Chy7G131640 (gene) Cucumber (hystrix) v1

Overview


Name	Chy7G131640
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	transcription initiation factor TFIID subunit 5
Location	chrH07: 2727525 .. 2727694 (+)
RNA-Seq Expression	Chy7G131640
Synteny	Chy7G131640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGAAGAACTGATTGCGAATTTTGTGTCAGCATACTTGAAGAAGAAGGGTTTCAAGGAAACGGAACAAGCTTTTCAGGAAGAGCTACGTCAGAACAAGACTAATTCTTCTTCTCCGTCTTCTTTCATTGACGTCGACGTTGCTAAGCACTTACTCTCCTTCTCCGA

mRNA sequence

ATGGACGAAGAACTGATTGCGAATTTTGTGTCAGCATACTTGAAGAAGAAGGGTTTCAAGGAAACGGAACAAGCTTTTCAGGAAGAGCTACGTCAGAACAAGACTAATTCTTCTTCTCCGTCTTCTTTCATTGACGTCGACGTTGCTAAGCACTTACTCTCCTTCTCCGA

Coding sequence (CDS)

ATGGACGAAGAACTGATTGCGAATTTTGTGTCAGCATACTTGAAGAAGAAGGGTTTCAAGGAAACGGAACAAGCTTTTCAGGAAGAGCTACGTCAGAACAAGACTAATTCTTCTTCTCCGTCTTCTTTCATTGACGTCGACGTTGCTAAGCACTTACTCTCCTTCTCCGA

Protein sequence

MDEELIANFVSAYLKKKGFKETEQAFQEELRQNKTNSSSPSSFIDVDVAKHLLSFSX

Homology

[Close]

BLAST of Chy7G131640 vs. ExPASy TrEMBL
Match: A0A0A0L139 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652030 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 8.6e-21
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MDEELIANFVSAYLKKKGFKETEQAFQEELRQNKTNSSSPSSFIDVDVAKHLLSFS 57
          MDEELIANFVSAYLKKKGFKETEQAFQEELRQNKTNSSSPSSFIDVDVAKHLLSFS
Sbjct: 1  MDEELIANFVSAYLKKKGFKETEQAFQEELRQNKTNSSSPSSFIDVDVAKHLLSFS 56

[Close]

BLAST of Chy7G131640 vs. ExPASy TrEMBL
Match: A0A1S3BVN5 (transcription initiation factor TFIID subunit 5 OS=Cucumis melo OX=3656 GN=LOC103493756 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.1e-18
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 1  MDEELIANFVSAYLKKKGFKETEQAFQEELRQNKTNSSSPSSFIDVDVAKHLLSFS 57
          MDEELIANFVSAYLKKKGFKETEQAFQEELR NKTN SSPSS +D+DVAKHLLSFS
Sbjct: 1  MDEELIANFVSAYLKKKGFKETEQAFQEELRHNKTNCSSPSSLVDIDVAKHLLSFS 56

[Close]

BLAST of Chy7G131640 vs. ExPASy TrEMBL
Match: A0A5D3D945 (Transcription initiation factor TFIID subunit 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001160 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.4e-18
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 1  MDEELIANFVSAYLKKKGFKETEQAFQEELRQNKTNSSSPSSFIDVDVAKHLLSFS 57
          MDEELIANFVSAYLKKKGF+ETEQAFQEELR NKTN SSPSS +D+DVAKHLLSFS
Sbjct: 1  MDEELIANFVSAYLKKKGFRETEQAFQEELRHNKTNCSSPSSLVDIDVAKHLLSFS 56

[Close]

BLAST of Chy7G131640 vs. ExPASy TrEMBL
Match: A0A5A7VGF1 (Transcription initiation factor TFIID subunit 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G003110 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.4e-18
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 1  MDEELIANFVSAYLKKKGFKETEQAFQEELRQNKTNSSSPSSFIDVDVAKHLLSFS 57
          MDEELIANFVSAYLKKKGF+ETEQAFQEELR NKTN SSPSS +D+DVAKHLLSFS
Sbjct: 1  MDEELIANFVSAYLKKKGFRETEQAFQEELRHNKTNCSSPSSLVDIDVAKHLLSFS 56

[Close]

BLAST of Chy7G131640 vs. ExPASy TrEMBL
Match: A0A6J1IID2 (transcription initiation factor TFIID subunit 5 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111476549 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.2e-15
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 1  MDEELIANFVSAYLKKKGFKETEQAFQEELRQNKTNSSSPSSFIDVDVAKHLLSFS 57
          MDEE IANFVSAYLKKKGFKETEQAFQ+ELR NKTNSSS +S ID+D AK LLSFS
Sbjct: 1  MDEEQIANFVSAYLKKKGFKETEQAFQDELRHNKTNSSSSASSIDLDFAKRLLSFS 56

[Close]

BLAST of Chy7G131640 vs. NCBI nr
Match: XP_004145505.1 (transcription initiation factor TFIID subunit 5 isoform X1 [Cucumis sativus] >KGN55438.1 hypothetical protein Csa_011930 [Cucumis sativus])

HSP 1 Score: 106 bits (264), Expect = 6.76e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MDEELIANFVSAYLKKKGFKETEQAFQEELRQNKTNSSSPSSFIDVDVAKHLLSFS 56
          MDEELIANFVSAYLKKKGFKETEQAFQEELRQNKTNSSSPSSFIDVDVAKHLLSFS
Sbjct: 1  MDEELIANFVSAYLKKKGFKETEQAFQEELRQNKTNSSSPSSFIDVDVAKHLLSFS 56

[Close]

BLAST of Chy7G131640 vs. NCBI nr
Match: XP_008452860.1 (PREDICTED: transcription initiation factor TFIID subunit 5 [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 1.85e-22
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 1  MDEELIANFVSAYLKKKGFKETEQAFQEELRQNKTNSSSPSSFIDVDVAKHLLSFS 56
          MDEELIANFVSAYLKKKGFKETEQAFQEELR NKTN SSPSS +D+DVAKHLLSFS
Sbjct: 1  MDEELIANFVSAYLKKKGFKETEQAFQEELRHNKTNCSSPSSLVDIDVAKHLLSFS 56

[Close]

BLAST of Chy7G131640 vs. NCBI nr
Match: TYK20000.1 (transcription initiation factor TFIID subunit 5 [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 4.72e-22
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 1  MDEELIANFVSAYLKKKGFKETEQAFQEELRQNKTNSSSPSSFIDVDVAKHLLSFS 56
          MDEELIANFVSAYLKKKGF+ETEQAFQEELR NKTN SSPSS +D+DVAKHLLSFS
Sbjct: 1  MDEELIANFVSAYLKKKGFRETEQAFQEELRHNKTNCSSPSSLVDIDVAKHLLSFS 56

[Close]

BLAST of Chy7G131640 vs. NCBI nr
Match: KAA0064589.1 (transcription initiation factor TFIID subunit 5 [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 4.73e-22
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 1  MDEELIANFVSAYLKKKGFKETEQAFQEELRQNKTNSSSPSSFIDVDVAKHLLSFS 56
          MDEELIANFVSAYLKKKGF+ETEQAFQEELR NKTN SSPSS +D+DVAKHLLSFS
Sbjct: 1  MDEELIANFVSAYLKKKGFRETEQAFQEELRHNKTNCSSPSSLVDIDVAKHLLSFS 56

[Close]

BLAST of Chy7G131640 vs. NCBI nr
Match: XP_038897348.1 (transcription initiation factor TFIID subunit 5 [Benincasa hispida])

HSP 1 Score: 94.4 bits (233), Expect = 1.07e-20
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1  MDEELIANFVSAYLKKKGFKETEQAFQEELRQNKTNSSSPSSFIDVDVAKHLLSFS 56
          MDEE IANFVSAYLKKKGFKETEQAFQEELRQNKTNSSS SS ID+D AKHLL+FS
Sbjct: 1  MDEEQIANFVSAYLKKKGFKETEQAFQEELRQNKTNSSSSSSSIDIDFAKHLLAFS 56

The following BLAST results are available for this feature:

BLAST of Chy7G131640 vs.


Match Name	E-value	Identity	Description

BLAST of Chy7G131640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L139	8.6e-21	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652030 PE=3 SV=1	[more]
A0A1S3BVN5	1.1e-18	91.07	transcription initiation factor TFIID subunit 5 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3D945	2.4e-18	89.29	Transcription initiation factor TFIID subunit 5 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7VGF1	2.4e-18	89.29	Transcription initiation factor TFIID subunit 5 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A6J1IID2	4.2e-15	83.93	transcription initiation factor TFIID subunit 5 isoform X2 OS=Cucurbita maxima O...	[more]

BLAST of Chy7G131640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145505.1	6.76e-25	100.00	transcription initiation factor TFIID subunit 5 isoform X1 [Cucumis sativus] >KG...	[more]
XP_008452860.1	1.85e-22	91.07	PREDICTED: transcription initiation factor TFIID subunit 5 [Cucumis melo]	[more]
TYK20000.1	4.72e-22	89.29	transcription initiation factor TFIID subunit 5 [Cucumis melo var. makuwa]	[more]
KAA0064589.1	4.73e-22	89.29	transcription initiation factor TFIID subunit 5 [Cucumis melo var. makuwa]	[more]
XP_038897348.1	1.07e-20	89.29	transcription initiation factor TFIID subunit 5 [Benincasa hispida]	[more]

BLAST of Chy7G131640 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006594	LIS1 homology motif	SMART	SM00667	Lish	coord: 2..34 e-value: 0.0095 score: 25.1
IPR006594	LIS1 homology motif	PFAM	PF08513	LisH	coord: 10..29 e-value: 9.2E-5 score: 22.3
IPR006594	LIS1 homology motif	PROSITE	PS50896	LISH	coord: 2..34 score: 9.098568

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy7G131640.1	Chy7G131640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity
molecular_function	GO:0003743	translation initiation factor activity