Chy7G129620 (gene) Cucumber (hystrix) v1

Overview


Name	Chy7G129620
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Cold regulated protein 27
Location	chrH07: 1129822 .. 1132559 (-)
RNA-Seq Expression	Chy7G129620
Synteny	Chy7G129620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGATTCTGTACCTTCTGATTGGACCGACGAGAAGCACCATTTGTTTCTTGAATCCATGGAAGCATCATTTGTCAGCCAAATGTTTGATTCTGGGCATTCCGTTGGTTCCTGCCCCACCAAGGACAATTCTTCACGCACAAAATTGCTCAGCAAAAGCCAGGCCGCCTCTCACGGCCATTCACAGTTTGGCCAGGTTCAGTGCCAATTGCTTTTTCTTGACGAGTTTTAACTCTTTTCTGATCATGGGCTTGTGAATTCTCAATTTGCCCATTTCTTGCTTTTGTTTATTCAGTTTAAGGTTCTTCGACGAGGCAGCTGGAAGAACATTAATTTTGAACCAACTGAATCTCGATCAAATTTTTTGAATGAATACCAAGCTCTCTCACATAATCCTTGGATACATCACTTTAGAGCTGCTCGTAAAAACAAAAATGTCGCTTGCAAAAGTCAAGCTATCGGTTCAAGAGGAAGAAACTCGTTGTCATTAGGAGCAGCTAATAATTCAGGACCTATACGTGTTTCCGACTCTGATTTGTCCCAACAATATATCAGCAGTAATAAAGGTAAATCTTTTGGCTTTAGATCTTATATATTATCCATAGTTTATTGACAGATTTGTGCCTCCCCTTGGTTGTAATTGTAATTTAGTTTATCAAGTTTAAGTTTGCTAGTTAGTGATTCTACATTGGAAGATGTTTGCTCAGTGTCTGGTATCTACTACCAGAAAGTTCCGAGTCAAAACAGATTGATACAATTTAAGTCAAAGTGAACTCTTTATTGTAATCTGCTTTGTCCAAATCCCAATTATGATTTTTATTGTAAATTGTAAGGCAATCGTAATTTCGCTGATGTGAGACTGAATTATGTTAGATGATAATAACTGTTATAACATTAAGCTCTACAAATGATTGCCACTGCAGAAGTTTCGGATCAGAACTTTGTTGATGAAGTTATAGTAGTTGAAAAAGGAAGCATTGATTGCAATGCCGAAAGGGCCAACGCATCAGAAACAAATGCTTTGATCAATGACCAGGTAATTCAAGTGATATCAACTTAACTACCATCTCTTCCTCCAAAATGATGATCATTGATTTCTTTTTAGGTTGTTCCTTAAATTCCATGAAAAGGAGATGGTGTTTAACAAGAATTATCTTACAGCCAGAAGATAGCTAGATCCCAGATTGTCTCCAAGATGTGCCAAAGGACTTATCGACTACTTTTCTAACTCGGGAAGGACTAAAGATGAGAAATTGTTGGTGAAGTCAATAATGCTCATCTTGATGTTCTTGGGTTTGTTCTGGTAATGTAAGCTCTAATACCTAATACCTTCAGGTGCATGAAGTTACGTATAGTAATTAGTACATCAGCAATTATGATTTTGACTGGGTGGATGTCTATGGTATTGCCATTCAGCATTTGTGTGTGTGTATATATATTTCTTTTGGTTCATCAAGAATATGAAGCATCTATTCTAGTTTTTCGAATGAAATAGTCAGAAAATTTCAATTTTATTCCTCAATTGTTCATGAGTTTATTTATTGGAACAAGATTTTGATTGGGCAATTGATTCTTTGTCAATTAAAATAGATGTTTTGTTCACATCGTTTTGCTTGTGTTGCGTTGTCCATTAAATGAGGATAACAAGATTTTCCCTATAATCTGCGATTGGTCATTTCTCCTTCACAGGTTTGGATTTTTTTGAAGTTTGTTTCAATCTTTGTGGTTGACAAGAACCTGAAGAGACGACGACATCAGTAAATTTTCATTTTGATAAATTGGAAAAGAATAAAGTTGGATGTGTTGATTTTTTATATTTATAGGTCTAATTTTAAAAATGAGAAAAAGTATTTTAAAATTCAAATCTAAGGTCATGTTTAGTGATCGGTTGATTTTTTAATATTGCACTTTTTTTTCTTTTCATTTTTTTTCTTTAAATGGGTTTCAACCTCTTAACCAAACATTTGACATCTCAATTAAAGCTTTTTCTAGAGATCTTTTTCTCTCTCTTTAAAGTAACTGAAAATTTCAAATATTTTCTTACCTAATATGAAAATAATACAAAATAAACAATGAGTAAATTAGCATAAAATGTGAATTCTTAAACCATCTTAAAATGTTTGAGTTGAGATTTTTTGCCCTCCATAAATAAATTGATGGATGGAGTTGTCCACATGCAAATGTGAATAGAAATTCTATTCATATATTTATTTTACGATATCATTTTTTTACACAAAAATTAAAAGGTACTGTTAGATTACTTAATTTTAGATAAATTAGTACTCACCTTCACCTTCACCTTCATTTTGTTGATGCCAAAATAAGAAGAAATTCACATGTCTATTACAAGAATGACAAACTTATAATTAAAAGAAACATAACCCACAAAATAAAAAGAATTTAGAGTTCTTACTACAAGGTTTTCGATTTCGATGCTAACAATGTTTCTAGTAAAATTTTGTTTGATTCATAATAATGCATTAATGAGTTAGACTATTAGAACAATCATGCATTGTTCATAAAATGGAAAGAATTGATCTCAACCACATCTTAAATCAAGGTCGAAGGGGAAAAGACCATTCGAACGATAGACCCAAACTATGTACTCCCTAAAACCCAAATTAAGTCACACCATGGCTGATGGCACATTGAATTCAATTGTGAGTTTGGTATTTTTAGGGTAGCTATCTTGGTTTCCCATTTATCCAAAAAGGGAAAAAATGGAAAATCATGTAA

mRNA sequence

ATGACGGATTCTGTACCTTCTGATTGGACCGACGAGAAGCACCATTTGTTTCTTGAATCCATGGAAGCATCATTTGTCAGCCAAATGTTTGATTCTGGGCATTCCGTTGGTTCCTGCCCCACCAAGGACAATTCTTCACGCACAAAATTGCTCAGCAAAAGCCAGGCCGCCTCTCACGGCCATTCACAGTTTGGCCAGTTTAAGGTTCTTCGACGAGGCAGCTGGAAGAACATTAATTTTGAACCAACTGAATCTCGATCAAATTTTTTGAATGAATACCAAGCTCTCTCACATAATCCTTGGATACATCACTTTAGAGCTGCTCGTAAAAACAAAAATGTCGCTTGCAAAAGTCAAGCTATCGGTTCAAGAGGAAGAAACTCGTTGTCATTAGGAGCAGCTAATAATTCAGGACCTATACGTGTTTCCGACTCTGATTTGTCCCAACAATATATCAGCAGTAATAAAGAAGTTTCGGATCAGAACTTTGTTGATGAAGTTATAGTAGTTGAAAAAGGAAGCATTGATTGCAATGCCGAAAGGGCCAACGCATCAGAAACAAATGCTTTGATCAATGACCAGGGTAGCTATCTTGGTTTCCCATTTATCCAAAAAGGGAAAAAATGGAAAATCATGTAA

Coding sequence (CDS)

ATGACGGATTCTGTACCTTCTGATTGGACCGACGAGAAGCACCATTTGTTTCTTGAATCCATGGAAGCATCATTTGTCAGCCAAATGTTTGATTCTGGGCATTCCGTTGGTTCCTGCCCCACCAAGGACAATTCTTCACGCACAAAATTGCTCAGCAAAAGCCAGGCCGCCTCTCACGGCCATTCACAGTTTGGCCAGTTTAAGGTTCTTCGACGAGGCAGCTGGAAGAACATTAATTTTGAACCAACTGAATCTCGATCAAATTTTTTGAATGAATACCAAGCTCTCTCACATAATCCTTGGATACATCACTTTAGAGCTGCTCGTAAAAACAAAAATGTCGCTTGCAAAAGTCAAGCTATCGGTTCAAGAGGAAGAAACTCGTTGTCATTAGGAGCAGCTAATAATTCAGGACCTATACGTGTTTCCGACTCTGATTTGTCCCAACAATATATCAGCAGTAATAAAGAAGTTTCGGATCAGAACTTTGTTGATGAAGTTATAGTAGTTGAAAAAGGAAGCATTGATTGCAATGCCGAAAGGGCCAACGCATCAGAAACAAATGCTTTGATCAATGACCAGGGTAGCTATCTTGGTTTCCCATTTATCCAAAAAGGGAAAAAATGGAAAATCATGTAA

Protein sequence

MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQAASHGHSQFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVACKSQAIGSRGRNSLSLGAANNSGPIRVSDSDLSQQYISSNKEVSDQNFVDEVIVVEKGSIDCNAERANASETNALINDQGSYLGFPFIQKGKKWKIM*

Homology

[Close]

BLAST of Chy7G129620 vs. ExPASy Swiss-Prot
Match: Q8L8T7 (Cold-regulated protein 27 OS=Arabidopsis thaliana OX=3702 GN=COR27 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.5e-11
Identity = 59/175 (33.71%), Postives = 88/175 (50.29%), Query Frame = 0


Query: 7   SDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQAASHGHSQFGQ 66
           ++WT+EKH L+L+SMEASFV Q++   +S+G+    +N S +      +  S       Q
Sbjct: 46  TEWTNEKHSLYLKSMEASFVDQLY---NSLGALGKNENVSESTRFGSGRKPSQ-----EQ 105

Query: 67  FKVLRRGSWKNINFEPTESRSNFL---NEYQALSHNPWIHHFRAARKNKNVAC---KSQA 126
           FKVL  G W+ IN +  E R N     N ++ L  +PWI H++   K +       ++Q 
Sbjct: 106 FKVLHDGFWQKINVKQPEHRINGRHGGNSHEFL-RSPWIKHYKPLVKTQIPVTDEPENQV 165

Query: 127 I-GSRGRNSLSLGAANNSGPIRVSDSDLSQQYISSNKEVSDQNFVDEVIVVEKGS 175
           +  S G+  +    + +S     S S    Q      EVSDQNFV+E I  E GS
Sbjct: 166 VSSSNGKKGICSSGSASSLKQLSSHSRDHDQISVGEAEVSDQNFVNEGIKGENGS 211

[Close]

BLAST of Chy7G129620 vs. ExPASy Swiss-Prot
Match: Q8L983 (Cold-regulated protein 28 OS=Arabidopsis thaliana OX=3702 GN=COR28 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.8e-04
Identity = 48/190 (25.26%), Postives = 80/190 (42.11%), Query Frame = 0


Query: 9   WTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQ-AASHGHSQFGQF 68
           WT+EKH+ +L+ +E+SFV Q++                 T+ LS+++   S+ H    QF
Sbjct: 58  WTNEKHNSYLDYLESSFVRQLYSL-----------LGGGTQRLSRTRDVQSNSHKSADQF 117

Query: 69  KVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVACKSQAIGSRGRN 128
            VL+ G W+ +NF   +S     +E++        H                      RN
Sbjct: 118 TVLQNGCWQKVNFGKKQSCLETSSEFR-------FH----------------------RN 177

Query: 129 SLSLGAANNSGPIRVS---DSDLSQQYISSNKEVSDQNFVDEVIVVEKGSIDCNAERANA 188
           SL     N++G   +      D+     + + E S QNF +E    EKG +    ER   
Sbjct: 178 SLRNKPENSNGNYTMGTTVQGDVLCHDETKHSEASGQNFREEEEEEEKGEVSKKREREAN 207

Query: 189 SETNALINDQ 195
           ++ ++L  DQ
Sbjct: 238 NDDSSLKEDQ 207

[Close]

BLAST of Chy7G129620 vs. ExPASy TrEMBL
Match: A0A0A0L0A2 (Polyketide_cyc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G639810 PE=3 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.4e-100
Identity = 188/194 (96.91%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQAASHG 60
           MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQ+ASHG
Sbjct: 122 MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHG 181

Query: 61  HSQFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVACKSQA 120
           HSQFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNV CKSQA
Sbjct: 182 HSQFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQA 241

Query: 121 IGSRGRNSLSLGAANNSGPIRVSDSDLSQQYISSNKEVSDQNFVDEVIVVEKGSIDCNAE 180
           IGSRGRNSLSLGAANNSGPIR SDSDLSQQYIS+NKEVSDQNFVDEVI VEKGSIDCNA+
Sbjct: 242 IGSRGRNSLSLGAANNSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNAK 301

Query: 181 RANASETNALINDQ 195
           RANASETNALINDQ
Sbjct: 302 RANASETNALINDQ 315

[Close]

BLAST of Chy7G129620 vs. ExPASy TrEMBL
Match: A0A1S3BU49 (uncharacterized protein LOC103493542 OS=Cucumis melo OX=3656 GN=LOC103493542 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.8e-88
Identity = 168/179 (93.85%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 1   MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQAASHG 60
           MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCP+KDNSSRTKLLSKSQ+ASH 
Sbjct: 46  MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPSKDNSSRTKLLSKSQSASHV 105

Query: 61  HSQFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVACKSQA 120
           HS FGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHF+AARKNKNVACKSQA
Sbjct: 106 HSHFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFKAARKNKNVACKSQA 165

Query: 121 IGSRGRNSLSLGAANNSGPIRVSDSDLSQQYISSNKEVSDQNFVDEVIVVEKGSIDCNA 180
           IGSRGRNSLSL AANNSGPIR S+SDLSQQYISSNKEVSDQNFVDEV+ VEKGS DCNA
Sbjct: 166 IGSRGRNSLSLEAANNSGPIRASNSDLSQQYISSNKEVSDQNFVDEVVEVEKGSRDCNA 224

[Close]

BLAST of Chy7G129620 vs. ExPASy TrEMBL
Match: A0A5D3D9F8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003390 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.8e-88
Identity = 168/179 (93.85%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 1   MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQAASHG 60
           MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCP+KDNSSRTKLLSKSQ+ASH 
Sbjct: 1   MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPSKDNSSRTKLLSKSQSASHV 60

Query: 61  HSQFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVACKSQA 120
           HS FGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHF+AARKNKNVACKSQA
Sbjct: 61  HSHFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFKAARKNKNVACKSQA 120

Query: 121 IGSRGRNSLSLGAANNSGPIRVSDSDLSQQYISSNKEVSDQNFVDEVIVVEKGSIDCNA 180
           IGSRGRNSLSL AANNSGPIR S+SDLSQQYISSNKEVSDQNFVDEV+ VEKGS DCNA
Sbjct: 121 IGSRGRNSLSLEAANNSGPIRASNSDLSQQYISSNKEVSDQNFVDEVVEVEKGSRDCNA 179

[Close]

BLAST of Chy7G129620 vs. ExPASy TrEMBL
Match: A0A6J1IM11 (uncharacterized protein LOC111476815 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111476815 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.6e-78
Identity = 154/194 (79.38%), Postives = 164/194 (84.54%), Query Frame = 0


Query: 1   MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQAASHG 60
           MTDSVPSDWTDEKHHLFLESME SFVSQMFDS HSVGSCP K+NSS TKL  +SQ+ASH 
Sbjct: 46  MTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQSASHV 105

Query: 61  HSQFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVACKSQA 120
           H+ FGQFKVLRRGSWKNINFE TESRSN LN++QALS NPWIHHFRA RKNKNVACKSQA
Sbjct: 106 HAHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQA 165

Query: 121 IGSRGRNSLSLGAANNSGPIRVSDSDLSQQYISSNKEVSDQNFVDEVIVVEKGSIDCNAE 180
           IGS GRN   LGAANNS P+R   SDLS QYISSN+EVSDQNFVDE   V  GS DCNA+
Sbjct: 166 IGSGGRNLFPLGAANNSEPLRACGSDLSLQYISSNEEVSDQNFVDEDREVGNGSSDCNAK 225

Query: 181 RANASETNALINDQ 195
           R N  ETNALIN+Q
Sbjct: 226 RVNTPETNALINEQ 239

[Close]

BLAST of Chy7G129620 vs. ExPASy TrEMBL
Match: A0A6J1IFL9 (uncharacterized protein LOC111476815 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111476815 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.6e-78
Identity = 154/194 (79.38%), Postives = 164/194 (84.54%), Query Frame = 0


Query: 1   MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQAASHG 60
           MTDSVPSDWTDEKHHLFLESME SFVSQMFDS HSVGSCP K+NSS TKL  +SQ+ASH 
Sbjct: 46  MTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQSASHV 105

Query: 61  HSQFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVACKSQA 120
           H+ FGQFKVLRRGSWKNINFE TESRSN LN++QALS NPWIHHFRA RKNKNVACKSQA
Sbjct: 106 HAHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQA 165

Query: 121 IGSRGRNSLSLGAANNSGPIRVSDSDLSQQYISSNKEVSDQNFVDEVIVVEKGSIDCNAE 180
           IGS GRN   LGAANNS P+R   SDLS QYISSN+EVSDQNFVDE   V  GS DCNA+
Sbjct: 166 IGSGGRNLFPLGAANNSEPLRACGSDLSLQYISSNEEVSDQNFVDEDREVGNGSSDCNAK 225

Query: 181 RANASETNALINDQ 195
           R N  ETNALIN+Q
Sbjct: 226 RVNTPETNALINEQ 239

[Close]

BLAST of Chy7G129620 vs. NCBI nr
Match: KAE8649861.1 (hypothetical protein Csa_012756 [Cucumis sativus])

HSP 1 Score: 376 bits (966), Expect = 2.86e-130
Identity = 188/194 (96.91%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQAASHG 60
           MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQ+ASHG
Sbjct: 46  MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHG 105

Query: 61  HSQFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVACKSQA 120
           HSQFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNV CKSQA
Sbjct: 106 HSQFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQA 165

Query: 121 IGSRGRNSLSLGAANNSGPIRVSDSDLSQQYISSNKEVSDQNFVDEVIVVEKGSIDCNAE 180
           IGSRGRNSLSLGAANNSGPIR SDSDLSQQYIS+NKEVSDQNFVDEVI VEKGSIDCNA+
Sbjct: 166 IGSRGRNSLSLGAANNSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNAK 225

Query: 181 RANASETNALINDQ 194
           RANASETNALINDQ
Sbjct: 226 RANASETNALINDQ 239

[Close]

BLAST of Chy7G129620 vs. NCBI nr
Match: XP_011654107.2 (cold-regulated protein 27 [Cucumis sativus])

HSP 1 Score: 376 bits (966), Expect = 1.84e-129
Identity = 188/194 (96.91%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQAASHG 60
           MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQ+ASHG
Sbjct: 100 MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHG 159

Query: 61  HSQFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVACKSQA 120
           HSQFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNV CKSQA
Sbjct: 160 HSQFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQA 219

Query: 121 IGSRGRNSLSLGAANNSGPIRVSDSDLSQQYISSNKEVSDQNFVDEVIVVEKGSIDCNAE 180
           IGSRGRNSLSLGAANNSGPIR SDSDLSQQYIS+NKEVSDQNFVDEVI VEKGSIDCNA+
Sbjct: 220 IGSRGRNSLSLGAANNSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNAK 279

Query: 181 RANASETNALINDQ 194
           RANASETNALINDQ
Sbjct: 280 RANASETNALINDQ 293

[Close]

BLAST of Chy7G129620 vs. NCBI nr
Match: KAA0064385.1 (uncharacterized protein E6C27_scaffold255G00860 [Cucumis melo var. makuwa] >TYK20202.1 uncharacterized protein E5676_scaffold134G003390 [Cucumis melo var. makuwa])

HSP 1 Score: 335 bits (860), Expect = 4.24e-115
Identity = 168/179 (93.85%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 1   MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQAASHG 60
           MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCP+KDNSSRTKLLSKSQ+ASH 
Sbjct: 1   MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPSKDNSSRTKLLSKSQSASHV 60

Query: 61  HSQFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVACKSQA 120
           HS FGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHF+AARKNKNVACKSQA
Sbjct: 61  HSHFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFKAARKNKNVACKSQA 120

Query: 121 IGSRGRNSLSLGAANNSGPIRVSDSDLSQQYISSNKEVSDQNFVDEVIVVEKGSIDCNA 179
           IGSRGRNSLSL AANNSGPIR S+SDLSQQYISSNKEVSDQNFVDEV+ VEKGS DCNA
Sbjct: 121 IGSRGRNSLSLEAANNSGPIRASNSDLSQQYISSNKEVSDQNFVDEVVEVEKGSRDCNA 179

[Close]

BLAST of Chy7G129620 vs. NCBI nr
Match: XP_008452552.1 (PREDICTED: uncharacterized protein LOC103493542 [Cucumis melo] >XP_008452553.1 PREDICTED: uncharacterized protein LOC103493542 [Cucumis melo] >XP_008452555.1 PREDICTED: uncharacterized protein LOC103493542 [Cucumis melo])

HSP 1 Score: 335 bits (860), Expect = 2.05e-114
Identity = 168/179 (93.85%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 1   MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQAASHG 60
           MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCP+KDNSSRTKLLSKSQ+ASH 
Sbjct: 46  MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPSKDNSSRTKLLSKSQSASHV 105

Query: 61  HSQFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVACKSQA 120
           HS FGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHF+AARKNKNVACKSQA
Sbjct: 106 HSHFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFKAARKNKNVACKSQA 165

Query: 121 IGSRGRNSLSLGAANNSGPIRVSDSDLSQQYISSNKEVSDQNFVDEVIVVEKGSIDCNA 179
           IGSRGRNSLSL AANNSGPIR S+SDLSQQYISSNKEVSDQNFVDEV+ VEKGS DCNA
Sbjct: 166 IGSRGRNSLSLEAANNSGPIRASNSDLSQQYISSNKEVSDQNFVDEVVEVEKGSRDCNA 224

[Close]

BLAST of Chy7G129620 vs. NCBI nr
Match: XP_038896201.1 (cold-regulated protein 27 isoform X4 [Benincasa hispida])

HSP 1 Score: 328 bits (840), Expect = 1.45e-111
Identity = 165/194 (85.05%), Postives = 175/194 (90.21%), Query Frame = 0


Query: 1   MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQAASHG 60
           MTDSVPSDWTDEKHHLFLESMEASFVSQMFDS HSVGSCP+K+NSSR KLL +SQ+ASH 
Sbjct: 1   MTDSVPSDWTDEKHHLFLESMEASFVSQMFDSVHSVGSCPSKENSSRAKLLGQSQSASHV 60

Query: 61  HSQFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVACKSQA 120
           HS FGQFKVLRRGSWKNINFEPTESRSN LN+YQALSHNPWIHHFRAARKNKNVACKSQ+
Sbjct: 61  HSHFGQFKVLRRGSWKNINFEPTESRSNLLNDYQALSHNPWIHHFRAARKNKNVACKSQS 120

Query: 121 IGSRGRNSLSLGAANNSGPIRVSDSDLSQQYISSNKEVSDQNFVDEVIVVEKGSIDCNAE 180
           IGSRGRNSL  GAANNSG +R SDSDLSQQ+ISSNKEVSDQNFVDE    EKGS DCNA+
Sbjct: 121 IGSRGRNSLPFGAANNSGSMRASDSDLSQQFISSNKEVSDQNFVDEE--AEKGSSDCNAK 180

Query: 181 RANASETNALINDQ 194
           R    +TNALINDQ
Sbjct: 181 RVKTPQTNALINDQ 192

[Close]

BLAST of Chy7G129620 vs. TAIR 10
Match: AT5G42900.3 (cold regulated gene 27 )

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-13
Identity = 58/174 (33.33%), Postives = 88/174 (50.57%), Query Frame = 0


Query: 7   SDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQAASHGHSQFGQ 66
           ++WT+EKH L+L+SMEASFV Q++   +S+G+    +N S +      +  S       Q
Sbjct: 46  TEWTNEKHSLYLKSMEASFVDQLY---NSLGALGKNENVSESTRFGSGRKPSQ-----EQ 105

Query: 67  FKVLRRGSWKNINFEPTESRSNFL---NEYQALSHNPWIHHFRAARKNKNVAC---KSQA 126
           FKVL  G W+ IN +  E R N     N ++ L  +PWI H++   K +       ++Q 
Sbjct: 106 FKVLHDGFWQKINVKQPEHRINGRHGGNSHEFL-RSPWIKHYKPLVKTQIPVTDEPENQV 165

Query: 127 IGSRGRNSLSLGAANNSGPIRVSDSDLSQQYISSNKEVSDQNFVDEVIVVEKGS 175
           + S         + + S   ++S        IS  +EVSDQNFV+E I  E GS
Sbjct: 166 VSSSNGKKGICSSGSASSLKQLSSHSRDHDQISVGEEVSDQNFVNEGIKGENGS 210

[Close]

BLAST of Chy7G129620 vs. TAIR 10
Match: AT5G42900.1 (cold regulated gene 27 )

HSP 1 Score: 69.7 bits (169), Expect = 3.2e-12
Identity = 59/175 (33.71%), Postives = 88/175 (50.29%), Query Frame = 0


Query: 7   SDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQAASHGHSQFGQ 66
           ++WT+EKH L+L+SMEASFV Q++   +S+G+    +N S +      +  S       Q
Sbjct: 46  TEWTNEKHSLYLKSMEASFVDQLY---NSLGALGKNENVSESTRFGSGRKPSQ-----EQ 105

Query: 67  FKVLRRGSWKNINFEPTESRSNFL---NEYQALSHNPWIHHFRAARKNKNVAC---KSQA 126
           FKVL  G W+ IN +  E R N     N ++ L  +PWI H++   K +       ++Q 
Sbjct: 106 FKVLHDGFWQKINVKQPEHRINGRHGGNSHEFL-RSPWIKHYKPLVKTQIPVTDEPENQV 165

Query: 127 I-GSRGRNSLSLGAANNSGPIRVSDSDLSQQYISSNKEVSDQNFVDEVIVVEKGS 175
           +  S G+  +    + +S     S S    Q      EVSDQNFV+E I  E GS
Sbjct: 166 VSSSNGKKGICSSGSASSLKQLSSHSRDHDQISVGEAEVSDQNFVNEGIKGENGS 211

[Close]

BLAST of Chy7G129620 vs. TAIR 10
Match: AT5G42900.2 (cold regulated gene 27 )

HSP 1 Score: 69.7 bits (169), Expect = 3.2e-12
Identity = 59/175 (33.71%), Postives = 88/175 (50.29%), Query Frame = 0


Query: 7   SDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQAASHGHSQFGQ 66
           ++WT+EKH L+L+SMEASFV Q++   +S+G+    +N S +      +  S       Q
Sbjct: 46  TEWTNEKHSLYLKSMEASFVDQLY---NSLGALGKNENVSESTRFGSGRKPSQ-----EQ 105

Query: 67  FKVLRRGSWKNINFEPTESRSNFL---NEYQALSHNPWIHHFRAARKNKNVAC---KSQA 126
           FKVL  G W+ IN +  E R N     N ++ L  +PWI H++   K +       ++Q 
Sbjct: 106 FKVLHDGFWQKINVKQPEHRINGRHGGNSHEFL-RSPWIKHYKPLVKTQIPVTDEPENQV 165

Query: 127 I-GSRGRNSLSLGAANNSGPIRVSDSDLSQQYISSNKEVSDQNFVDEVIVVEKGS 175
           +  S G+  +    + +S     S S    Q      EVSDQNFV+E I  E GS
Sbjct: 166 VSSSNGKKGICSSGSASSLKQLSSHSRDHDQISVGEAEVSDQNFVNEGIKGENGS 211

[Close]

BLAST of Chy7G129620 vs. TAIR 10
Match: AT4G33980.1 (BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 1.3e-05
Identity = 48/190 (25.26%), Postives = 80/190 (42.11%), Query Frame = 0


Query: 9   WTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQ-AASHGHSQFGQF 68
           WT+EKH+ +L+ +E+SFV Q++                 T+ LS+++   S+ H    QF
Sbjct: 58  WTNEKHNSYLDYLESSFVRQLYSL-----------LGGGTQRLSRTRDVQSNSHKSADQF 117

Query: 69  KVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVACKSQAIGSRGRN 128
            VL+ G W+ +NF   +S     +E++        H                      RN
Sbjct: 118 TVLQNGCWQKVNFGKKQSCLETSSEFR-------FH----------------------RN 177

Query: 129 SLSLGAANNSGPIRVS---DSDLSQQYISSNKEVSDQNFVDEVIVVEKGSIDCNAERANA 188
           SL     N++G   +      D+     + + E S QNF +E    EKG +    ER   
Sbjct: 178 SLRNKPENSNGNYTMGTTVQGDVLCHDETKHSEASGQNFREEEEEEEKGEVSKKREREAN 207

Query: 189 SETNALINDQ 195
           ++ ++L  DQ
Sbjct: 238 NDDSSLKEDQ 207

[Close]

BLAST of Chy7G129620 vs. TAIR 10
Match: AT4G33980.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.3). )

HSP 1 Score: 47.8 bits (112), Expect = 1.3e-05
Identity = 48/190 (25.26%), Postives = 80/190 (42.11%), Query Frame = 0


Query: 9   WTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQ-AASHGHSQFGQF 68
           WT+EKH+ +L+ +E+SFV Q++                 T+ LS+++   S+ H    QF
Sbjct: 58  WTNEKHNSYLDYLESSFVRQLYSL-----------LGGGTQRLSRTRDVQSNSHKSADQF 117

Query: 69  KVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVACKSQAIGSRGRN 128
            VL+ G W+ +NF   +S     +E++        H                      RN
Sbjct: 118 TVLQNGCWQKVNFGKKQSCLETSSEFR-------FH----------------------RN 177

Query: 129 SLSLGAANNSGPIRVS---DSDLSQQYISSNKEVSDQNFVDEVIVVEKGSIDCNAERANA 188
           SL     N++G   +      D+     + + E S QNF +E    EKG +    ER   
Sbjct: 178 SLRNKPENSNGNYTMGTTVQGDVLCHDETKHSEASGQNFREEEEEEEKGEVSKKREREAN 207

Query: 189 SETNALINDQ 195
           ++ ++L  DQ
Sbjct: 238 NDDSSLKEDQ 207

The following BLAST results are available for this feature:

BLAST of Chy7G129620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L8T7	4.5e-11	33.71	Cold-regulated protein 27 OS=Arabidopsis thaliana OX=3702 GN=COR27 PE=1 SV=1	[more]
Q8L983	1.8e-04	25.26	Cold-regulated protein 28 OS=Arabidopsis thaliana OX=3702 GN=COR28 PE=1 SV=1	[more]

BLAST of Chy7G129620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0A2	1.4e-100	96.91	Polyketide_cyc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G639...	[more]
A0A1S3BU49	2.8e-88	93.85	uncharacterized protein LOC103493542 OS=Cucumis melo OX=3656 GN=LOC103493542 PE=...	[more]
A0A5D3D9F8	2.8e-88	93.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1IM11	2.6e-78	79.38	uncharacterized protein LOC111476815 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IFL9	2.6e-78	79.38	uncharacterized protein LOC111476815 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Chy7G129620 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649861.1	2.86e-130	96.91	hypothetical protein Csa_012756 [Cucumis sativus]	[more]
XP_011654107.2	1.84e-129	96.91	cold-regulated protein 27 [Cucumis sativus]	[more]
KAA0064385.1	4.24e-115	93.85	uncharacterized protein E6C27_scaffold255G00860 [Cucumis melo var. makuwa] >TYK2...	[more]
XP_008452552.1	2.05e-114	93.85	PREDICTED: uncharacterized protein LOC103493542 [Cucumis melo] >XP_008452553.1 P...	[more]
XP_038896201.1	1.45e-111	85.05	cold-regulated protein 27 isoform X4 [Benincasa hispida]	[more]

BLAST of Chy7G129620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42900.3	1.7e-13	33.33	cold regulated gene 27	[more]
AT5G42900.1	3.2e-12	33.71	cold regulated gene 27	[more]
AT5G42900.2	3.2e-12	33.71	cold regulated gene 27	[more]
AT4G33980.1	1.3e-05	25.26	BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G429...	[more]
AT4G33980.2	1.3e-05	25.26	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOC...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..59
None	No IPR available	PANTHER	PTHR33676:SF3	COLD REGULATED PROTEIN 27	coord: 3..195
IPR044678	Cold-regulated protein 27/28	PANTHER	PTHR33676	COLD REGULATED PROTEIN 27	coord: 3..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy7G129620.1	Chy7G129620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042752	regulation of circadian rhythm
biological_process	GO:0009409	response to cold