Chy6G127930 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G127930
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH06: 26624179 .. 26624645 (-)
RNA-Seq Expression	Chy6G127930
Synteny	Chy6G127930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACACTATCTACCCATCAAAACCCGAAAATGAAAAAATGAAAAAATGAAATCCCCATTAAAACAAGTAGCAATTTTCAAACACGGGATGGAGATGTCATACGAAATGCCACCCTGTATGCTTATCGTATTACTTTAATTTTTGTTTAATAACCGTAATTTGATATTTGAAAATTAAGTAATACTCTAATGTATATTAAACGTGTTTTTGTTTCATAAGGATATCGACTTTTAAATTTGTGTATAATAACAGGAGCGAAAACAGAATGGCCAGAGCTTGTGGGTAGAGATGCAAATGAAGTCGAGTTGGTTATAGTGAAGGAAAATCCTTTTACCTTGCCTTATGTATCTCACCCAGATTTAGAGTTCGACATGGTCGGTGCAAATTCGAAATTCTTAGTTAGTCTTACGGTCAACAGTCTTGAAGAATATTTGATTGTTAAAACCCCTAGATGCGGACACTAA

mRNA sequence

ATGTCACACTATCTACCCATCAAAACCCGAAAATGAAAAAATGAAAAAATGAAATCCCCATTAAAACAAGTAGCAATTTTCAAACACGGGATGGAGATGTCATACGAAATGCCACCCTGAGCGAAAACAGAATGGCCAGAGCTTGTGGGTAGAGATGCAAATGAAGTCGAGTTGGTTATAGTGAAGGAAAATCCTTTTACCTTGCCTTATGTATCTCACCCAGATTTAGAGTTCGACATGGTCGGTGCAAATTCGAAATTCTTAGTTAGTCTTACGGTCAACAGTCTTGAAGAATATTTGATTGTTAAAACCCCTAGATGCGGACACTAA

Coding sequence (CDS)

ATGTCACACTATCTACCCATCAAAACCCGAAAATGAAAAAATGAAAAAATGAAATCCCCATTAAAACAAGTAGCAATTTTCAAACACGGGATGGAGATGTCATACGAAATGCCACCCTGAGCGAAAACAGAATGGCCAGAGCTTGTGGGTAGAGATGCAAATGAAGTCGAGTTGGTTATAGTGAAGGAAAATCCTTTTACCTTGCCTTATGTATCTCACCCAGATTTAGAGTTCGACATGGTCGGTGCAAATTCGAAATTCTTAGTTAGTCTTACGGTCAACAGTCTTGAAGAATATTTGATTGTTAAAACCCCTAGATGCGGACACTAA

Protein sequence

MSHYLPIKTRK*KNEKMKSPLKQVAIFKHGMEMSYEMPP*AKTEWPELVGRDANEVELVIVKENPFTLPYVSHPDLEFDMVGANSKFLVSLTVNSLEEYLIVKTPRCGH*

Homology

[Close]

BLAST of Chy6G127930 vs. ExPASy TrEMBL
Match: A0A0A0L652 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002460 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.9e-34
Identity = 69/79 (87.34%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 31  MEMSYEMPP*AKTEWPELVGRDANEVELVIVKENPFTLPYVSHPDLEFDMVGANSKFLVS 90
           MEMS+EMPP AKTEWPELVGRDANE E +IVKENPFTLPYVSHPDLEFDM+GAN KFLVS
Sbjct: 1   MEMSHEMPPGAKTEWPELVGRDANEAEFIIVKENPFTLPYVSHPDLEFDMIGANPKFLVS 60

Query: 91  LTVNSLEEYLIVKTPRCGH 110
           L VN+LE+YLIVKTPRCGH
Sbjct: 61  LPVNNLEDYLIVKTPRCGH 79

[Close]

BLAST of Chy6G127930 vs. NCBI nr
Match: KGN55651.2 (hypothetical protein Csa_011057 [Cucumis sativus])

HSP 1 Score: 189 bits (481), Expect = 3.45e-60
Identity = 92/109 (84.40%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MSHYLPIKTRK*KNEKMKSPLKQVAIFKHGMEMSYEMPP*AKTEWPELVGRDANEVELVI 60
           MS YLPIKTR    +KMKS LKQVAIFKHGMEMS+EMPP AKTEWPELVGRDANE E +I
Sbjct: 1   MSRYLPIKTR---IKKMKSTLKQVAIFKHGMEMSHEMPPGAKTEWPELVGRDANEAEFII 60

Query: 61  VKENPFTLPYVSHPDLEFDMVGANSKFLVSLTVNSLEEYLIVKTPRCGH 109
           VKENPFTLPYVSHPDLEFDM+GAN KFLVSL VN+LE+YLIVKTPRCGH
Sbjct: 61  VKENPFTLPYVSHPDLEFDMIGANPKFLVSLPVNNLEDYLIVKTPRCGH 106

[Close]

BLAST of Chy6G127930 vs. NCBI nr
Match: XP_022781148.1 (subtilisin inhibitor CLSI-I-like [Stylophora pistillata] >PFX31298.1 Subtilisin inhibitor 1 [Stylophora pistillata])

HSP 1 Score: 48.1 bits (113), Expect = 1.36e-04
Identity = 25/73 (34.25%), Postives = 39/73 (53.42%), Query Frame = 0


Query: 41  AKTEWPELVGRDANEVELVIVKENPFTLPYVSHPDLEFDMVGANSKFLVSLTVNSLEEYL 100
           +KTEWPELVG+DA E   +I KE         HP L+  ++  NS  + +L  N +  ++
Sbjct: 18  SKTEWPELVGKDAEEATTIIDKE---------HPGLKIQIIPENSFVICTLEENRVRIFV 77

Query: 101 -----IVKTPRCG 108
                +++TP  G
Sbjct: 78  NRQQTVIRTPHIG 81

[Close]

BLAST of Chy6G127930 vs. NCBI nr
Match: XP_020618902.1 (subtilisin inhibitor-like [Orbicella faveolata])

HSP 1 Score: 47.4 bits (111), Expect = 2.70e-04
Identity = 29/90 (32.22%), Postives = 43/90 (47.78%), Query Frame = 0


Query: 24  VAIFKHGMEMSYEMPP*AKTEWPELVGRDANEVELVIVKENPFTLPYVSHPDLEFDMVGA 83
           +++ K  +    E P   KTEWPELVG+DA E   VI KE         HP L+  ++  
Sbjct: 1   MSLLKQKLFKWKEKPKILKTEWPELVGKDAEEATTVIDKE---------HPGLKIQIIPE 60

Query: 84  NSKFLVSLTVNSLE-----EYLIVKTPRCG 108
           NS  + +L    +      E ++V+ P  G
Sbjct: 61  NSFVIKNLEEKRVRIFVDREQMVVRIPCIG 81

The following BLAST results are available for this feature:

BLAST of Chy6G127930 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G127930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L652	5.9e-34	87.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002460 PE=3 SV=1	[more]

BLAST of Chy6G127930 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55651.2	3.45e-60	84.40	hypothetical protein Csa_011057 [Cucumis sativus]	[more]
XP_022781148.1	1.36e-04	34.25	subtilisin inhibitor CLSI-I-like [Stylophora pistillata] >PFX31298.1 Subtilisin ...	[more]
XP_020618902.1	2.70e-04	32.22	subtilisin inhibitor-like [Orbicella faveolata]	[more]

BLAST of Chy6G127930 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000864	Proteinase inhibitor I13, potato inhibitor I	PFAM	PF00280	potato_inhibit	coord: 40..72 e-value: 1.1E-5 score: 26.1
None	No IPR available	GENE3D	3.30.10.10	Trypsin Inhibitor V, subunit A	coord: 35..66 e-value: 1.7E-6 score: 29.8
IPR036354	Proteinase inhibitor I13, potato inhibitor I superfamily	SUPERFAMILY	54654	CI-2 family of serine protease inhibitors	coord: 37..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G127930.1	Chy6G127930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0006970	response to osmotic stress
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0009611	response to wounding
biological_process	GO:0010431	seed maturation
biological_process	GO:0010375	stomatal complex patterning
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0009927	histidine phosphotransfer kinase activity
molecular_function	GO:0005034	osmosensor activity
molecular_function	GO:0000155	phosphorelay sensor kinase activity
molecular_function	GO:0004867	serine-type endopeptidase inhibitor activity