASy TrEMBL
Match: A0A6J1IJZ9 (uncharacterized protein LOC111476971 OS=Cucurbita maxima OX=3661 GN=LOC111476971 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.7e-33
Identity = 80/102 (78.43%), Postives = 86/102 (84.31%), Query Frame = 0

Query: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISPMQPLTECAYGGGMYGTDDEGDLDSLQIK 60
           ME  QK+EMEREQQRREE+KK+EQEPP+YISPMQPLTE AYGGGMYG  +EG   SLQ  
Sbjct: 1   METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGA-EEGQQQSLQ-- 60

Query: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 103
           K PAS TQSADGPV + MK KH PPPSSGDRDIDITGQSYFQ
Sbjct: 61  KKPASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 99

BLAST of Chy7G132110 vs. ExPASy TrEMBL
Match: A0A6J1FEB2 (uncharacterized protein LOC111443294 OS=Cucurbita moschata OX=3662 GN=LOC111443294 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.7e-33
Identity = 80/102 (78.43%), Postives = 86/102 (84.31%), Query Frame = 0

Query: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISPMQPLTECAYGGGMYGTDDEGDLDSLQIK 60
           ME  QK+EMEREQQRREE+KK+EQEPP+YISPMQPLTE AYGGGMYG  +EG   SLQ  
Sbjct: 1   METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGA-EEGQQQSLQ-- 60

Query: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 103
           K PAS TQSADGPV + MK KH PPPSSGDRDIDITGQSYFQ
Sbjct: 61  KKPASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 99

BLAST of Chy7G132110 vs. ExPASy TrEMBL
Match: A0A6J1BT98 (uncharacterized protein LOC111005558 OS=Momordica charantia OX=3673 GN=LOC111005558 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.3e-30
Identity = 78/102 (76.47%), Postives = 83/102 (81.37%), Query Frame = 0

Query: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISPMQPLTECAYGGGMYGTDDEGDLDSLQIK 60
           ME  QKIEMERE+QRREE+KK+EQ+PP  ISPMQPLTE AYGGGMYG  +EG    L  K
Sbjct: 1   MERNQKIEMEREEQRREETKKMEQQPPQNISPMQPLTESAYGGGMYGA-EEGQQQLL--K 60

Query: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 103
           K PAS TQSADGPV A MK KH PPPSSGDRDIDITGQSYFQ
Sbjct: 61  KKPASDTQSADGPVEAGMKPKHAPPPSSGDRDIDITGQSYFQ 99

BLAST of Chy7G132110 vs. NCBI nr
Match: XP_011654420.1 (uncharacterized protein LOC105435391 [Cucumis sativus])

HSP 1 Score: 198 bits (504), Expect = 7.07e-64
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 0

Query: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISPMQPLTECAYGGGMYGTDDEGDLDSLQIK 60
           MENKQKIEMEREQQRREESKKIEQEPPYYIS MQPLTECAYGGGMYGTDD+GD DSLQIK
Sbjct: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQIK 60

Query: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 102
           KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ
Sbjct: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 102

BLAST of Chy7G132110 vs. NCBI nr
Match: XP_008452943.1 (PREDICTED: uncharacterized protein LOC103493802 [Cucumis melo])

HSP 1 Score: 181 bits (460), Expect = 3.53e-57
Identity = 92/102 (90.20%), Postives = 97/102 (95.10%), Query Frame = 0

Query: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISPMQPLTECAYGGGMYGTDDEGDLDSLQIK 60
           MENKQ+IEMEREQQRRE+SKKIEQEPPYYISPMQPLTE AYGGGMYGT+ EGD +SLQ+K
Sbjct: 1   MENKQRIEMEREQQRREQSKKIEQEPPYYISPMQPLTESAYGGGMYGTE-EGDQESLQMK 60

Query: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 102
           KVPAS TQSADGPV AEMKLKHPPPPSSGDRDIDITGQSYFQ
Sbjct: 61  KVPASQTQSADGPVEAEMKLKHPPPPSSGDRDIDITGQSYFQ 101

BLAST of Chy7G132110 vs. NCBI nr
Match: KAG6591229.1 (hypothetical protein SDJN03_13575, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024115.1 hypothetical protein SDJN02_12928, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152 bits (385), Expect = 9.09e-46
Identity = 81/102 (79.41%), Postives = 87/102 (85.29%), Query Frame = 0

Query: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISPMQPLTECAYGGGMYGTDDEGDLDSLQIK 60
           ME  QK+EMEREQQRREE+KK+EQEPP+YISPMQPLTE AYGGGMYGT+ EG   SLQ K
Sbjct: 1   METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGTE-EGQQQSLQKK 60

Query: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 102
             PAS TQSADGPV + MK KH PPPSSGDRDIDITGQSYFQ
Sbjct: 61  --PASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 99

BLAST of Chy7G132110 vs. NCBI nr
Match: XP_022936823.1 (uncharacterized protein LOC111443294 [Cucurbita moschata] >XP_022976625.1 uncharacterized protein LOC111476971 [Cucurbita maxima] >XP_023535795.1 uncharacterized protein LOC111797123 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 150 bits (380), Expect = 5.26e-45
Identity = 80/102 (78.43%), Postives = 86/102 (84.31%), Query Frame = 0

Query: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISPMQPLTECAYGGGMYGTDDEGDLDSLQIK 60
           ME  QK+EMEREQQRREE+KK+EQEPP+YISPMQPLTE AYGGGMYG + EG   SLQ K
Sbjct: 1   METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAE-EGQQQSLQKK 60

Query: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 102
             PAS TQSADGPV + MK KH PPPSSGDRDIDITGQSYFQ
Sbjct: 61  --PASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 99

BLAST of Chy7G132110 vs. NCBI nr
Match: XP_038899828.1 (uncharacterized protein LOC120087055 [Benincasa hispida])

HSP 1 Score: 149 bits (377), Expect = 1.51e-44
Identity = 80/102 (78.43%), Postives = 88/102 (86.27%), Query Frame = 0

Query: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISPMQPLTECAYGGGMYGTDDEGDLDSLQIK 60
           ME+ QK+EMEREQQRREESKK+EQ+PP+YISPM+PLTE AYGGGMYG  +EG+  SLQ K
Sbjct: 1   MESNQKMEMEREQQRREESKKMEQQPPHYISPMKPLTESAYGGGMYG-GEEGEERSLQKK 60

Query: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 102
             PAS TQSADGPV  EMK KH PPPSSGDRDIDITGQSYFQ
Sbjct: 61  --PASETQSADGPVEREMKPKHAPPPSSGDRDIDITGQSYFQ 99

BLAST of Chy7G132110 vs. TAIR 10
Match: AT5G42290.1 (transcription activator-related )

HSP 1 Score: 87.8 bits (216), Expect = 5.5e-18
Identity = 54/110 (49.09%), Postives = 67/110 (60.91%), Query Frame = 0

Query: 9   MEREQQRREESKKIEQEP----PYYISPMQPLTECAYGGGMYGTDDEGDLDSL------- 68
           ME+E ++  E  + + EP    P YIS MQP+T  AYGGG+YG DDE +  +L       
Sbjct: 1   MEKEPKQEPEEGRDKYEPHQHQPPYISQMQPVTHEAYGGGLYGQDDEKETTNLEKEAKNI 60

Query: 69  ----QIKKVPASTTQSADGP-VVAEMKLKHPPPPSSGDRDIDITGQSYFQ 103
               Q ++ PAS TQSADGP  V  +  KH  P SSGDRD+DITGQSY Q
Sbjct: 61  EKEPQQQRPPASDTQSADGPDEVKTLTPKHKQPASSGDRDVDITGQSYIQ 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L3932.0e-4797.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G658490 PE=4 SV=1[more]
A0A1S3BV262.5e-4290.20uncharacterized protein LOC103493802 OS=Cucumis melo OX=3656 GN=LOC103493802 PE=... [more]
A0A6J1IJZ94.7e-3378.43uncharacterized protein LOC111476971 OS=Cucurbita maxima OX=3661 GN=LOC111476971... [more]
A0A6J1FEB24.7e-3378.43uncharacterized protein LOC111443294 OS=Cucurbita moschata OX=3662 GN=LOC1114432... [more]
A0A6J1BT981.3e-3076.47uncharacterized protein LOC111005558 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
Match NameE-valueIdentityDescription
XP_011654420.17.07e-6497.06uncharacterized protein LOC105435391 [Cucumis sativus][more]
XP_008452943.13.53e-5790.20PREDICTED: uncharacterized protein LOC103493802 [Cucumis melo][more]
KAG6591229.19.09e-4679.41hypothetical protein SDJN03_13575, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022936823.15.26e-4578.43uncharacterized protein LOC111443294 [Cucurbita moschata] >XP_022976625.1 unchar... [more]
XP_038899828.11.51e-4478.43uncharacterized protein LOC120087055 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT5G42290.15.5e-1849.09transcription activator-related [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy7G132110.1Chy7G132110.1mRNA