Chy7G128840 (gene) Cucumber (hystrix) v1

Overview


Name	Chy7G128840
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	30S ribosomal protein S20, chloroplastic
Location	chrH07: 486035 .. 488716 (+)
RNA-Seq Expression	Chy7G128840
Synteny	Chy7G128840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAGCTGCAATTACTTGCTTCGCTCTTTCTTCGAAGTTCGGAAGTCTTTCCCTTAATGGGTTTTCCTCCTCTATTCCCGCTGCCCCATCTTCTTCCACCCTCAGGTCTCTCAGTTTCTCCTCCAACATTTCACTTTCCGCCTTCTCCAATGGTGAGTTTTTATGGGGTTCCTTTGTTTTTCCATTTTATAAACTTCTGAATTGCTGCTGGACTTAATTTTGTCCGTTTTTGTAAAGGGTGTCTGTCGATGAGGAAAACTGAGAGGCTGCATCGTTACTCTGTGGTTTGCGAGGCAGCTCCTAAGTCCAAAGTTGATTCTGCTGCCAAGAGGGCTCGGCAGGCTGAGAAAAGACGTATTTACAATAAAGCCCGAAAGTCTGAAATTAAAACCAGGATGAAGAAGGTACTTAATTTTTACCCCTTTGTATGCGCATTTAAATATATTGAAATCTATAGGAATGATATACTCTAGAATTCGTTTTATCTCAGAGTATTGTATATTTCTTTTATAAGAAAGAATTTTTTATTGATGGAAGGAAATTACAAATGAAATGAAAGGAGATTAGTATAGCTAATAGTGGTGAAATAAGGGAGTGCATTTACACCAAGTCTCTACCATGTTAACTATAGCATAAAAAATTATAATGAGAAAGTTATTTGTCTTGGAAGACTCTACTATCCCGTACTTGCCAAATAGATGGTATTGAAAGTAGAGACATAGAACAAACACAAATTTACATGGAAATCCTAGTATAGGGAGAAAAACCACGATACTGATATTTCTTATTATTTTCTTATGATAATAAAGGTACCCTTGTATTTATAGGCAACACGAGCCTTATTAAAATAATAAAAAATTAGGACAAAGTAAGTCTTAACTACTCTTGGGCTTTCAACATGATTTAAGCCTACCATTTCTAACTGAGGGGAATAAATCATACAGAAGGGAGCTATTTGGAAAAACACCAGTGGGTTCTAGCTTCCAAAGGCGCCCGTCAGGTCTGTTGTGAAAGGAAACAGCTGCTAGAATGTGTAAGAGAGTTCCATATTCTTCAACTTCGGCCTCTCTCTGATTCCTTTTCAATATTAGGCTCCAACCCAAGGTTTGTGTTCCAAAATTTAGTATTAGCCCAATCTTGTTGTGAGAAAAGGCAAGAATGAGGGGGATTTGTTATAAAGGGGTTTGTATGGAATGTATTTATGGGTGATTTTCATTTTAGGGTGGTATGTGCCTAATTTGTAAGTACCTTTAGATAAACTGAGCTATATCAAGACTCAAGGGGTTAAGTACTCCTTTATGTTCCTTATAAAGTGTGCAAGTCGACGGTTGTTACTTAAGCTGTTGAAGATAAATGTGTGAAATGATTATCCTCATCTTGACTTGTCCTTAATGGGGACTGGATGAAATTCGTAAAATCAAGAGATGGAAAGTAGATGCTTACAGTTTTGTATTCAGTACCAATGGAAAAATGGTTATATATATATACTCGTGCATAATATGGTTTTGTTTGATAAGGTCAATGGTAGCTAGATGGTTTGGATTCTTGTTGTGAAAATCTGATCAGCAGAAAATCTTATTTTTTCAGAAATTATTATAATTACTGTTCACTGGGAAAAAATGGAGACTACAGTGACTAGTACAGAAATTTTTTTATGAATTTTGCTTCAGAAATCTTGTAATCAAGACTGATTTTCTCATTTATAAAAGTTTTCATTTAAGTTATTAAATTGGACTTTTGATGTATAACAGAAAAATTAAACTATTAAGATCCCAACTTGATGGAGAATTGTAGAAGGACTAGAAAGAAAAATCTAGTAAATGGTAAAGTTGAATCCTTTCTGATTGGTCAGAGACAGGTTCTTTAGGAAGTTTTCATGTGGGTAATGAGTTTATGACTGAATTTTGTATAATTTCTTTTGGATCTTTTTCCAGCCTCTCTTCAAGTCTTGAACTTATTCAAGGCCATTAAGGTGTTTGAATAGCCCTTTGGCTTAGCTGTTGATCTTTTTGAATCTTTGGTTGCGACCATCAACTGTTCTTTGCATGAGCGATGCAATATGATTAAACATCTTTTCCCGTTCTAATTATAAGTGGCCTTTGTGTTATCCTGTGGATCTTAGAGTTAATCCTAAGCTGTAAAGTCGTGTGTGACCAATGACTAAGAGGATCTCGTTTCTTCTTTTCAGTGCCACCAGGGGAGTGCGTAATTCTGTTTGCGAAGCTTTCTTTGGTCATCCTTCCAAAAAATCATAAGCTTTATGGCTTCTTGCTTTAGAGTTTTCTTATATCTGCTAAAGGACAGGACTAAAGCATAATCTTCATATGGTTTAATAAAACATCATCTACATACTTGCTTTTGGATATTGTGAAGAAAAAGATAAAATTTTCTGTTTCTTTCCAGAACTAATCAGCACAATAATGACCTCTCCCTCTTACATTTCCAGGTTCTGGAAGCTTTAGATGGTCTCAAGAAGAAAGCTGAAGCACAATCAGAGGAAGTCATTCCAATTGAGACTCTCATTGCAGAAGCATATTCGGTGATCGACAAAGCCGTGAGAGCAGGCACGTTGCACCGAAACACTGCAGCACGACGAAAATCTCGGCTCGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCGGATTCTCCAGCGGCAGCGTGA

mRNA sequence

ATGGCGGCAGCTGCAATTACTTGCTTCGCTCTTTCTTCGAAGTTCGGAAGTCTTTCCCTTAATGGGTTTTCCTCCTCTATTCCCGCTGCCCCATCTTCTTCCACCCTCAGGTCTCTCAGTTTCTCCTCCAACATTTCACTTTCCGCCTTCTCCAATGGGTGTCTGTCGATGAGGAAAACTGAGAGGCTGCATCGTTACTCTGTGGTTTGCGAGGCAGCTCCTAAGTCCAAAGTTGATTCTGCTGCCAAGAGGGCTCGGCAGGCTGAGAAAAGACGTATTTACAATAAAGCCCGAAAGTCTGAAATTAAAACCAGGATGAAGAAGGTTCTGGAAGCTTTAGATGGTCTCAAGAAGAAAGCTGAAGCACAATCAGAGGAAGTCATTCCAATTGAGACTCTCATTGCAGAAGCATATTCGGTGATCGACAAAGCCGTGAGAGCAGGCACGTTGCACCGAAACACTGCAGCACGACGAAAATCTCGGCTCGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCGGATTCTCCAGCGGCAGCGTGA

Coding sequence (CDS)

ATGGCGGCAGCTGCAATTACTTGCTTCGCTCTTTCTTCGAAGTTCGGAAGTCTTTCCCTTAATGGGTTTTCCTCCTCTATTCCCGCTGCCCCATCTTCTTCCACCCTCAGGTCTCTCAGTTTCTCCTCCAACATTTCACTTTCCGCCTTCTCCAATGGGTGTCTGTCGATGAGGAAAACTGAGAGGCTGCATCGTTACTCTGTGGTTTGCGAGGCAGCTCCTAAGTCCAAAGTTGATTCTGCTGCCAAGAGGGCTCGGCAGGCTGAGAAAAGACGTATTTACAATAAAGCCCGAAAGTCTGAAATTAAAACCAGGATGAAGAAGGTTCTGGAAGCTTTAGATGGTCTCAAGAAGAAAGCTGAAGCACAATCAGAGGAAGTCATTCCAATTGAGACTCTCATTGCAGAAGCATATTCGGTGATCGACAAAGCCGTGAGAGCAGGCACGTTGCACCGAAACACTGCAGCACGACGAAAATCTCGGCTCGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCGGATTCTCCAGCGGCAGCGTGA

Protein sequence

MAAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKTERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAEAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDSPAAA*

Homology

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BLAST of Chy7G128840 vs. ExPASy Swiss-Prot
Match: P82130 (30S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 PE=1 SV=2)

HSP 1 Score: 183.0 bits (463), Expect = 3.2e-45
Identity = 109/178 (61.24%), Postives = 132/178 (74.16%), Query Frame = 0


Query: 1   MAAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MA  +  C ++SSK  +LS +  S+  P    +S+L+ L+FS+N+S   FS GC S+   
Sbjct: 6   MACVSSQCLSISSKLHNLSFS--STQFP----NSSLKPLTFSANLSQPLFSQGCSSLGSF 65

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           +R   +SVVCE A   K DSAAKR RQAE RR+ NKARKSE+KTRM+KV EALD LKKK+
Sbjct: 66  QR-RGFSVVCEVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKS 125

Query: 121 EAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 179
            A +EE++PI+ LIAEAYS IDKAV  GTLHRNTAARRKSRLAR KK VEIHHGWYTP
Sbjct: 126 GASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTP 176

[Close]

BLAST of Chy7G128840 vs. ExPASy Swiss-Prot
Match: Q9ASV6 (30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS20 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.1e-45
Identity = 114/187 (60.96%), Postives = 139/187 (74.33%), Query Frame = 0


Query: 7   TCFALSSKFGSLSLNGFSSSIPAAP------SSSTL-RSLSFSSNIS-LSAFSNGCLSMR 66
           +C  L S+F  LSL G S S P++       +S+TL  SLSFS ++S   AFS G L ++
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWVQ 69

Query: 67  KTERLHRYSVVCE-AAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLK 126
           K     R  +VCE AAP  K DSAAKRARQAEKRR+YNK++KSE +TRMKKVLEAL+GLK
Sbjct: 70  KP---MRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLK 129

Query: 127 KKAEAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYT 185
           KK +AQ++E++ +E LI EAYS IDKAV+   LH+NT ARRKSRLARRKKAVEIHHGWY 
Sbjct: 130 KKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYV 189

[Close]

BLAST of Chy7G128840 vs. ExPASy Swiss-Prot
Match: Q8YWL3 (30S ribosomal protein S20 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rpsT PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-09
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAEAQSEEVIPIETLIAEAYS 139
           SA KRA+ AE+ R+ NK  KS +KT MK  L A+         +S++    +T +A AYS
Sbjct: 6   SALKRAQIAERNRVRNKTYKSSVKTLMKNYLSAVQAYAANPTPESKQ--EAQTRLAAAYS 65

Query: 140 VIDKAVRAGTLHRNTAARRKSRLARRKKAVE 171
            IDKAV+ G LH N  AR+KSRLA + K +E
Sbjct: 66  RIDKAVKRGILHPNNGARKKSRLASKLKPIE 94

[Close]

BLAST of Chy7G128840 vs. ExPASy Swiss-Prot
Match: Q3M5D2 (30S ribosomal protein S20 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rpsT PE=3 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-09
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAEAQSEEVIPIETLIAEAYS 139
           SA KRA+ AE+ R+ NK  KS +KT MK  L A+         +S++    +T +A AYS
Sbjct: 7   SALKRAQIAERNRVRNKTYKSSVKTLMKNYLSAVQAYAANPTPESKQ--EAQTRLAAAYS 66

Query: 140 VIDKAVRAGTLHRNTAARRKSRLARRKKAVE 171
            IDKAV+ G LH N  AR+KSRLA + K +E
Sbjct: 67  RIDKAVKRGILHPNNGARKKSRLASKLKPIE 95

[Close]

BLAST of Chy7G128840 vs. ExPASy Swiss-Prot
Match: A7HJB0 (30S ribosomal protein S20 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rpsT PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-08
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAEAQSEEVIPIETLIAEAYS 139
           SA KR R +EKRR+ NKA K+ +K ++K VL A+        AQ +    I  L  +A S
Sbjct: 6   SAEKRVRVSEKRRVLNKAYKTSMKNKIKAVLAAI--------AQKKSAEEIMELFRKAQS 65

Query: 140 VIDKAVRAGTLHRNTAARRKSRLARRKKA 169
            IDKA ++G +H+N A+RRKSRLA + KA
Sbjct: 66  AIDKAAKSGAIHKNQASRRKSRLAVKVKA 86

[Close]

BLAST of Chy7G128840 vs. ExPASy TrEMBL
Match: A0A0A0KZK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G630000 PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.7e-86
Identity = 181/184 (98.37%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MAAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAAITCF+LSSKFG+LSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT
Sbjct: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA
Sbjct: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEV+PIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]

BLAST of Chy7G128840 vs. ExPASy TrEMBL
Match: A0A5A7VMD2 (30S ribosomal protein S20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001620 PE=3 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.2e-84
Identity = 176/184 (95.65%), Postives = 182/184 (98.91%), Query Frame = 0


Query: 1   MAAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAA+TCFALSSKFG+LSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           ER+HRYSVVCEAAPK+K DSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEV+PIE L+AEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]

BLAST of Chy7G128840 vs. ExPASy TrEMBL
Match: A0A1S3CJU9 (30S ribosomal protein S20, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501779 PE=3 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.2e-84
Identity = 176/184 (95.65%), Postives = 182/184 (98.91%), Query Frame = 0


Query: 1   MAAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAA+TCFALSSKFG+LSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           ER+HRYSVVCEAAPK+K DSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEV+PIE L+AEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]

BLAST of Chy7G128840 vs. ExPASy TrEMBL
Match: A0A6J1CG14 (30S ribosomal protein S20, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010468 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 5.0e-70
Identity = 154/184 (83.70%), Postives = 165/184 (89.67%), Query Frame = 0


Query: 1   MAAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAAITCF++SSKF +LSLN  SSS PA+ SSSTL+SL+FSSN+S  AFSNGCLSM + 
Sbjct: 1   MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNGCLSMSEA 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           +R  RYSVVCEAAPK KVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALD LKKK 
Sbjct: 61  QRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDDLKKKP 120

Query: 121 EAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEV+ IE LIAEAYSVIDKAV+ GTLHRNTAARRKSRLARRKKAVEIHHGWY P S
Sbjct: 121 EAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPAS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]

BLAST of Chy7G128840 vs. ExPASy TrEMBL
Match: A0A6J1IG57 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111476939 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.6e-69
Identity = 152/183 (83.06%), Postives = 165/183 (90.16%), Query Frame = 0


Query: 2   AAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKTE 61
           A A I+CFAL SKF +LSLN  SSS+P +PSSSTLRSLSFSSN+S+SAFSNGCLS+ K +
Sbjct: 3   ATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQ 62

Query: 62  RLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAE 121
           R  RYSVVCEAAPK K DSAAKRARQAEKRR+YNKARKSEIKTRMKKV+EALD LKKK E
Sbjct: 63  RPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPE 122

Query: 122 AQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDSP 181
           AQSEEV+PIE LIAEA+SVIDKAV+ GTLHRNTAARRKSRLARRKKAVEIHHGWYTP SP
Sbjct: 123 AQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPASP 182

Query: 182 AAA 185
           AAA
Sbjct: 183 AAA 184

[Close]

BLAST of Chy7G128840 vs. NCBI nr
Match: XP_004146049.1 (30S ribosomal protein S20, chloroplastic [Cucumis sativus] >KGN55105.1 hypothetical protein Csa_012631 [Cucumis sativus])

HSP 1 Score: 330 bits (847), Expect = 1.57e-113
Identity = 181/184 (98.37%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MAAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAAITCF+LSSKFG+LSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT
Sbjct: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA
Sbjct: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEV+PIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 184
           PAAA
Sbjct: 181 PAAA 184

[Close]

BLAST of Chy7G128840 vs. NCBI nr
Match: XP_008463697.1 (PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis melo] >KAA0066811.1 30S ribosomal protein S20 [Cucumis melo var. makuwa] >TYK27958.1 30S ribosomal protein S20 [Cucumis melo var. makuwa])

HSP 1 Score: 324 bits (831), Expect = 4.33e-111
Identity = 176/184 (95.65%), Postives = 182/184 (98.91%), Query Frame = 0


Query: 1   MAAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAA+TCFALSSKFG+LSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           ER+HRYSVVCEAAPK+K DSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEV+PIE L+AEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 184
           PAAA
Sbjct: 181 PAAA 184

[Close]

BLAST of Chy7G128840 vs. NCBI nr
Match: XP_038899721.1 (30S ribosomal protein S20, chloroplastic [Benincasa hispida])

HSP 1 Score: 284 bits (726), Expect = 4.32e-95
Identity = 156/184 (84.78%), Postives = 167/184 (90.76%), Query Frame = 0


Query: 1   MAAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAA A++CF+L SKF +LSLN  SS IPA+PSS TLRSLSFSSN S+SAFSNGCL+M K 
Sbjct: 1   MAATAVSCFSLPSKFRNLSLNASSSCIPASPSSLTLRSLSFSSNTSVSAFSNGCLTMSKA 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           +R  RYSVVCEAAPK+K DSAAKR RQAEKRRIYNKARKSEIKTR+KKVLEALDGLKKK 
Sbjct: 61  QRPSRYSVVCEAAPKNKADSAAKRTRQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120

Query: 121 EAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEV+PIE LIAEAYSVIDKAVR GTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 184
           PAAA
Sbjct: 181 PAAA 184

[Close]

BLAST of Chy7G128840 vs. NCBI nr
Match: XP_022139608.1 (30S ribosomal protein S20, chloroplastic [Momordica charantia])

HSP 1 Score: 276 bits (705), Expect = 6.82e-92
Identity = 154/184 (83.70%), Postives = 165/184 (89.67%), Query Frame = 0


Query: 1   MAAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAAITCF++SSKF +LSLN  SSS PA+ SSSTL+SL+FSSN+S  AFSNGCLSM + 
Sbjct: 1   MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNGCLSMSEA 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           +R  RYSVVCEAAPK KVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALD LKKK 
Sbjct: 61  QRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDDLKKKP 120

Query: 121 EAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEV+ IE LIAEAYSVIDKAV+ GTLHRNTAARRKSRLARRKKAVEIHHGWY P S
Sbjct: 121 EAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPAS 180

Query: 181 PAAA 184
           PAAA
Sbjct: 181 PAAA 184

[Close]

BLAST of Chy7G128840 vs. NCBI nr
Match: XP_022976587.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima] >KAG6591939.1 30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024812.1 30S ribosomal protein S20, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 272 bits (696), Expect = 1.60e-90
Identity = 152/183 (83.06%), Postives = 165/183 (90.16%), Query Frame = 0


Query: 2   AAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKTE 61
           A A I+CFAL SKF +LSLN  SSS+P +PSSSTLRSLSFSSN+S+SAFSNGCLS+ K +
Sbjct: 3   ATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQ 62

Query: 62  RLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAE 121
           R  RYSVVCEAAPK K DSAAKRARQAEKRR+YNKARKSEIKTRMKKV+EALD LKKK E
Sbjct: 63  RPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPE 122

Query: 122 AQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDSP 181
           AQSEEV+PIE LIAEA+SVIDKAV+ GTLHRNTAARRKSRLARRKKAVEIHHGWYTP SP
Sbjct: 123 AQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPASP 182

Query: 182 AAA 184
           AAA
Sbjct: 183 AAA 184

[Close]

BLAST of Chy7G128840 vs. TAIR 10
Match: AT3G15190.1 (chloroplast 30S ribosomal protein S20, putative )

HSP 1 Score: 181.8 bits (460), Expect = 5.0e-46
Identity = 114/187 (60.96%), Postives = 139/187 (74.33%), Query Frame = 0


Query: 7   TCFALSSKFGSLSLNGFSSSIPAAP------SSSTL-RSLSFSSNIS-LSAFSNGCLSMR 66
           +C  L S+F  LSL G S S P++       +S+TL  SLSFS ++S   AFS G L ++
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWVQ 69

Query: 67  KTERLHRYSVVCE-AAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLK 126
           K     R  +VCE AAP  K DSAAKRARQAEKRR+YNK++KSE +TRMKKVLEAL+GLK
Sbjct: 70  KP---MRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLK 129

Query: 127 KKAEAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYT 185
           KK +AQ++E++ +E LI EAYS IDKAV+   LH+NT ARRKSRLARRKKAVEIHHGWY 
Sbjct: 130 KKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYV 189

The following BLAST results are available for this feature:

BLAST of Chy7G128840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82130	3.2e-45	61.24	30S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 P...	[more]
Q9ASV6	7.1e-45	60.96	30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS2...	[more]
Q8YWL3	2.8e-09	46.15	30S ribosomal protein S20 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576...	[more]
Q3M5D2	2.8e-09	46.15	30S ribosomal protein S20 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937...	[more]
A7HJB0	1.4e-08	46.07	30S ribosomal protein S20 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5...	[more]

BLAST of Chy7G128840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZK9	1.7e-86	98.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G630000 PE=3 SV=1	[more]
A0A5A7VMD2	1.2e-84	95.65	30S ribosomal protein S20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CJU9	1.2e-84	95.65	30S ribosomal protein S20, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501779...	[more]
A0A6J1CG14	5.0e-70	83.70	30S ribosomal protein S20, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1IG57	5.6e-69	83.06	30S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Chy7G128840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146049.1	1.57e-113	98.37	30S ribosomal protein S20, chloroplastic [Cucumis sativus] >KGN55105.1 hypotheti...	[more]
XP_008463697.1	4.33e-111	95.65	PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis melo] >KAA0066811.1...	[more]
XP_038899721.1	4.32e-95	84.78	30S ribosomal protein S20, chloroplastic [Benincasa hispida]	[more]
XP_022139608.1	6.82e-92	83.70	30S ribosomal protein S20, chloroplastic [Momordica charantia]	[more]
XP_022976587.1	1.60e-90	83.06	30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima] >KAG6591939.1 3...	[more]

BLAST of Chy7G128840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15190.1	5.0e-46	60.96	chloroplast 30S ribosomal protein S20, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 99..126
None	No IPR available	PANTHER	PTHR33398:SF5	30S RIBOSOMAL PROTEIN S20, CHLOROPLASTIC	coord: 1..183
IPR002583	Ribosomal protein S20	PFAM	PF01649	Ribosomal_S20p	coord: 79..165 e-value: 2.8E-23 score: 82.3
IPR002583	Ribosomal protein S20	TIGRFAM	TIGR00029	TIGR00029	coord: 78..164 e-value: 2.7E-18 score: 64.2
IPR002583	Ribosomal protein S20	PANTHER	PTHR33398	30S RIBOSOMAL PROTEIN S20	coord: 1..183
IPR002583	Ribosomal protein S20	HAMAP	MF_00500	Ribosomal_S20	coord: 75..168 score: 16.132696
IPR036510	Ribosomal protein S20 superfamily	GENE3D	1.20.58.110	Ribosomal protein S20	coord: 78..184 e-value: 4.3E-38 score: 131.8
IPR036510	Ribosomal protein S20 superfamily	SUPERFAMILY	46992	Ribosomal protein S20	coord: 79..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy7G128840.1	Chy7G128840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding