Chy7G131860 (gene) Cucumber (hystrix) v1

Overview
NameChy7G131860
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionDNA ligase
LocationchrH07: 2907438 .. 2908455 (-)
RNA-Seq ExpressionChy7G131860
SyntenyChy7G131860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAACCACTACAATCCATTTTCCTTCACCCACAAGCTAAAATCCCCAATCTCTTGTTTCCGCCCCGATCACGATCCCGAATTACACGAAAACGAACACGATAACCCTTCTTCTCCAACATCTCCTGCTCTCAAATCAATGACCTCTGACCTCCCGGAGCTCCGTGGAATGTGCCGGAGTCTTGTCGCTCGGATCAGCTGGCCGAGTCGCCGACGCTACCATCACTCTACTGATTTTCGATACGATCCTTCCAGCTATGCCCTTAATTTCGAGGACGAACAACTTCGACATGATGACGAGTTCCCAATTAGGGATTTCACTTCGAGATTGCCGGCGTCGCCGCCGCCCGTAAATCTCATGCGATTTTGAAACCATGGGGTTGGGGATCTTCAGGGAGTCTCTACCCATTGATTCTAACTGTGTGTATACCGTAATTTGATAAAGGTGTTATTCGTAGAGCTAAATGTATAGATATCTAAAAAGCTCTCTAATTAATTATGTATTATTTCTATTGTTATTATTAATTAACTGATTATGTTTGCCTCTAATTTCGTTTAGTTTCACTAAACCTTAAATTTGTTCGTTAGATTTAGTTAAATTACTGTTATGTGTACTGATTATTGTTGGTTATGAAGAACTAAAAGATTTGGAAAAAGAGGACTAATCAATGCAGTAATTATATAACCGAATTAAACCTCTCTAATTGATGAATTTGATAATCTTAATAAATATGTACAAACTATTAGTTTCTTCATTCTCCCACCAAATTGGATCGAAGTGATTTGAGAAAATTTAGACTTTTACAATTGATTAATAAATATTCGTTACAAAAAAAATTACAAACACTTAGAAAGTAAATTCAGACCGACCATACAAATCTATATCTTAACATATAGTGAATTATCAACTTAATCATTGTTATTAATATAGTTCAATTTAAACTCTAAACTTTAATTTTTTTTTTGTTTAGTAGGTAGATGAATTATGGAAGGGGGAGTCGTGCATCTCGAAGTAG

mRNA sequence

ATGTTCAACCACTACAATCCATTTTCCTTCACCCACAAGCTAAAATCCCCAATCTCTTGTTTCCGCCCCGATCACGATCCCGAATTACACGAAAACGAACACGATAACCCTTCTTCTCCAACATCTCCTGCTCTCAAATCAATGACCTCTGACCTCCCGGAGCTCCGTGGAATGTGCCGGAGTCTTGTCGCTCGGATCAGCTGGCCGAGTCGCCGACGCTACCATCACTCTACTGATTTTCGATACGATCCTTCCAGCTATGCCCTTAATTTCGAGGACGAACAACTTCGACATGATGACGAGTTCCCAATTAGGGATTTCACTTCGAGATTGCCGGCGTCGCCGCCGCCCGTAGATGAATTATGGAAGGGGGAGTCGTGCATCTCGAAGTAG

Coding sequence (CDS)

ATGTTCAACCACTACAATCCATTTTCCTTCACCCACAAGCTAAAATCCCCAATCTCTTGTTTCCGCCCCGATCACGATCCCGAATTACACGAAAACGAACACGATAACCCTTCTTCTCCAACATCTCCTGCTCTCAAATCAATGACCTCTGACCTCCCGGAGCTCCGTGGAATGTGCCGGAGTCTTGTCGCTCGGATCAGCTGGCCGAGTCGCCGACGCTACCATCACTCTACTGATTTTCGATACGATCCTTCCAGCTATGCCCTTAATTTCGAGGACGAACAACTTCGACATGATGACGAGTTCCCAATTAGGGATTTCACTTCGAGATTGCCGGCGTCGCCGCCGCCCGTAGATGAATTATGGAAGGGGGAGTCGTGCATCTCGAAGTAG

Protein sequence

MFNHYNPFSFTHKLKSPISCFRPDHDPELHENEHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRHDDEFPIRDFTSRLPASPPPVDELWKGESCISK*
Homology
BLAST of Chy7G131860 vs. ExPASy TrEMBL
Match: A0A0A0L4E2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652740 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.2e-57
Identity = 112/119 (94.12%), Postives = 114/119 (95.80%), Query Frame = 0

Query: 1   MFNHYNPFSFTHKLKSPISCFRPDHDPELHENEHDNPSSPTSPALKSMTSDLPELRGMCR 60
           MFNHYNPFSFTHKLKSPISCFRPDHDPEL    HDNPSSPTSPALKSMTSDLPELRGMCR
Sbjct: 1   MFNHYNPFSFTHKLKSPISCFRPDHDPEL----HDNPSSPTSPALKSMTSDLPELRGMCR 60

Query: 61  SLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRHDDEFPIRDFTSRLPASPPPVD 120
           SLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLR+DDEFPIRDFTSRLPASPP V+
Sbjct: 61  SLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPASPPHVN 115

BLAST of Chy7G131860 vs. ExPASy TrEMBL
Match: A0A5A7VBS3 (DNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00970 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.9e-51
Identity = 104/118 (88.14%), Postives = 106/118 (89.83%), Query Frame = 0

Query: 1   MFNHYNPFSFTHKLKSPI-SCFRPDHDPELHENEHDNPSSPTSPALKSMTSDLPELRGMC 60
           MFNHYNPFSFTHKLKS I SCFRPDHD ELHENE DN      PALKSMTSDLPELRGMC
Sbjct: 1   MFNHYNPFSFTHKLKSSIPSCFRPDHDAELHENEDDN------PALKSMTSDLPELRGMC 60

Query: 61  RSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRHDDEFPIRDFTSRLPASPPP 118
           RSLVARISWPSRRRYHHS DFRYDPSSYALNFEDEQ+R D+EFPIRDFTSRLPASPPP
Sbjct: 61  RSLVARISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDFTSRLPASPPP 112

BLAST of Chy7G131860 vs. ExPASy TrEMBL
Match: A0A1S3BVQ9 (uncharacterized protein LOC103493778 OS=Cucumis melo OX=3656 GN=LOC103493778 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.9e-51
Identity = 104/118 (88.14%), Postives = 106/118 (89.83%), Query Frame = 0

Query: 1   MFNHYNPFSFTHKLKSPI-SCFRPDHDPELHENEHDNPSSPTSPALKSMTSDLPELRGMC 60
           MFNHYNPFSFTHKLKS I SCFRPDHD ELHENE DN      PALKSMTSDLPELRGMC
Sbjct: 1   MFNHYNPFSFTHKLKSSIPSCFRPDHDAELHENEDDN------PALKSMTSDLPELRGMC 60

Query: 61  RSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRHDDEFPIRDFTSRLPASPPP 118
           RSLVARISWPSRRRYHHS DFRYDPSSYALNFEDEQ+R D+EFPIRDFTSRLPASPPP
Sbjct: 61  RSLVARISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDFTSRLPASPPP 112

BLAST of Chy7G131860 vs. ExPASy TrEMBL
Match: A0A6J1FP70 (uncharacterized protein LOC111446022 OS=Cucurbita moschata OX=3662 GN=LOC111446022 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.4e-36
Identity = 83/116 (71.55%), Postives = 90/116 (77.59%), Query Frame = 0

Query: 1   MFNHYNPFSFTHKLKSPISCFRPDHDPELHENEHDNPSSPTSPALKSMTSDLPELRGMCR 60
           M N Y+PFSFT KLKS I CFR DH   L      +P +P SP LKSM ++ PELRGMCR
Sbjct: 2   MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSP-LKSMAAEFPELRGMCR 61

Query: 61  SLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRHDDEFPIRDFTSRLPASPP 117
           +LVARI   SRRRYHHS DFRYDPSSYALNFEDEQ+R DDEFPIRDF SRLPASPP
Sbjct: 62  NLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPP 115

BLAST of Chy7G131860 vs. ExPASy TrEMBL
Match: A0A6J1J1H3 (uncharacterized protein LOC111480417 OS=Cucurbita maxima OX=3661 GN=LOC111480417 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35
Identity = 80/116 (68.97%), Postives = 89/116 (76.72%), Query Frame = 0

Query: 1   MFNHYNPFSFTHKLKSPISCFRPDHDPELHENEHDNPSSPTSPALKSMTSDLPELRGMCR 60
           M N Y+PFSFT KLKS I CFR DH       +  +P +P SP LKSM ++ PE+RGMCR
Sbjct: 2   MLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSP-LKSMAAEFPEIRGMCR 61

Query: 61  SLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRHDDEFPIRDFTSRLPASPP 117
           +LVARI    RRRYHHS DFRYDPSSYALNFEDEQ+R DDEFPIRDF SRLPASPP
Sbjct: 62  NLVARIG-RCRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPP 115

BLAST of Chy7G131860 vs. NCBI nr
Match: KGN55462.1 (hypothetical protein Csa_012581 [Cucumis sativus])

HSP 1 Score: 234 bits (598), Expect = 1.77e-77
Identity = 112/119 (94.12%), Postives = 114/119 (95.80%), Query Frame = 0

Query: 1   MFNHYNPFSFTHKLKSPISCFRPDHDPELHENEHDNPSSPTSPALKSMTSDLPELRGMCR 60
           MFNHYNPFSFTHKLKSPISCFRPDHDPEL    HDNPSSPTSPALKSMTSDLPELRGMCR
Sbjct: 1   MFNHYNPFSFTHKLKSPISCFRPDHDPEL----HDNPSSPTSPALKSMTSDLPELRGMCR 60

Query: 61  SLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRHDDEFPIRDFTSRLPASPPPVD 119
           SLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLR+DDEFPIRDFTSRLPASPP V+
Sbjct: 61  SLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPASPPHVN 115

BLAST of Chy7G131860 vs. NCBI nr
Match: XP_008452891.1 (PREDICTED: uncharacterized protein LOC103493778 [Cucumis melo] >KAA0064610.1 DNA ligase [Cucumis melo var. makuwa] >TYK19982.1 DNA ligase [Cucumis melo var. makuwa])

HSP 1 Score: 213 bits (543), Expect = 4.32e-69
Identity = 105/124 (84.68%), Postives = 108/124 (87.10%), Query Frame = 0

Query: 1   MFNHYNPFSFTHKLKSPI-SCFRPDHDPELHENEHDNPSSPTSPALKSMTSDLPELRGMC 60
           MFNHYNPFSFTHKLKS I SCFRPDHD ELHENE DNP      ALKSMTSDLPELRGMC
Sbjct: 1   MFNHYNPFSFTHKLKSSIPSCFRPDHDAELHENEDDNP------ALKSMTSDLPELRGMC 60

Query: 61  RSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRHDDEFPIRDFTSRLPASPPPVD 120
           RSLVARISWPSRRRYHHS DFRYDPSSYALNFEDEQ+R D+EFPIRDFTSRLPASPPP  
Sbjct: 61  RSLVARISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDFTSRLPASPPPPV 118

Query: 121 ELWK 123
            L +
Sbjct: 121 NLMR 118

BLAST of Chy7G131860 vs. NCBI nr
Match: XP_023523424.1 (uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164 bits (416), Expect = 1.10e-49
Identity = 83/116 (71.55%), Postives = 91/116 (78.45%), Query Frame = 0

Query: 1   MFNHYNPFSFTHKLKSPISCFRPDHDPELHENEHDNPSSPTSPALKSMTSDLPELRGMCR 60
           M N Y+PFSFT KLKS I CFR DH   L   +  +P +P SP LKSM ++ PELRGMCR
Sbjct: 1   MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEDDSSPRTPRSP-LKSMAAEFPELRGMCR 60

Query: 61  SLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRHDDEFPIRDFTSRLPASPP 116
           +LVARI   SRRRYHHS DFRYDPSSYALNFEDEQ+R DDEFPIRDF SRLPASPP
Sbjct: 61  NLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPP 114

BLAST of Chy7G131860 vs. NCBI nr
Match: KAG7031776.1 (hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163 bits (413), Expect = 3.16e-49
Identity = 88/122 (72.13%), Postives = 95/122 (77.87%), Query Frame = 0

Query: 1   MFNHYNPFSFTHKLKSPISCFRPDHDPELHENEHDN-PSSPTSPALKSMTSDLPELRGMC 60
           M N Y+PFSFT KLKS I CFR DH   L ENE D+ P +P SP LKSM ++ PELRGMC
Sbjct: 1   MLNDYHPFSFTRKLKSSILCFRRDHGDFL-ENEGDSSPRTPRSP-LKSMAAEFPELRGMC 60

Query: 61  RSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRHDDEFPIRDFTSRLPASPPPVD 120
           R+LVARI   SRRRYHHS DFRYDPSSYALNFEDEQ+R DDEFPIRDF SRLPASPP   
Sbjct: 61  RNLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPTSP 119

BLAST of Chy7G131860 vs. NCBI nr
Match: XP_022940408.1 (uncharacterized protein LOC111446022 [Cucurbita moschata] >KAG6608139.1 hypothetical protein SDJN03_01481, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163 bits (413), Expect = 3.26e-49
Identity = 88/122 (72.13%), Postives = 95/122 (77.87%), Query Frame = 0

Query: 1   MFNHYNPFSFTHKLKSPISCFRPDHDPELHENEHDN-PSSPTSPALKSMTSDLPELRGMC 60
           M N Y+PFSFT KLKS I CFR DH   L ENE D+ P +P SP LKSM ++ PELRGMC
Sbjct: 2   MLNDYHPFSFTRKLKSSILCFRRDHGDFL-ENEGDSSPRTPRSP-LKSMAAEFPELRGMC 61

Query: 61  RSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRHDDEFPIRDFTSRLPASPPPVD 120
           R+LVARI   SRRRYHHS DFRYDPSSYALNFEDEQ+R DDEFPIRDF SRLPASPP   
Sbjct: 62  RNLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPTSP 120

BLAST of Chy7G131860 vs. TAIR 10
Match: AT5G11070.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 7.0e-10
Identity = 49/122 (40.16%), Postives = 63/122 (51.64%), Query Frame = 0

Query: 12  HKLKSPISCFRPDH--DPE--LHENEHDNPSSPTSPALKSMTSDLPELRGMCRSLVARIS 71
           H+++SPI C   +   +PE  +   E   P SP    LKS   +L ELR  CR + +RI 
Sbjct: 20  HRMRSPICCIGANAVVEPEAMMIGGEQRTPRSPYE-WLKSTAQEL-ELRDRCRRVKSRIK 79

Query: 72  WPSR----------RRYHHST----DFRYDPSSYALNFEDEQLRHDDEFPIRDFTSRLPA 116
              R            +HHS     DF YDP SYALNFED  +R DD+    +FT+RLP 
Sbjct: 80  VTCRNNNCAYNNCVHHHHHSQSYPGDFSYDPLSYALNFED-NVRADDDGSFPNFTARLPQ 138

BLAST of Chy7G131860 vs. TAIR 10
Match: AT5G35090.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-08
Identity = 46/136 (33.82%), Postives = 62/136 (45.59%), Query Frame = 0

Query: 9   SFTHKLKSPI---SCFR----------PDHDPELHENEHDNPSSPTSPALKS----MTSD 68
           S   KLKS      CFR          PD  P        +  SP    +K+    +T  
Sbjct: 10  SLQKKLKSRFCIAGCFRTTNHHHHDNIPDDLPSSPVTTEKSTQSPHGGGMKTKSPRLTRT 69

Query: 69  LPELRGMCRSLVAR-------ISWPSRRRYHHSTDFRYDPSSYALNF----EDEQLRHDD 117
           L +    C+SL+ R       +    +    H+ DF YDPSSYALNF    ED+ +   D
Sbjct: 70  LSKSHEKCKSLIHRMGGGVGGVGGHGKHIRRHTADFHYDPSSYALNFDKGDEDDNI---D 129

BLAST of Chy7G131860 vs. TAIR 10
Match: AT3G01430.1 (BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 3.4e-04
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 0

Query: 80  FRYDPSSYALNFED-EQLRH-DDEFPIRDFTSRLPASPPPV 119
           FRYD  SY+LNF+D  Q  H DDEFP RD++ R  A   PV
Sbjct: 125 FRYDQLSYSLNFDDGNQTGHFDDEFPYRDYSMRFAAPSLPV 165

BLAST of Chy7G131860 vs. TAIR 10
Match: AT5G14890.1 (NHL domain-containing protein )

HSP 1 Score: 40.8 bits (94), Expect = 9.8e-04
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 0

Query: 80  FRYDPSSYALNFED-EQLRH-DDEFPIRDFTSRLPASPPPV 119
           FRYD  SY+LNF+D +Q  H +DEFP RD++ R  A   PV
Sbjct: 695 FRYDSWSYSLNFDDGKQTGHFEDEFPYRDYSMRFAAPSLPV 735

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L4E21.2e-5794.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652740 PE=4 SV=1[more]
A0A5A7VBS34.9e-5188.14DNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00970 PE=... [more]
A0A1S3BVQ94.9e-5188.14uncharacterized protein LOC103493778 OS=Cucumis melo OX=3656 GN=LOC103493778 PE=... [more]
A0A6J1FP704.4e-3671.55uncharacterized protein LOC111446022 OS=Cucurbita moschata OX=3662 GN=LOC1114460... [more]
A0A6J1J1H31.3e-3568.97uncharacterized protein LOC111480417 OS=Cucurbita maxima OX=3661 GN=LOC111480417... [more]
Match NameE-valueIdentityDescription
KGN55462.11.77e-7794.12hypothetical protein Csa_012581 [Cucumis sativus][more]
XP_008452891.14.32e-6984.68PREDICTED: uncharacterized protein LOC103493778 [Cucumis melo] >KAA0064610.1 DNA... [more]
XP_023523424.11.10e-4971.55uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo][more]
KAG7031776.13.16e-4972.13hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022940408.13.26e-4972.13uncharacterized protein LOC111446022 [Cucurbita moschata] >KAG6608139.1 hypothet... [more]
Match NameE-valueIdentityDescription
AT5G11070.17.0e-1040.16unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0... [more]
AT5G35090.11.3e-0833.82unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0... [more]
AT3G01430.13.4e-0456.10BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:... [more]
AT5G14890.19.8e-0453.66NHL domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..35
NoneNo IPR availablePANTHERPTHR33168STRESS INDUCED PROTEIN-RELATEDcoord: 11..117
NoneNo IPR availablePANTHERPTHR33168:SF61SUBFAMILY NOT NAMEDcoord: 11..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy7G131860.1Chy7G131860.1mRNA