Chy7G130000 (gene) Cucumber (hystrix) v1

Overview
NameChy7G130000
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH07: 1420709 .. 1421217 (-)
RNA-Seq ExpressionChy7G130000
SyntenyChy7G130000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCTCGACTGCTTCTGTTAATGACAGTTATCACTCTTCTGGTCTCTGGTGATAACAAAGCGACGATGGGGGCTGCTGTTGCCGTTATCGATCAACATCCGTTATCCAATATGCAGGAGAAGCACAGGAAACATCTGCAGTTGCTGTCGTCACCCCCACTGCGGAGTCACTTGTTCAGTGCTCTCTTTGCAAGCAAGAGAAAGGTCCCCAACACTTGGGATCCACTCCACAATCGTTGAAGCTGTCTGGTTGTTTGAATCTTTAGGGAGGAATAGGATTATGGGATTATGAGGTTGGCTTCTGATCTGATTAGAGTATGAATTTCGGTCAAAATAGTGGTGTTGATTCTATTGGTACACGTGTTCAGGTGGACTTTTGGTTTGCTTGCCTTCCTTTAGTTCGTGAATTCGGACATCTACTCGATCTCAGCTTTTTTCTGGGTGCAAACTTTATGGGGAAATGCTATCTATTTCTATCCCTTTTCTTTTTTTCACAATCATTTTAG

mRNA sequence

ATGGAAGCTCGACTGCTTCTGTTAATGACAGTTATCACTCTTCTGGTCTCTGGTGATAACAAAGCGACGATGGGGGCTGCTGTTGCCGTTATCGATCAACATCCGTTATCCAATATGCAGGAGAAGCACAGGAAACATCTGCAGTTGCTGTCGTCACCCCCACTGCGGAGTCACTTGTTCAGTGCTCTCTTTGCAAGCAAGAGAAAGAGTATGAATTTCGGTCAAAATAGTGGTGTTGATTCTATTGGTACACGTGTTCAGGTGGACTTTTGGTTTGCTTGCCTTCCTTTAGTTCGTGAATTCGGACATCTACTCGATCTCAGCTTTTTTCTGGGTGCAAACTTTATGGGGAAATGCTATCTATTTCTATCCCTTTTCTTTTTTTCACAATCATTTTAG

Coding sequence (CDS)

ATGGAAGCTCGACTGCTTCTGTTAATGACAGTTATCACTCTTCTGGTCTCTGGTGATAACAAAGCGACGATGGGGGCTGCTGTTGCCGTTATCGATCAACATCCGTTATCCAATATGCAGGAGAAGCACAGGAAACATCTGCAGTTGCTGTCGTCACCCCCACTGCGGAGTCACTTGTTCAGTGCTCTCTTTGCAAGCAAGAGAAAGAGTATGAATTTCGGTCAAAATAGTGGTGTTGATTCTATTGGTACACGTGTTCAGGTGGACTTTTGGTTTGCTTGCCTTCCTTTAGTTCGTGAATTCGGACATCTACTCGATCTCAGCTTTTTTCTGGGTGCAAACTTTATGGGGAAATGCTATCTATTTCTATCCCTTTTCTTTTTTTCACAATCATTTTAG

Protein sequence

MEARLLLLMTVITLLVSGDNKATMGAAVAVIDQHPLSNMQEKHRKHLQLLSSPPLRSHLFSALFASKRKSMNFGQNSGVDSIGTRVQVDFWFACLPLVREFGHLLDLSFFLGANFMGKCYLFLSLFFFSQSF*
Homology
[Close]
BLAST of Chy7G130000 vs. ExPASy TrEMBL
Match: A0A5D3D9C5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002930 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.5e-36
Identity = 82/93 (88.17%), Postives = 86/93 (92.47%), Query Frame = 0 

Query: 1  MEARLLLLMTVITLLVSGDNKATMGAAVAVIDQHPLSNMQEKHRKHLQLLSSPPLRSHLF 60
          MEARLLLLM VITLLVSG+NKATMG AVA++DQHPLSNMQEKHRKHLQLLSSPPLRSHLF
Sbjct: 1  MEARLLLLMAVITLLVSGNNKATMGVAVALVDQHPLSNMQEKHRKHLQLLSSPPLRSHLF 60

Query: 61 SALFASKRKSMNFGQNSGVDSIGTRVQVDFWFA 94
          +ALFASKRKSMNFG N GVDSIG R  VDFWFA
Sbjct: 61 NALFASKRKSMNFGHNGGVDSIGRRGGVDFWFA 93

[Close]
BLAST of Chy7G130000 vs. ExPASy TrEMBL
Match: A0A0A0KZW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641770 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.0e-23
Identity = 66/73 (90.41%), Postives = 67/73 (91.78%), Query Frame = 0 

Query: 1  MEARLLLLMTVITLLVSGDNKATMG-AAVAVIDQHPLSNMQEKHRKHLQLLSSPPLRSHL 60
          MEARLLLLM VITLLVSGDNKATMG AAVA IDQHPLSNMQEKHRKHLQLLSSPP RSHL
Sbjct: 1  MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHL 60

Query: 61 FSALFASKRKSMN 73
          F+ALFASKRK  N
Sbjct: 61 FNALFASKRKVPN 73

[Close]
BLAST of Chy7G130000 vs. NCBI nr
Match: KAA0064426.1 (hypothetical protein E6C27_scaffold255G001340 [Cucumis melo var. makuwa] >TYK20161.1 hypothetical protein E5676_scaffold134G002930 [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (405), Expect = 2.76e-48
Identity = 82/93 (88.17%), Postives = 86/93 (92.47%), Query Frame = 0 

Query: 1  MEARLLLLMTVITLLVSGDNKATMGAAVAVIDQHPLSNMQEKHRKHLQLLSSPPLRSHLF 60
          MEARLLLLM VITLLVSG+NKATMG AVA++DQHPLSNMQEKHRKHLQLLSSPPLRSHLF
Sbjct: 1  MEARLLLLMAVITLLVSGNNKATMGVAVALVDQHPLSNMQEKHRKHLQLLSSPPLRSHLF 60

Query: 61 SALFASKRKSMNFGQNSGVDSIGTRVQVDFWFA 93
          +ALFASKRKSMNFG N GVDSIG R  VDFWFA
Sbjct: 61 NALFASKRKSMNFGHNGGVDSIGRRGGVDFWFA 93

[Close]
BLAST of Chy7G130000 vs. NCBI nr
Match: KAE8649873.1 (hypothetical protein Csa_012848, partial [Cucumis sativus])

HSP 1 Score: 105 bits (261), Expect = 9.37e-27
Identity = 56/62 (90.32%), Postives = 57/62 (91.94%), Query Frame = 0 

Query: 12 ITLLVSGDNKATMGAA-VAVIDQHPLSNMQEKHRKHLQLLSSPPLRSHLFSALFASKRKS 71
          ITLLVSGDNKATMGAA VA IDQHPLSNMQEKHRKHLQLLSSPP RSHLF+ALFASKRK 
Sbjct: 1  ITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHLFNALFASKRKV 60

The following BLAST results are available for this feature:
BLAST of Chy7G130000 vs.
Match NameE-valueIdentityDescription
BLAST of Chy7G130000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D9C54.5e-3688.17Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KZW12.0e-2390.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641770 PE=4 SV=1[more]
BLAST of Chy7G130000 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0064426.12.76e-4888.17hypothetical protein E6C27_scaffold255G001340 [Cucumis melo var. makuwa] >TYK201... [more]
KAE8649873.19.37e-2790.32hypothetical protein Csa_012848, partial [Cucumis sativus][more]
BLAST of Chy7G130000 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy7G130000.1Chy7G130000.1mRNA