Chy7G128840 (gene) Cucumber (hystrix) v1

Overview
NameChy7G128840
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description30S ribosomal protein S20, chloroplastic
LocationchrH07: 486035 .. 488716 (+)
RNA-Seq ExpressionChy7G128840
SyntenyChy7G128840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCAGCTGCAATTACTTGCTTCGCTCTTTCTTCGAAGTTCGGAAGTCTTTCCCTTAATGGGTTTTCCTCCTCTATTCCCGCTGCCCCATCTTCTTCCACCCTCAGGTCTCTCAGTTTCTCCTCCAACATTTCACTTTCCGCCTTCTCCAATGGTGAGTTTTTATGGGGTTCCTTTGTTTTTCCATTTTATAAACTTCTGAATTGCTGCTGGACTTAATTTTGTCCGTTTTTGTAAAGGGTGTCTGTCGATGAGGAAAACTGAGAGGCTGCATCGTTACTCTGTGGTTTGCGAGGCAGCTCCTAAGTCCAAAGTTGATTCTGCTGCCAAGAGGGCTCGGCAGGCTGAGAAAAGACGTATTTACAATAAAGCCCGAAAGTCTGAAATTAAAACCAGGATGAAGAAGGTACTTAATTTTTACCCCTTTGTATGCGCATTTAAATATATTGAAATCTATAGGAATGATATACTCTAGAATTCGTTTTATCTCAGAGTATTGTATATTTCTTTTATAAGAAAGAATTTTTTATTGATGGAAGGAAATTACAAATGAAATGAAAGGAGATTAGTATAGCTAATAGTGGTGAAATAAGGGAGTGCATTTACACCAAGTCTCTACCATGTTAACTATAGCATAAAAAATTATAATGAGAAAGTTATTTGTCTTGGAAGACTCTACTATCCCGTACTTGCCAAATAGATGGTATTGAAAGTAGAGACATAGAACAAACACAAATTTACATGGAAATCCTAGTATAGGGAGAAAAACCACGATACTGATATTTCTTATTATTTTCTTATGATAATAAAGGTACCCTTGTATTTATAGGCAACACGAGCCTTATTAAAATAATAAAAAATTAGGACAAAGTAAGTCTTAACTACTCTTGGGCTTTCAACATGATTTAAGCCTACCATTTCTAACTGAGGGGAATAAATCATACAGAAGGGAGCTATTTGGAAAAACACCAGTGGGTTCTAGCTTCCAAAGGCGCCCGTCAGGTCTGTTGTGAAAGGAAACAGCTGCTAGAATGTGTAAGAGAGTTCCATATTCTTCAACTTCGGCCTCTCTCTGATTCCTTTTCAATATTAGGCTCCAACCCAAGGTTTGTGTTCCAAAATTTAGTATTAGCCCAATCTTGTTGTGAGAAAAGGCAAGAATGAGGGGGATTTGTTATAAAGGGGTTTGTATGGAATGTATTTATGGGTGATTTTCATTTTAGGGTGGTATGTGCCTAATTTGTAAGTACCTTTAGATAAACTGAGCTATATCAAGACTCAAGGGGTTAAGTACTCCTTTATGTTCCTTATAAAGTGTGCAAGTCGACGGTTGTTACTTAAGCTGTTGAAGATAAATGTGTGAAATGATTATCCTCATCTTGACTTGTCCTTAATGGGGACTGGATGAAATTCGTAAAATCAAGAGATGGAAAGTAGATGCTTACAGTTTTGTATTCAGTACCAATGGAAAAATGGTTATATATATATACTCGTGCATAATATGGTTTTGTTTGATAAGGTCAATGGTAGCTAGATGGTTTGGATTCTTGTTGTGAAAATCTGATCAGCAGAAAATCTTATTTTTTCAGAAATTATTATAATTACTGTTCACTGGGAAAAAATGGAGACTACAGTGACTAGTACAGAAATTTTTTTATGAATTTTGCTTCAGAAATCTTGTAATCAAGACTGATTTTCTCATTTATAAAAGTTTTCATTTAAGTTATTAAATTGGACTTTTGATGTATAACAGAAAAATTAAACTATTAAGATCCCAACTTGATGGAGAATTGTAGAAGGACTAGAAAGAAAAATCTAGTAAATGGTAAAGTTGAATCCTTTCTGATTGGTCAGAGACAGGTTCTTTAGGAAGTTTTCATGTGGGTAATGAGTTTATGACTGAATTTTGTATAATTTCTTTTGGATCTTTTTCCAGCCTCTCTTCAAGTCTTGAACTTATTCAAGGCCATTAAGGTGTTTGAATAGCCCTTTGGCTTAGCTGTTGATCTTTTTGAATCTTTGGTTGCGACCATCAACTGTTCTTTGCATGAGCGATGCAATATGATTAAACATCTTTTCCCGTTCTAATTATAAGTGGCCTTTGTGTTATCCTGTGGATCTTAGAGTTAATCCTAAGCTGTAAAGTCGTGTGTGACCAATGACTAAGAGGATCTCGTTTCTTCTTTTCAGTGCCACCAGGGGAGTGCGTAATTCTGTTTGCGAAGCTTTCTTTGGTCATCCTTCCAAAAAATCATAAGCTTTATGGCTTCTTGCTTTAGAGTTTTCTTATATCTGCTAAAGGACAGGACTAAAGCATAATCTTCATATGGTTTAATAAAACATCATCTACATACTTGCTTTTGGATATTGTGAAGAAAAAGATAAAATTTTCTGTTTCTTTCCAGAACTAATCAGCACAATAATGACCTCTCCCTCTTACATTTCCAGGTTCTGGAAGCTTTAGATGGTCTCAAGAAGAAAGCTGAAGCACAATCAGAGGAAGTCATTCCAATTGAGACTCTCATTGCAGAAGCATATTCGGTGATCGACAAAGCCGTGAGAGCAGGCACGTTGCACCGAAACACTGCAGCACGACGAAAATCTCGGCTCGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCGGATTCTCCAGCGGCAGCGTGA

mRNA sequence

ATGGCGGCAGCTGCAATTACTTGCTTCGCTCTTTCTTCGAAGTTCGGAAGTCTTTCCCTTAATGGGTTTTCCTCCTCTATTCCCGCTGCCCCATCTTCTTCCACCCTCAGGTCTCTCAGTTTCTCCTCCAACATTTCACTTTCCGCCTTCTCCAATGGGTGTCTGTCGATGAGGAAAACTGAGAGGCTGCATCGTTACTCTGTGGTTTGCGAGGCAGCTCCTAAGTCCAAAGTTGATTCTGCTGCCAAGAGGGCTCGGCAGGCTGAGAAAAGACGTATTTACAATAAAGCCCGAAAGTCTGAAATTAAAACCAGGATGAAGAAGGTTCTGGAAGCTTTAGATGGTCTCAAGAAGAAAGCTGAAGCACAATCAGAGGAAGTCATTCCAATTGAGACTCTCATTGCAGAAGCATATTCGGTGATCGACAAAGCCGTGAGAGCAGGCACGTTGCACCGAAACACTGCAGCACGACGAAAATCTCGGCTCGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCGGATTCTCCAGCGGCAGCGTGA

Coding sequence (CDS)

ATGGCGGCAGCTGCAATTACTTGCTTCGCTCTTTCTTCGAAGTTCGGAAGTCTTTCCCTTAATGGGTTTTCCTCCTCTATTCCCGCTGCCCCATCTTCTTCCACCCTCAGGTCTCTCAGTTTCTCCTCCAACATTTCACTTTCCGCCTTCTCCAATGGGTGTCTGTCGATGAGGAAAACTGAGAGGCTGCATCGTTACTCTGTGGTTTGCGAGGCAGCTCCTAAGTCCAAAGTTGATTCTGCTGCCAAGAGGGCTCGGCAGGCTGAGAAAAGACGTATTTACAATAAAGCCCGAAAGTCTGAAATTAAAACCAGGATGAAGAAGGTTCTGGAAGCTTTAGATGGTCTCAAGAAGAAAGCTGAAGCACAATCAGAGGAAGTCATTCCAATTGAGACTCTCATTGCAGAAGCATATTCGGTGATCGACAAAGCCGTGAGAGCAGGCACGTTGCACCGAAACACTGCAGCACGACGAAAATCTCGGCTCGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCGGATTCTCCAGCGGCAGCGTGA

Protein sequence

MAAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKTERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAEAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDSPAAA*
Homology
[Close]
BLAST of Chy7G128840 vs. ExPASy Swiss-Prot
Match: P82130 (30S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 PE=1 SV=2)

HSP 1 Score: 183.0 bits (463), Expect = 3.2e-45
Identity = 109/178 (61.24%), Postives = 132/178 (74.16%), Query Frame = 0 

Query: 1   MAAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MA  +  C ++SSK  +LS +  S+  P    +S+L+ L+FS+N+S   FS GC S+   
Sbjct: 6   MACVSSQCLSISSKLHNLSFS--STQFP----NSSLKPLTFSANLSQPLFSQGCSSLGSF 65

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           +R   +SVVCE A   K DSAAKR RQAE RR+ NKARKSE+KTRM+KV EALD LKKK+
Sbjct: 66  QR-RGFSVVCEVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKS 125

Query: 121 EAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 179
            A +EE++PI+ LIAEAYS IDKAV  GTLHRNTAARRKSRLAR KK VEIHHGWYTP
Sbjct: 126 GASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTP 176

[Close]
BLAST of Chy7G128840 vs. ExPASy Swiss-Prot
Match: Q9ASV6 (30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS20 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.1e-45
Identity = 114/187 (60.96%), Postives = 139/187 (74.33%), Query Frame = 0 

Query: 7   TCFALSSKFGSLSLNGFSSSIPAAP------SSSTL-RSLSFSSNIS-LSAFSNGCLSMR 66
           +C  L S+F  LSL G S S P++       +S+TL  SLSFS ++S   AFS G L ++
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWVQ 69

Query: 67  KTERLHRYSVVCE-AAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLK 126
           K     R  +VCE AAP  K DSAAKRARQAEKRR+YNK++KSE +TRMKKVLEAL+GLK
Sbjct: 70  KP---MRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLK 129

Query: 127 KKAEAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYT 185
           KK +AQ++E++ +E LI EAYS IDKAV+   LH+NT ARRKSRLARRKKAVEIHHGWY 
Sbjct: 130 KKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYV 189

[Close]
BLAST of Chy7G128840 vs. ExPASy Swiss-Prot
Match: Q8YWL3 (30S ribosomal protein S20 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rpsT PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-09
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 0 

Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAEAQSEEVIPIETLIAEAYS 139
           SA KRA+ AE+ R+ NK  KS +KT MK  L A+         +S++    +T +A AYS
Sbjct: 6   SALKRAQIAERNRVRNKTYKSSVKTLMKNYLSAVQAYAANPTPESKQ--EAQTRLAAAYS 65

Query: 140 VIDKAVRAGTLHRNTAARRKSRLARRKKAVE 171
            IDKAV+ G LH N  AR+KSRLA + K +E
Sbjct: 66  RIDKAVKRGILHPNNGARKKSRLASKLKPIE 94

[Close]
BLAST of Chy7G128840 vs. ExPASy Swiss-Prot
Match: Q3M5D2 (30S ribosomal protein S20 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rpsT PE=3 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-09
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 0 

Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAEAQSEEVIPIETLIAEAYS 139
           SA KRA+ AE+ R+ NK  KS +KT MK  L A+         +S++    +T +A AYS
Sbjct: 7   SALKRAQIAERNRVRNKTYKSSVKTLMKNYLSAVQAYAANPTPESKQ--EAQTRLAAAYS 66

Query: 140 VIDKAVRAGTLHRNTAARRKSRLARRKKAVE 171
            IDKAV+ G LH N  AR+KSRLA + K +E
Sbjct: 67  RIDKAVKRGILHPNNGARKKSRLASKLKPIE 95

[Close]
BLAST of Chy7G128840 vs. ExPASy Swiss-Prot
Match: A7HJB0 (30S ribosomal protein S20 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rpsT PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-08
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 0 

Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAEAQSEEVIPIETLIAEAYS 139
           SA KR R +EKRR+ NKA K+ +K ++K VL A+        AQ +    I  L  +A S
Sbjct: 6   SAEKRVRVSEKRRVLNKAYKTSMKNKIKAVLAAI--------AQKKSAEEIMELFRKAQS 65

Query: 140 VIDKAVRAGTLHRNTAARRKSRLARRKKA 169
            IDKA ++G +H+N A+RRKSRLA + KA
Sbjct: 66  AIDKAAKSGAIHKNQASRRKSRLAVKVKA 86

[Close]
BLAST of Chy7G128840 vs. ExPASy TrEMBL
Match: A0A0A0KZK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G630000 PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.7e-86
Identity = 181/184 (98.37%), Postives = 184/184 (100.00%), Query Frame = 0 

Query: 1   MAAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAAITCF+LSSKFG+LSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT
Sbjct: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA
Sbjct: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEV+PIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Chy7G128840 vs. ExPASy TrEMBL
Match: A0A5A7VMD2 (30S ribosomal protein S20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001620 PE=3 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.2e-84
Identity = 176/184 (95.65%), Postives = 182/184 (98.91%), Query Frame = 0 

Query: 1   MAAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAA+TCFALSSKFG+LSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           ER+HRYSVVCEAAPK+K DSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEV+PIE L+AEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Chy7G128840 vs. ExPASy TrEMBL
Match: A0A1S3CJU9 (30S ribosomal protein S20, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501779 PE=3 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.2e-84
Identity = 176/184 (95.65%), Postives = 182/184 (98.91%), Query Frame = 0 

Query: 1   MAAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAA+TCFALSSKFG+LSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           ER+HRYSVVCEAAPK+K DSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEV+PIE L+AEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Chy7G128840 vs. ExPASy TrEMBL
Match: A0A6J1CG14 (30S ribosomal protein S20, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010468 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 5.0e-70
Identity = 154/184 (83.70%), Postives = 165/184 (89.67%), Query Frame = 0 

Query: 1   MAAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAAITCF++SSKF +LSLN  SSS PA+ SSSTL+SL+FSSN+S  AFSNGCLSM + 
Sbjct: 1   MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNGCLSMSEA 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           +R  RYSVVCEAAPK KVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALD LKKK 
Sbjct: 61  QRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDDLKKKP 120

Query: 121 EAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEV+ IE LIAEAYSVIDKAV+ GTLHRNTAARRKSRLARRKKAVEIHHGWY P S
Sbjct: 121 EAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPAS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Chy7G128840 vs. ExPASy TrEMBL
Match: A0A6J1IG57 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111476939 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.6e-69
Identity = 152/183 (83.06%), Postives = 165/183 (90.16%), Query Frame = 0 

Query: 2   AAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKTE 61
           A A I+CFAL SKF +LSLN  SSS+P +PSSSTLRSLSFSSN+S+SAFSNGCLS+ K +
Sbjct: 3   ATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQ 62

Query: 62  RLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAE 121
           R  RYSVVCEAAPK K DSAAKRARQAEKRR+YNKARKSEIKTRMKKV+EALD LKKK E
Sbjct: 63  RPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPE 122

Query: 122 AQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDSP 181
           AQSEEV+PIE LIAEA+SVIDKAV+ GTLHRNTAARRKSRLARRKKAVEIHHGWYTP SP
Sbjct: 123 AQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPASP 182

Query: 182 AAA 185
           AAA
Sbjct: 183 AAA 184

[Close]
BLAST of Chy7G128840 vs. NCBI nr
Match: XP_004146049.1 (30S ribosomal protein S20, chloroplastic [Cucumis sativus] >KGN55105.1 hypothetical protein Csa_012631 [Cucumis sativus])

HSP 1 Score: 330 bits (847), Expect = 1.57e-113
Identity = 181/184 (98.37%), Postives = 184/184 (100.00%), Query Frame = 0 

Query: 1   MAAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAAITCF+LSSKFG+LSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT
Sbjct: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA
Sbjct: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEV+PIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 184
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Chy7G128840 vs. NCBI nr
Match: XP_008463697.1 (PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis melo] >KAA0066811.1 30S ribosomal protein S20 [Cucumis melo var. makuwa] >TYK27958.1 30S ribosomal protein S20 [Cucumis melo var. makuwa])

HSP 1 Score: 324 bits (831), Expect = 4.33e-111
Identity = 176/184 (95.65%), Postives = 182/184 (98.91%), Query Frame = 0 

Query: 1   MAAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAA+TCFALSSKFG+LSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           ER+HRYSVVCEAAPK+K DSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEV+PIE L+AEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 184
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Chy7G128840 vs. NCBI nr
Match: XP_038899721.1 (30S ribosomal protein S20, chloroplastic [Benincasa hispida])

HSP 1 Score: 284 bits (726), Expect = 4.32e-95
Identity = 156/184 (84.78%), Postives = 167/184 (90.76%), Query Frame = 0 

Query: 1   MAAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAA A++CF+L SKF +LSLN  SS IPA+PSS TLRSLSFSSN S+SAFSNGCL+M K 
Sbjct: 1   MAATAVSCFSLPSKFRNLSLNASSSCIPASPSSLTLRSLSFSSNTSVSAFSNGCLTMSKA 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           +R  RYSVVCEAAPK+K DSAAKR RQAEKRRIYNKARKSEIKTR+KKVLEALDGLKKK 
Sbjct: 61  QRPSRYSVVCEAAPKNKADSAAKRTRQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120

Query: 121 EAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEV+PIE LIAEAYSVIDKAVR GTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 184
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Chy7G128840 vs. NCBI nr
Match: XP_022139608.1 (30S ribosomal protein S20, chloroplastic [Momordica charantia])

HSP 1 Score: 276 bits (705), Expect = 6.82e-92
Identity = 154/184 (83.70%), Postives = 165/184 (89.67%), Query Frame = 0 

Query: 1   MAAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAAITCF++SSKF +LSLN  SSS PA+ SSSTL+SL+FSSN+S  AFSNGCLSM + 
Sbjct: 1   MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNGCLSMSEA 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           +R  RYSVVCEAAPK KVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALD LKKK 
Sbjct: 61  QRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDDLKKKP 120

Query: 121 EAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEV+ IE LIAEAYSVIDKAV+ GTLHRNTAARRKSRLARRKKAVEIHHGWY P S
Sbjct: 121 EAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPAS 180

Query: 181 PAAA 184
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Chy7G128840 vs. NCBI nr
Match: XP_022976587.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima] >KAG6591939.1 30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024812.1 30S ribosomal protein S20, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 272 bits (696), Expect = 1.60e-90
Identity = 152/183 (83.06%), Postives = 165/183 (90.16%), Query Frame = 0 

Query: 2   AAAAITCFALSSKFGSLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKTE 61
           A A I+CFAL SKF +LSLN  SSS+P +PSSSTLRSLSFSSN+S+SAFSNGCLS+ K +
Sbjct: 3   ATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQ 62

Query: 62  RLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAE 121
           R  RYSVVCEAAPK K DSAAKRARQAEKRR+YNKARKSEIKTRMKKV+EALD LKKK E
Sbjct: 63  RPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPE 122

Query: 122 AQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDSP 181
           AQSEEV+PIE LIAEA+SVIDKAV+ GTLHRNTAARRKSRLARRKKAVEIHHGWYTP SP
Sbjct: 123 AQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPASP 182

Query: 182 AAA 184
           AAA
Sbjct: 183 AAA 184

[Close]
BLAST of Chy7G128840 vs. TAIR 10
Match: AT3G15190.1 (chloroplast 30S ribosomal protein S20, putative )

HSP 1 Score: 181.8 bits (460), Expect = 5.0e-46
Identity = 114/187 (60.96%), Postives = 139/187 (74.33%), Query Frame = 0 

Query: 7   TCFALSSKFGSLSLNGFSSSIPAAP------SSSTL-RSLSFSSNIS-LSAFSNGCLSMR 66
           +C  L S+F  LSL G S S P++       +S+TL  SLSFS ++S   AFS G L ++
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWVQ 69

Query: 67  KTERLHRYSVVCE-AAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLK 126
           K     R  +VCE AAP  K DSAAKRARQAEKRR+YNK++KSE +TRMKKVLEAL+GLK
Sbjct: 70  KP---MRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLK 129

Query: 127 KKAEAQSEEVIPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYT 185
           KK +AQ++E++ +E LI EAYS IDKAV+   LH+NT ARRKSRLARRKKAVEIHHGWY 
Sbjct: 130 KKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYV 189

The following BLAST results are available for this feature:
BLAST of Chy7G128840 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P821303.2e-4561.2430S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 P... [more]
Q9ASV67.1e-4560.9630S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS2... [more]
Q8YWL32.8e-0946.1530S ribosomal protein S20 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576... [more]
Q3M5D22.8e-0946.1530S ribosomal protein S20 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937... [more]
A7HJB01.4e-0846.0730S ribosomal protein S20 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5... [more]
BLAST of Chy7G128840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZK91.7e-8698.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G630000 PE=3 SV=1[more]
A0A5A7VMD21.2e-8495.6530S ribosomal protein S20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3CJU91.2e-8495.6530S ribosomal protein S20, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501779... [more]
A0A6J1CG145.0e-7083.7030S ribosomal protein S20, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1IG575.6e-6983.0630S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
BLAST of Chy7G128840 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146049.11.57e-11398.3730S ribosomal protein S20, chloroplastic [Cucumis sativus] >KGN55105.1 hypotheti... [more]
XP_008463697.14.33e-11195.65PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis melo] >KAA0066811.1... [more]
XP_038899721.14.32e-9584.7830S ribosomal protein S20, chloroplastic [Benincasa hispida][more]
XP_022139608.16.82e-9283.7030S ribosomal protein S20, chloroplastic [Momordica charantia][more]
XP_022976587.11.60e-9083.0630S ribosomal protein S20, chloroplastic-like [Cucurbita maxima] >KAG6591939.1 3... [more]
BLAST of Chy7G128840 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G15190.15.0e-4660.96chloroplast 30S ribosomal protein S20, putative [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 99..126
NoneNo IPR availablePANTHERPTHR33398:SF530S RIBOSOMAL PROTEIN S20, CHLOROPLASTICcoord: 1..183
IPR002583Ribosomal protein S20PFAMPF01649Ribosomal_S20pcoord: 79..165
e-value: 2.8E-23
score: 82.3
IPR002583Ribosomal protein S20TIGRFAMTIGR00029TIGR00029coord: 78..164
e-value: 2.7E-18
score: 64.2
IPR002583Ribosomal protein S20PANTHERPTHR3339830S RIBOSOMAL PROTEIN S20coord: 1..183
IPR002583Ribosomal protein S20HAMAPMF_00500Ribosomal_S20coord: 75..168
score: 16.132696
IPR036510Ribosomal protein S20 superfamilyGENE3D1.20.58.110Ribosomal protein S20coord: 78..184
e-value: 4.3E-38
score: 131.8
IPR036510Ribosomal protein S20 superfamilySUPERFAMILY46992Ribosomal protein S20coord: 79..181

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy7G128840.1Chy7G128840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding