Chy6G127870 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G127870
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	DNA-directed RNA polymerase subunit
Location	chrH06: 26593885 .. 26602022 (+)
RNA-Seq Expression	Chy6G127870
Synteny	Chy6G127870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGCGATTCCCTTACTCTCCGGCAGAGGTTGCCAAAGTCAGAATGGTTCAGTTTGGCATTCTTAGTCCCGACGAGATTGTAATTCTCTTACCCACACCGCCTCATCAATTTTCTTTCATTTTGTCTGATTCTGTTTTAATCTTGAGAAGGGGTCGTTCGTGGGTCAACAATGCTTTACATTTGTATGAAGTGTGTTTACCTTAGGAAGTGGGTTCAACTCGGTATATGCAGCTGGTTCTTTTTTTTTTGTTACTTGGTGGATATAGAGATGAGGGCCTTGGCAACGTTCTTTTCTTTTTCCTGTTCTCTAGTTGTTGTTTCATTGTTTCTTTTACATTGGAAGGCATTGGTTTTAGTGGTCTTTTTTGGTTTTGTCTCTCAGATTACAAATTTGTAAACTTGTAATTTTAAGTGAAGTAAATGTATGTTCTTTTTTGAAGTAAAAAGTCCGAAATTATTATGTCATATTCAAAAGGCTGCACTTCTTTTTGTTTTCGATTAATTGGAAATAGGAAATAAGAAACTAGATTCTTTTTGTATGCCAATGTTTCATGAGAAATAGAGAATAGAATCTGTTCCAAAATGTAGACGTTTCTAAAGATTGGAAACTGGACATGAAAATGAGAAATGAAATATTTTTCCAACCACTCCCTGGTGTCTAAAATCGTACATTCTTTGGATTGCAGAGGCAAATGTCCGTGGTACAGATTGAGCACGGTGAAACCACAGAGAGGGGTAAGCCAAAAGTAGCTGGTTTGAGTGACCCACGACTTGGTACAATCGACAGAAAAATGAAGTGTGAAACTTGCACTGCAAATATGGCTGAGTGTCCTGGGCACTTTGGGCACCTCGAGCTTGCCAAACCAATGTTCCATATTGGGTTTATGAAGACCGTGCTCACTATTATGCGTTCTGTGTGCTTCAATTGCTCAAAGATTCTAGTTGACGAGGTTCTTTCTTAATATTATATTTGATGGTTTCGGGATATATTAGAAAATCACGCTGCGCACATTTTTTTTTTTCTTTTTCTGCTTGCTAGTTGCTATGATTCACTATGAAGGATTCTAAAAGACTGCGTAGGATTACATGGGAAGGGACATATATGGTGCCATGTAATAAGTAGTTTGTTATGACTTTCAAGAGTAAAGTTGAAAATATAATTGGGATATATCTTTTAAGATGTTGAGATAATAGGAATTCGGGTGTAAGTGATCCTTGTCTCATTGAGGAGTTATTCTAGACTTCGTATGGAAATAGTCAATTTCCCTCAGCATATCTGTTTAACATCTTTCAGGAAGACCCTAAGTTTAAACAAGCATTGCGGATAAAGAATCCTAAGAATAGGCTTAGAAAGATTTTGGATGCATGCAAGAACAAAACCAAGTGTGAGGGTGGCGATGAAATTGATGTTCAAGGTCAAGATTCAGATCAACCAGTCAAAAAGAGTCGGGGTGGCTGTGGTGCTCAGCAACCTAAGATCTCAATTGAGGGTATGAAGATGACTGCAGAGTACAAGGCCCAAAGGAAAAAAAATGATGATCCGGAGCAGCTGCCTGAGCCTGTGGAAAGAAAACAAACACTTACTGCTGAAAGGGTGAACATTCAATCCCGATCAACATTACTTTTTGTAATTATTTTTTTGCATGTATGTCTTCATGAGGTCGAAGTTTGATGGATTTTTGTAGGTTCTTGGCATTCTGAAAAGAATAACTGATGAGGATTGCAAACTCTTGGGCCTTAATCCAAAGTATGCTCGGCCTGACTGGATGATTCTGCAAGTCCTTCCAATTCCGCCTCCTCCTGTGAGACCATCAGTTATGATGGACACCTCATCAAGAAGTGAGGTATGCTCATTCTGATTTTGTTTTCTGACGTCTAATTGTTTATTGTTTAGTTAACTGCTTCCCAATACAATTCATTTTGTTTTTCTAGTTAGTTTCTGAGGTACTGTTATATGATGCTTTATCAGATCAATTTTAACACGTTTCTTAATGCAGGACGATCTAACTCATCAGTTGGCAATGATTATAAGGCACAACGAAAACCTCAGGAGACAAGAGAGAAATGGTTCTCCTGCACATATCATTTCAGAGTTTGCGCAACTACTGCAGTTTCATATAGCCACATATTTTGATAATGAATTACCTGGACTACCCAGGGTATTGAGTCTCTTTTGAAGCTATATTATGTTTTTTTTCCCAACTTTTTTTTCTTTTCTTACGTTAGTATGCTGTTATAATATAGGCCACACAGAGATCTGGGAGGCCCATTAAATCTATTTGTAGCAGGCTCAAGGCAAAGGAAGGTCGGATAAGAGGAAATTTGATGGGAAAACGTGTAGATTTTTCAGCACGAACCGTTATTACACCTGATCCAACCATTAATATTGATGAACTGGGGGTGCCTTGGAGTATTGCTCTGAACCTTACGTATCCAGAGACTGTGACACCATATAATATAGAAAGGTCCATATTTTAAAACCATTTCTTGCTTATTGTTTGTTTCCCTTTCACAATATTTATTGTTCAGGATTGGTTTTTCCTTTTGAAAATCACAGGTTAAAGGAACTTGTTGAATATGGTCCCCATCCTCCACCTGGTAAAACCGGTGCCAAGTACATCATACGAGATGATGGGCAGAGGCTTGATCTTCGTTATCTTAAAAAAAGTAGTGATCATCATTTGGAGCTTGGGTACAAGGCAAGATTTTCTGTTCAAACATGCAATCTAATATTTTTACGTATTCTATAATTCCATCCTAATTCTTTTGCTGCTGTGATCCTAGGTGGAGCGCCATTTAAACGATGGTGATTTTGTACTTTTTAATCGTCAGCCTAGTCTCCATAAAATGTCTATCATGGGACACAGAATCAAGATCATGCCGTACTCAACTTTCCGTCTAAATTTATCTGTCACATCACCTTACAATGCTGATTTTGATGGCGATGAAATGAACATGCATGTTCCTCAGTCATTTGAGACAAGGGCAGAAGTATTGGAACTCATGATGGTTCCCAAATGCATTGTGTCACCTCAGTCGAACCGTCCTGTAATGGGTATAGTGCAAGATACGCTCCTAGGATGCCGTAAAATTACAAAAAGGGACACCTTTATAACGAAGGTGAGAGCAATATGATTGTTATTTCTTGCCCTTTGTCTTCGAAACATTTTTGTTTGTTTTATATAACTTGTAAAATGGGATCATGAAACTGCATCGGTTAATTTGCAGGATGTTTTCATGAATATTTTGATGTGGTGGGAAGATTTTGACGGGAAAATTCCTGCCCCTGCAATTTTAAAGCCACAACCTCTTTGGACGGGAAAGCAAGTTTTTAATCTTATTATACCAAAGCAGATTAATCTCACAAGAACTTCTGCCTGGCATTCTGAATCCGAAACTGGACACATAACTCCTGGAGATACTTTTGTTAGGATTGAGAAAGGGGAGCTACTTTCTGGAACTCTTTGCAAGAAGGCACTTGGAACATCAACTGGAAGTCTTATACATGTTATTTGGTATGCATTAGCAATAGTGCTATGCACTGCTTTTCAACTGGATGTGGTCTGTAATCAGCATCATTATCATCTCTAAAAAAAGTTCTTGCACTTTTTTTTGAACTCATATTACATCTTTTAGAAGGAACTGTTCAGACTCTTGCTTGACTAATTGGATACGTCTTTATTACACCAAAATTAAAAAAAAAAAAAATCTGCTGTTGGGATGCAGCCTTGAGGAGGTATGCCACTTAGAGATGGAGGTTAGTGTTTCAAATGTGATGTTCTTCCGATTGAGTTGCCAAAATGACGGAACTAAACAGTCTTGTAAAAATGACAGAAATGCCTTTTATGATAATTTTTATAAAACTGGAACTCAAATTGTAATTTCACATGTTTTTTCTTTTAAAGTTTATTTATTAAGTCTAAATGACTTGGTTTTTGTTTTTTTTTTCATTCAACTATTTAGGAACTGCTTTTTCTCAAGACTTTCCAGGCCAGCTTTTATTAGTCCTCCCATTCCCCTTTCTTCTTTGTGGTTTTTATCATGATACTTGCTCATTAGACTCTTATTTTGTTTAACAATGGTGTTTAATGTAGTTTTTATGTTGCCTTCTGTGTTTTGTAACATTCTTTCTTTTTGTCCCGTTTCTAATCATTTAAATGTTTTCAGGGAGGAGGTTGGTCCGGATGCAGCCCGAAAATTTCTGGGTCATACTCAGTGGCTTGTCAATTACTGGCTTTTGCAGAATGCTTTTAGCATTGGGATTGGGGATACAATTGCTGATGCAGCAACCATGGAGAAAATTAATGAAACTATCTCTGCTGCTAAAAATGAAGTGAAAAACCTTATAAAGAAAGCCCAAGAACGGAGTTTAGAGCCTGAACCTGGACGAACAATGATGGATTCATTTGAAAACAAAGTGAATCAAGTCCTGAATAAGGCTCGTGACGATGCTGGTAGTAGTGCGCAAAAAAGTTTGTCCGAGAGTAACAATTTGAAAGCTATGGTCACTGCAGGATCCAAGGGCAGTTTCATCAACATCTCCCAGATGACTGCTTGTGTGGGGCAGCAGAATGTCGAAGGGAAGCGAATACCATTTGGTTTCATTGATCGAACATTGCCCCATTTCACTAAAGATGATTATGGGCCTGAAAGTCGTGGCTTTGTTGAGAATTCATATCTTCGAGGTTTGACTCCACAGGAGTTCTTTTTTCATGCTATGGGTGGTAGGGAAGGTCTTATTGATACTGCAGTCAAGACCTCTGAAACAGGCTACATCCAGAGGAGGCTGGTGAAGGCCATGGAGGATATCATGGTTAAATATGATGGGACTGTTAGAAACTCATTGGGTGATGTTATTCAGTTTCTTTATGGTGAAGATGGTATGGACGCTGTTTGGATAGAATCACAGAAACTTGATTCTTTGAAAATGAAGAAAAAGGAATTTGAGAGGATCTTCAGGTATGAGTTTGAAGATGAAAACTGGAAGCCAAATTACATGTTGCCAGAGCATGTAGAAGATTTGAAAACCATCAGAGAATTCCGCAATGTGTTTGAGGCCGAAGTTCAAAAGCTTGAAGCGGACAGGTATCAATTAGGAACAGAAATTGCAACTACAGGTGAAAACTCTTGGCCAATGCCAGTTAACCTGAAAAGGCTAATTCAGAATGCCCAGAAAACTTTCAAGATTGACTTTCGAAGGGCTTCTGACATGCATCCTATGGAAATTGTTGAAGCTATTGACAAACTTCAAGAGAGGCTGAAGGTTGTTCCTGGTGAAGATCCTCTAAGTGTGGAGGCTCAAAAGAATGCCACCCTTTTCTTCAATATATTACTCCGAAGCACTTTTGCTAGCAAAAGGGTTTTGGATGAATACAGGCTTACCCGTGAAGCATTTGAGTGGGTTATTGGAGAAATAGAATCACGCTTTCTTCAGTCACTAGTAGCACCTGGTGAAATGATTGGCTGTGTTGCTGCACAGTCCATTGGAGAGCCGGCAACTCAGATGACTCTTAATACCTTCCATTATGCTGGTGTTAGTGCCAAGAATGTCACTCTTGGTGTTCCCAGATTGAGGGAAATCATTAATGTAGCCAAGAGAATCAAAACACCCTCTCTTTCTGTCTATCTAAAACCCGAAGCTAATAAAACCAAGGAGAGGGCGAAGACTGTTCAATGTGCTCTGGAGTATACTACTCTTAGAAGTGTTACACAAGCGACGGAAGTATGGTACGATCCTGACCCCATGAGCACGATTATTGAAGAGGATATTGATTTTGTAAAATCCTATTATGAGATGCCAGATGAGGAAATTGCTCCTGAGAAAATCTCCCCATGGTTGCTTCGAATAGAGTTGAATCGTGAAATGATGGTGGATAAGAAACTAAGCATGGCGAATATTGCCGAGAAGATCAACCTTGAATTCGACGACGACTTGACTTGCATATTTAATGATGATAATGCTGAGAAGCTGATACTTCGTATCCGTATCATGAATGATGAAGCTCCAAAGGGGGAGTTGACTGATGAATCAGCTGAAGACGATGTGTTCTTGAAGAAAATTGAGAGTAATATGCTAACTGAAATGGCTCTTCGAGGAATACCAGACATCAACAAGGTTTTCATTAAATGTGGCAAAGTGAATAAGTTCGATGAGAATGAGGGTTTTAAACCAGAGATGGAGTGGATGTTGGATACAGAAGGTGTCAATCTTTTAGCCGTCATGACACATGAAGATGTTGATGCGAGGAGGACCACAAGCAACCATTTGATTGAAGTTATTGAAGTTCTTGGAATTGAAGCAGTACGGCGTTCTCTTCTGGATGAATTGCGTGTTGTTATATCCTTCGATGGTTCTTATGTTAATTACAGACATCTTGCCATCCTTTGTGACACAATGACTTATCGTGGCCACTTGATGGCTATTACTCGTCATGGTATTAATAGAAATGATACTGGACCAATGATGAGATGCTCATTTGAAGAAACTGTGGATATCTTACTTGATGCTGCAGTATATGCTGAAACTGACCACTTAAGGGGTGTAACTGAAAATATAATGTTGGGTCAGCTGGCCCCCATAGGGACAGGAGGCTGTGCTCTGTATCTCAACGATGAGATGTTGAAGAATGCTATTGAACTCCAGCTGCCTAGTTACATTGACGGTCTGGATTTTGGCATGACACCTTCTCGTTCCCCAATCTCAGGAACTCCTTATCATGAAGGGATGATGTCTCCTAATTATTTGTTGAGCCCAAATCTTCGCCTATCACCTATCAGCGATGCTCAATTTTCACCCTATGTAGGAGGAATGGCATTCTCTCCTACGTCATCTCCAGGCTATAGCCCATCATCTCCAGGCTACAGTCCATCATCCCCTGGCTATAGTCCCACATCTCCTGGTTATAGCCCTACTTCTCCAGGATACAGCCCTACCTCTCCAGGCTACAGTCCTACATCTCCAACTTACAGTCCTAGTTCGCCGGGCTATAGCCCAACTAGTCCTGCATATTCTCCTACAAGTCCATCTTATTCACCCACCTCTCCCAGTTACAGCCCAACCTCTCCAAGTTACAGTCCCACCTCTCCTAGTTACAGCCCCACATCACCAAGTTACAGCCCCACTTCCCCAAGTTACAGCCCTACTTCGCCTGCTTACAGCCCCACTTCACCTGCTTACAGTCCCACTTCCCCTGCATACAGCCCAACTTCACCCTCCTACAGCCCAACTTCGCCCTCCTACAGCCCAACTTCACCCTCCTACAGCCCAACATCACCCTCCTACAGCCCAACATCTCCGTCTTACAGTCCCACATCACCTTCGTACAGCCCCACCTCTCCAGCATATAGCCCCACCTCCCCTGGCTATAGTCCCACGTCACCGAGCTATAGCCCCACTTCTCCTAGCTATAGTCCAACCTCACCTAGTTATAATCCGCAATCAGCTAAATACAGCCCATCACAGGCATACTCACCCAGTAGTCCACGGTTGTCTCCTTCAAGTCCATATAGCCCAACCTCGCCCAATTACAGGTAGTGTGAAGTATTTTTTGGATAGAATTCTTGGGCACCGTGCAAGAGTTTGAATGGGAAACTCCTTTGCATTTATGCTTGTTTTTCTGGTTTGTTCTGATTGCCTTGAATCTAACAAATTTGAACACCTTGTCTTACCTTGCAGCCCAACATCACCATCATATTCCCCTACTTCTCCAGCATATTCTCCATCCAGCCCGACCTACAGTCCTAGCAGGTAAAATTCTACTTCCCTTTCCGTAGATCACTTTGTAACTAACATCTACACTTTCGAATTAAAGCTATGAAGTATGATCACGTTTTTGTCCTTGCATTTCCTTAACCAACTATTTTGCCTTTTCTTTCTTCAGTCCATATAATACAGGACCCAGCCCAGACTACAGCCCTAGTTCTCCACAGTACAGGTTAGCTGATATTAACTTATTGGTCAAACCATTTACATGTTCTTTCCTAGTGAGAATCTGATTGTTTGTCCTCCTTCCAGTCCAAGTGCAGGGTACTCACCTACTGCTCCTGGGTATTCTCCATCATCTACTAGTCAGTACACTCCACAAACAAGTGACAAGGATGATAGGAGTAGAAAGGATGATAGGAACAATTGA

mRNA sequence

ATGGATTTGCGATTCCCTTACTCTCCGGCAGAGGTTGCCAAAGTCAGAATGGTTCAGTTTGGCATTCTTAGTCCCGACGAGATTAGGCAAATGTCCGTGGTACAGATTGAGCACGGTGAAACCACAGAGAGGGGTAAGCCAAAAGTAGCTGGTTTGAGTGACCCACGACTTGGTACAATCGACAGAAAAATGAAGTGTGAAACTTGCACTGCAAATATGGCTGAGTGTCCTGGGCACTTTGGGCACCTCGAGCTTGCCAAACCAATGTTCCATATTGGGTTTATGAAGACCGTGCTCACTATTATGCGTTCTGTGTGCTTCAATTGCTCAAAGATTCTAGTTGACGAGGAAGACCCTAAGTTTAAACAAGCATTGCGGATAAAGAATCCTAAGAATAGGCTTAGAAAGATTTTGGATGCATGCAAGAACAAAACCAAGTGTGAGGGTGGCGATGAAATTGATGTTCAAGGTCAAGATTCAGATCAACCAGTCAAAAAGAGTCGGGGTGGCTGTGGTGCTCAGCAACCTAAGATCTCAATTGAGGGTATGAAGATGACTGCAGAGTACAAGGCCCAAAGGAAAAAAAATGATGATCCGGAGCAGCTGCCTGAGCCTGTGGAAAGAAAACAAACACTTACTGCTGAAAGGGTTCTTGGCATTCTGAAAAGAATAACTGATGAGGATTGCAAACTCTTGGGCCTTAATCCAAAGTATGCTCGGCCTGACTGGATGATTCTGCAAGTCCTTCCAATTCCGCCTCCTCCTGTGAGACCATCAGTTATGATGGACACCTCATCAAGAAGTGAGGACGATCTAACTCATCAGTTGGCAATGATTATAAGGCACAACGAAAACCTCAGGAGACAAGAGAGAAATGGTTCTCCTGCACATATCATTTCAGAGTTTGCGCAACTACTGCAGTTTCATATAGCCACATATTTTGATAATGAATTACCTGGACTACCCAGGGCCACACAGAGATCTGGGAGGCCCATTAAATCTATTTGTAGCAGGCTCAAGGCAAAGGAAGGTCGGATAAGAGGAAATTTGATGGGAAAACGTGTAGATTTTTCAGCACGAACCGTTATTACACCTGATCCAACCATTAATATTGATGAACTGGGGGTGCCTTGGAGTATTGCTCTGAACCTTACGTATCCAGAGACTGTGACACCATATAATATAGAAAGGTTAAAGGAACTTGTTGAATATGGTCCCCATCCTCCACCTGGTAAAACCGGTGCCAAGTACATCATACGAGATGATGGGCAGAGGCTTGATCTTCGTTATCTTAAAAAAAGTAGTGATCATCATTTGGAGCTTGGGTACAAGGTGGAGCGCCATTTAAACGATGGTGATTTTGTACTTTTTAATCGTCAGCCTAGTCTCCATAAAATGTCTATCATGGGACACAGAATCAAGATCATGCCGTACTCAACTTTCCGTCTAAATTTATCTGTCACATCACCTTACAATGCTGATTTTGATGGCGATGAAATGAACATGCATGTTCCTCAGTCATTTGAGACAAGGGCAGAAGTATTGGAACTCATGATGGTTCCCAAATGCATTGTGTCACCTCAGTCGAACCGTCCTGTAATGGGTATAGTGCAAGATACGCTCCTAGGATGCCGTAAAATTACAAAAAGGGACACCTTTATAACGAAGGATGTTTTCATGAATATTTTGATGTGGTGGGAAGATTTTGACGGGAAAATTCCTGCCCCTGCAATTTTAAAGCCACAACCTCTTTGGACGGGAAAGCAAGTTTTTAATCTTATTATACCAAAGCAGATTAATCTCACAAGAACTTCTGCCTGGCATTCTGAATCCGAAACTGGACACATAACTCCTGGAGATACTTTTGTTAGGATTGAGAAAGGGGAGCTACTTTCTGGAACTCTTTGCAAGAAGGCACTTGGAACATCAACTGGAAGTCTTATACATGTTATTTGGGAGGAGGTTGGTCCGGATGCAGCCCGAAAATTTCTGGGTCATACTCAGTGGCTTGTCAATTACTGGCTTTTGCAGAATGCTTTTAGCATTGGGATTGGGGATACAATTGCTGATGCAGCAACCATGGAGAAAATTAATGAAACTATCTCTGCTGCTAAAAATGAAGTGAAAAACCTTATAAAGAAAGCCCAAGAACGGAGTTTAGAGCCTGAACCTGGACGAACAATGATGGATTCATTTGAAAACAAAGTGAATCAAGTCCTGAATAAGGCTCGTGACGATGCTGGTAGTAGTGCGCAAAAAAGTTTGTCCGAGAGTAACAATTTGAAAGCTATGGTCACTGCAGGATCCAAGGGCAGTTTCATCAACATCTCCCAGATGACTGCTTGTGTGGGGCAGCAGAATGTCGAAGGGAAGCGAATACCATTTGGTTTCATTGATCGAACATTGCCCCATTTCACTAAAGATGATTATGGGCCTGAAAGTCGTGGCTTTGTTGAGAATTCATATCTTCGAGGTTTGACTCCACAGGAGTTCTTTTTTCATGCTATGGGTGGTAGGGAAGGTCTTATTGATACTGCAGTCAAGACCTCTGAAACAGGCTACATCCAGAGGAGGCTGGTGAAGGCCATGGAGGATATCATGGTTAAATATGATGGGACTGTTAGAAACTCATTGGGTGATGTTATTCAGTTTCTTTATGGTGAAGATGGTATGGACGCTGTTTGGATAGAATCACAGAAACTTGATTCTTTGAAAATGAAGAAAAAGGAATTTGAGAGGATCTTCAGGTATGAGTTTGAAGATGAAAACTGGAAGCCAAATTACATGTTGCCAGAGCATGTAGAAGATTTGAAAACCATCAGAGAATTCCGCAATGTGTTTGAGGCCGAAGTTCAAAAGCTTGAAGCGGACAGGTATCAATTAGGAACAGAAATTGCAACTACAGGTGAAAACTCTTGGCCAATGCCAGTTAACCTGAAAAGGCTAATTCAGAATGCCCAGAAAACTTTCAAGATTGACTTTCGAAGGGCTTCTGACATGCATCCTATGGAAATTGTTGAAGCTATTGACAAACTTCAAGAGAGGCTGAAGGTTGTTCCTGGTGAAGATCCTCTAAGTGTGGAGGCTCAAAAGAATGCCACCCTTTTCTTCAATATATTACTCCGAAGCACTTTTGCTAGCAAAAGGGTTTTGGATGAATACAGGCTTACCCGTGAAGCATTTGAGTGGGTTATTGGAGAAATAGAATCACGCTTTCTTCAGTCACTAGTAGCACCTGGTGAAATGATTGGCTGTGTTGCTGCACAGTCCATTGGAGAGCCGGCAACTCAGATGACTCTTAATACCTTCCATTATGCTGGTGTTAGTGCCAAGAATGTCACTCTTGGTGTTCCCAGATTGAGGGAAATCATTAATGTAGCCAAGAGAATCAAAACACCCTCTCTTTCTGTCTATCTAAAACCCGAAGCTAATAAAACCAAGGAGAGGGCGAAGACTGTTCAATGTGCTCTGGAGTATACTACTCTTAGAAGTGTTACACAAGCGACGGAAGTATGGTACGATCCTGACCCCATGAGCACGATTATTGAAGAGGATATTGATTTTGTAAAATCCTATTATGAGATGCCAGATGAGGAAATTGCTCCTGAGAAAATCTCCCCATGGTTGCTTCGAATAGAGTTGAATCGTGAAATGATGGTGGATAAGAAACTAAGCATGGCGAATATTGCCGAGAAGATCAACCTTGAATTCGACGACGACTTGACTTGCATATTTAATGATGATAATGCTGAGAAGCTGATACTTCGTATCCGTATCATGAATGATGAAGCTCCAAAGGGGGAGTTGACTGATGAATCAGCTGAAGACGATGTGTTCTTGAAGAAAATTGAGAGTAATATGCTAACTGAAATGGCTCTTCGAGGAATACCAGACATCAACAAGGTTTTCATTAAATGTGGCAAAGTGAATAAGTTCGATGAGAATGAGGGTTTTAAACCAGAGATGGAGTGGATGTTGGATACAGAAGGTGTCAATCTTTTAGCCGTCATGACACATGAAGATGTTGATGCGAGGAGGACCACAAGCAACCATTTGATTGAAGTTATTGAAGTTCTTGGAATTGAAGCAGTACGGCGTTCTCTTCTGGATGAATTGCGTGTTGTTATATCCTTCGATGGTTCTTATGTTAATTACAGACATCTTGCCATCCTTTGTGACACAATGACTTATCGTGGCCACTTGATGGCTATTACTCGTCATGGTATTAATAGAAATGATACTGGACCAATGATGAGATGCTCATTTGAAGAAACTGTGGATATCTTACTTGATGCTGCAGTATATGCTGAAACTGACCACTTAAGGGGTGTAACTGAAAATATAATGTTGGGTCAGCTGGCCCCCATAGGGACAGGAGGCTGTGCTCTGTATCTCAACGATGAGATGTTGAAGAATGCTATTGAACTCCAGCTGCCTAGTTACATTGACGGTCTGGATTTTGGCATGACACCTTCTCGTTCCCCAATCTCAGGAACTCCTTATCATGAAGGGATGATGTCTCCTAATTATTTGTTGAGCCCAAATCTTCGCCTATCACCTATCAGCGATGCTCAATTTTCACCCTATGTAGGAGGAATGGCATTCTCTCCTACGTCATCTCCAGGCTATAGCCCATCATCTCCAGGCTACAGTCCATCATCCCCTGGCTATAGTCCCACATCTCCTGGTTATAGCCCTACTTCTCCAGGATACAGCCCTACCTCTCCAGGCTACAGTCCTACATCTCCAACTTACAGTCCTAGTTCGCCGGGCTATAGCCCAACTAGTCCTGCATATTCTCCTACAAGTCCATCTTATTCACCCACCTCTCCCAGTTACAGCCCAACCTCTCCAAGTTACAGTCCCACCTCTCCTAGTTACAGCCCCACATCACCAAGTTACAGCCCCACTTCCCCAAGTTACAGCCCTACTTCGCCTGCTTACAGCCCCACTTCACCTGCTTACAGTCCCACTTCCCCTGCATACAGCCCAACTTCACCCTCCTACAGCCCAACTTCGCCCTCCTACAGCCCAACTTCACCCTCCTACAGCCCAACATCACCCTCCTACAGCCCAACATCTCCGTCTTACAGTCCCACATCACCTTCGTACAGCCCCACCTCTCCAGCATATAGCCCCACCTCCCCTGGCTATAGTCCCACGTCACCGAGCTATAGCCCCACTTCTCCTAGCTATAGTCCAACCTCACCTAGTTATAATCCGCAATCAGCTAAATACAGCCCATCACAGGCATACTCACCCAGTAGTCCACGGTTGTCTCCTTCAAGTCCATATAGCCCAACCTCGCCCAATTACAGCCCAACATCACCATCATATTCCCCTACTTCTCCAGCATATTCTCCATCCAGCCCGACCTACAGTCCTAGCAGTCCATATAATACAGGACCCAGCCCAGACTACAGCCCTAGTTCTCCACAGTACAGTCCAAGTGCAGGGTACTCACCTACTGCTCCTGGGTATTCTCCATCATCTACTAGTCAGTACACTCCACAAACAAGTGACAAGGATGATAGGAGTAGAAAGGATGATAGGAACAATTGA

Coding sequence (CDS)

ATGGATTTGCGATTCCCTTACTCTCCGGCAGAGGTTGCCAAAGTCAGAATGGTTCAGTTTGGCATTCTTAGTCCCGACGAGATTAGGCAAATGTCCGTGGTACAGATTGAGCACGGTGAAACCACAGAGAGGGGTAAGCCAAAAGTAGCTGGTTTGAGTGACCCACGACTTGGTACAATCGACAGAAAAATGAAGTGTGAAACTTGCACTGCAAATATGGCTGAGTGTCCTGGGCACTTTGGGCACCTCGAGCTTGCCAAACCAATGTTCCATATTGGGTTTATGAAGACCGTGCTCACTATTATGCGTTCTGTGTGCTTCAATTGCTCAAAGATTCTAGTTGACGAGGAAGACCCTAAGTTTAAACAAGCATTGCGGATAAAGAATCCTAAGAATAGGCTTAGAAAGATTTTGGATGCATGCAAGAACAAAACCAAGTGTGAGGGTGGCGATGAAATTGATGTTCAAGGTCAAGATTCAGATCAACCAGTCAAAAAGAGTCGGGGTGGCTGTGGTGCTCAGCAACCTAAGATCTCAATTGAGGGTATGAAGATGACTGCAGAGTACAAGGCCCAAAGGAAAAAAAATGATGATCCGGAGCAGCTGCCTGAGCCTGTGGAAAGAAAACAAACACTTACTGCTGAAAGGGTTCTTGGCATTCTGAAAAGAATAACTGATGAGGATTGCAAACTCTTGGGCCTTAATCCAAAGTATGCTCGGCCTGACTGGATGATTCTGCAAGTCCTTCCAATTCCGCCTCCTCCTGTGAGACCATCAGTTATGATGGACACCTCATCAAGAAGTGAGGACGATCTAACTCATCAGTTGGCAATGATTATAAGGCACAACGAAAACCTCAGGAGACAAGAGAGAAATGGTTCTCCTGCACATATCATTTCAGAGTTTGCGCAACTACTGCAGTTTCATATAGCCACATATTTTGATAATGAATTACCTGGACTACCCAGGGCCACACAGAGATCTGGGAGGCCCATTAAATCTATTTGTAGCAGGCTCAAGGCAAAGGAAGGTCGGATAAGAGGAAATTTGATGGGAAAACGTGTAGATTTTTCAGCACGAACCGTTATTACACCTGATCCAACCATTAATATTGATGAACTGGGGGTGCCTTGGAGTATTGCTCTGAACCTTACGTATCCAGAGACTGTGACACCATATAATATAGAAAGGTTAAAGGAACTTGTTGAATATGGTCCCCATCCTCCACCTGGTAAAACCGGTGCCAAGTACATCATACGAGATGATGGGCAGAGGCTTGATCTTCGTTATCTTAAAAAAAGTAGTGATCATCATTTGGAGCTTGGGTACAAGGTGGAGCGCCATTTAAACGATGGTGATTTTGTACTTTTTAATCGTCAGCCTAGTCTCCATAAAATGTCTATCATGGGACACAGAATCAAGATCATGCCGTACTCAACTTTCCGTCTAAATTTATCTGTCACATCACCTTACAATGCTGATTTTGATGGCGATGAAATGAACATGCATGTTCCTCAGTCATTTGAGACAAGGGCAGAAGTATTGGAACTCATGATGGTTCCCAAATGCATTGTGTCACCTCAGTCGAACCGTCCTGTAATGGGTATAGTGCAAGATACGCTCCTAGGATGCCGTAAAATTACAAAAAGGGACACCTTTATAACGAAGGATGTTTTCATGAATATTTTGATGTGGTGGGAAGATTTTGACGGGAAAATTCCTGCCCCTGCAATTTTAAAGCCACAACCTCTTTGGACGGGAAAGCAAGTTTTTAATCTTATTATACCAAAGCAGATTAATCTCACAAGAACTTCTGCCTGGCATTCTGAATCCGAAACTGGACACATAACTCCTGGAGATACTTTTGTTAGGATTGAGAAAGGGGAGCTACTTTCTGGAACTCTTTGCAAGAAGGCACTTGGAACATCAACTGGAAGTCTTATACATGTTATTTGGGAGGAGGTTGGTCCGGATGCAGCCCGAAAATTTCTGGGTCATACTCAGTGGCTTGTCAATTACTGGCTTTTGCAGAATGCTTTTAGCATTGGGATTGGGGATACAATTGCTGATGCAGCAACCATGGAGAAAATTAATGAAACTATCTCTGCTGCTAAAAATGAAGTGAAAAACCTTATAAAGAAAGCCCAAGAACGGAGTTTAGAGCCTGAACCTGGACGAACAATGATGGATTCATTTGAAAACAAAGTGAATCAAGTCCTGAATAAGGCTCGTGACGATGCTGGTAGTAGTGCGCAAAAAAGTTTGTCCGAGAGTAACAATTTGAAAGCTATGGTCACTGCAGGATCCAAGGGCAGTTTCATCAACATCTCCCAGATGACTGCTTGTGTGGGGCAGCAGAATGTCGAAGGGAAGCGAATACCATTTGGTTTCATTGATCGAACATTGCCCCATTTCACTAAAGATGATTATGGGCCTGAAAGTCGTGGCTTTGTTGAGAATTCATATCTTCGAGGTTTGACTCCACAGGAGTTCTTTTTTCATGCTATGGGTGGTAGGGAAGGTCTTATTGATACTGCAGTCAAGACCTCTGAAACAGGCTACATCCAGAGGAGGCTGGTGAAGGCCATGGAGGATATCATGGTTAAATATGATGGGACTGTTAGAAACTCATTGGGTGATGTTATTCAGTTTCTTTATGGTGAAGATGGTATGGACGCTGTTTGGATAGAATCACAGAAACTTGATTCTTTGAAAATGAAGAAAAAGGAATTTGAGAGGATCTTCAGGTATGAGTTTGAAGATGAAAACTGGAAGCCAAATTACATGTTGCCAGAGCATGTAGAAGATTTGAAAACCATCAGAGAATTCCGCAATGTGTTTGAGGCCGAAGTTCAAAAGCTTGAAGCGGACAGGTATCAATTAGGAACAGAAATTGCAACTACAGGTGAAAACTCTTGGCCAATGCCAGTTAACCTGAAAAGGCTAATTCAGAATGCCCAGAAAACTTTCAAGATTGACTTTCGAAGGGCTTCTGACATGCATCCTATGGAAATTGTTGAAGCTATTGACAAACTTCAAGAGAGGCTGAAGGTTGTTCCTGGTGAAGATCCTCTAAGTGTGGAGGCTCAAAAGAATGCCACCCTTTTCTTCAATATATTACTCCGAAGCACTTTTGCTAGCAAAAGGGTTTTGGATGAATACAGGCTTACCCGTGAAGCATTTGAGTGGGTTATTGGAGAAATAGAATCACGCTTTCTTCAGTCACTAGTAGCACCTGGTGAAATGATTGGCTGTGTTGCTGCACAGTCCATTGGAGAGCCGGCAACTCAGATGACTCTTAATACCTTCCATTATGCTGGTGTTAGTGCCAAGAATGTCACTCTTGGTGTTCCCAGATTGAGGGAAATCATTAATGTAGCCAAGAGAATCAAAACACCCTCTCTTTCTGTCTATCTAAAACCCGAAGCTAATAAAACCAAGGAGAGGGCGAAGACTGTTCAATGTGCTCTGGAGTATACTACTCTTAGAAGTGTTACACAAGCGACGGAAGTATGGTACGATCCTGACCCCATGAGCACGATTATTGAAGAGGATATTGATTTTGTAAAATCCTATTATGAGATGCCAGATGAGGAAATTGCTCCTGAGAAAATCTCCCCATGGTTGCTTCGAATAGAGTTGAATCGTGAAATGATGGTGGATAAGAAACTAAGCATGGCGAATATTGCCGAGAAGATCAACCTTGAATTCGACGACGACTTGACTTGCATATTTAATGATGATAATGCTGAGAAGCTGATACTTCGTATCCGTATCATGAATGATGAAGCTCCAAAGGGGGAGTTGACTGATGAATCAGCTGAAGACGATGTGTTCTTGAAGAAAATTGAGAGTAATATGCTAACTGAAATGGCTCTTCGAGGAATACCAGACATCAACAAGGTTTTCATTAAATGTGGCAAAGTGAATAAGTTCGATGAGAATGAGGGTTTTAAACCAGAGATGGAGTGGATGTTGGATACAGAAGGTGTCAATCTTTTAGCCGTCATGACACATGAAGATGTTGATGCGAGGAGGACCACAAGCAACCATTTGATTGAAGTTATTGAAGTTCTTGGAATTGAAGCAGTACGGCGTTCTCTTCTGGATGAATTGCGTGTTGTTATATCCTTCGATGGTTCTTATGTTAATTACAGACATCTTGCCATCCTTTGTGACACAATGACTTATCGTGGCCACTTGATGGCTATTACTCGTCATGGTATTAATAGAAATGATACTGGACCAATGATGAGATGCTCATTTGAAGAAACTGTGGATATCTTACTTGATGCTGCAGTATATGCTGAAACTGACCACTTAAGGGGTGTAACTGAAAATATAATGTTGGGTCAGCTGGCCCCCATAGGGACAGGAGGCTGTGCTCTGTATCTCAACGATGAGATGTTGAAGAATGCTATTGAACTCCAGCTGCCTAGTTACATTGACGGTCTGGATTTTGGCATGACACCTTCTCGTTCCCCAATCTCAGGAACTCCTTATCATGAAGGGATGATGTCTCCTAATTATTTGTTGAGCCCAAATCTTCGCCTATCACCTATCAGCGATGCTCAATTTTCACCCTATGTAGGAGGAATGGCATTCTCTCCTACGTCATCTCCAGGCTATAGCCCATCATCTCCAGGCTACAGTCCATCATCCCCTGGCTATAGTCCCACATCTCCTGGTTATAGCCCTACTTCTCCAGGATACAGCCCTACCTCTCCAGGCTACAGTCCTACATCTCCAACTTACAGTCCTAGTTCGCCGGGCTATAGCCCAACTAGTCCTGCATATTCTCCTACAAGTCCATCTTATTCACCCACCTCTCCCAGTTACAGCCCAACCTCTCCAAGTTACAGTCCCACCTCTCCTAGTTACAGCCCCACATCACCAAGTTACAGCCCCACTTCCCCAAGTTACAGCCCTACTTCGCCTGCTTACAGCCCCACTTCACCTGCTTACAGTCCCACTTCCCCTGCATACAGCCCAACTTCACCCTCCTACAGCCCAACTTCGCCCTCCTACAGCCCAACTTCACCCTCCTACAGCCCAACATCACCCTCCTACAGCCCAACATCTCCGTCTTACAGTCCCACATCACCTTCGTACAGCCCCACCTCTCCAGCATATAGCCCCACCTCCCCTGGCTATAGTCCCACGTCACCGAGCTATAGCCCCACTTCTCCTAGCTATAGTCCAACCTCACCTAGTTATAATCCGCAATCAGCTAAATACAGCCCATCACAGGCATACTCACCCAGTAGTCCACGGTTGTCTCCTTCAAGTCCATATAGCCCAACCTCGCCCAATTACAGCCCAACATCACCATCATATTCCCCTACTTCTCCAGCATATTCTCCATCCAGCCCGACCTACAGTCCTAGCAGTCCATATAATACAGGACCCAGCCCAGACTACAGCCCTAGTTCTCCACAGTACAGTCCAAGTGCAGGGTACTCACCTACTGCTCCTGGGTATTCTCCATCATCTACTAGTCAGTACACTCCACAAACAAGTGACAAGGATGATAGGAGTAGAAAGGATGATAGGAACAATTGA

Protein sequence

MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISIEGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRSRKDDRNN*

Homology

[Close]

BLAST of Chy6G127870 vs. ExPASy Swiss-Prot
Match: P18616 (DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana OX=3702 GN=NRPB1 PE=1 SV=3)

HSP 1 Score: 3208.3 bits (8317), Expect = 0.0e+00
Identity = 1627/1851 (87.90%), Postives = 1736/1851 (93.79%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MD RFP+SPAEV+KVR+VQFGILSPDEIRQMSV+ +EH ETTE+GKPKV GLSD RLGTI
Sbjct: 1    MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRK+KCETC ANMAECPGHFG+LELAKPM+H+GFMKTVL+IMR VCFNCSKIL DEE+ K
Sbjct: 61   DRKVKCETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK 120

Query: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEI-DVQGQDSDQPVKKSRGGCGAQQPKIS 180
            FKQA++IKNPKNRL+KILDACKNKTKC+GGD+I DVQ   +D+PVKKSRGGCGAQQPK++
Sbjct: 121  FKQAMKIKNPKNRLKKILDACKNKTKCDGGDDIDDVQSHSTDEPVKKSRGGCGAQQPKLT 180

Query: 181  IEGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYA 240
            IEGMKM AEYK QRKKND+P+QLPEP ERKQTL A+RVL +LKRI+D DC+LLG NPK+A
Sbjct: 181  IEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFA 240

Query: 241  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHII 300
            RPDWMIL+VLPIPPPPVRPSVMMD +SRSEDDLTHQLAMIIRHNENL+RQE+NG+PAHII
Sbjct: 241  RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII 300

Query: 301  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360
            SEF QLLQFHIATYFDNELPG PRATQ+SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 301  SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360

Query: 361  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 420
            RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELV+YGPHPPPGKTGAKYII
Sbjct: 361  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII 420

Query: 421  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 480
            RDDGQRLDLRYLKKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRI+IMPYS
Sbjct: 421  RDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYS 480

Query: 481  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 540
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 481  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 540

Query: 541  TLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQI 600
            TLLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAPAILKP+PLWTGKQVFNLIIPKQI
Sbjct: 541  TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 600

Query: 601  NLTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDA 660
            NL R SAWH+++ETG ITPGDT VRIE+GELL+GTLCKK LGTS GSL+HVIWEEVGPDA
Sbjct: 601  NLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDA 660

Query: 661  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERS 720
            ARKFLGHTQWLVNYWLLQN F+IGIGDTIAD++TMEKINETIS AK  VK+LI++ Q + 
Sbjct: 661  ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKE 720

Query: 721  LEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 780
            L+PEPGRTM D+FEN+VNQVLNKARDDAGSSAQKSL+E+NNLKAMVTAGSKGSFINISQM
Sbjct: 721  LDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM 780

Query: 781  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840
            TACVGQQNVEGKRIPFGF  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 781  TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840

Query: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900

Query: 901  KLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRY 960
            KLDSLKMKK EF+R F+YE +DENW P Y+  EH+EDLK IRE R+VF+AE  KLE DR+
Sbjct: 901  KLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRF 960

Query: 961  QLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVV 1020
            QLGTEIAT G+++WP+PVN+KR I NAQKTFKID R+ SDMHP+EIV+A+DKLQERL VV
Sbjct: 961  QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV 1020

Query: 1021 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAP 1080
            PG+D LSVEAQKNATLFFNILLRST ASKRVL+EY+L+REAFEWVIGEIESRFLQSLVAP
Sbjct: 1021 PGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAP 1080

Query: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140

Query: 1141 KPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEE 1200
             PEA+K+KE AKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED +FV+SYYEMPDE+
Sbjct: 1141 TPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDED 1200

Query: 1201 IAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1260
            ++P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNA+KLILRIRI
Sbjct: 1201 VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRI 1260

Query: 1261 MNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFK 1320
            MNDE PKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK  + ++FDE  GFK
Sbjct: 1261 MNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGFK 1320

Query: 1321 PEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1380
               EWMLDTEGVNLLAVM HEDVD +RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1321 TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1380

Query: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1440
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAA YAETD
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD 1440

Query: 1441 HLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGT 1500
             LRGVTENIMLGQLAPIGTG C LYLNDEMLKNAIELQLPSY+DGL+FGMTP+RSP+SGT
Sbjct: 1441 CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSGT 1500

Query: 1501 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 1560
            PYHEGMMSPNYLLSPN+RLSP+SDAQFSPYVGGMAFSP+       SSPGYSPSSPGYSP
Sbjct: 1501 PYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPS-------SSPGYSPSSPGYSP 1560

Query: 1561 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1620
            TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS
Sbjct: 1561 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1620

Query: 1621 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1680
            YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA       YSPTSPSYSPT
Sbjct: 1621 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA-------YSPTSPSYSPT 1680

Query: 1681 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSY 1740
            SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSY PTSPSY
Sbjct: 1681 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSY 1740

Query: 1741 NPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPY 1800
            NPQSAKYSPS AYSPS+ RLSP+SPYSPTSPNYSPTSPSYSPTSP+YSPSSPTYSPSSPY
Sbjct: 1741 NPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPY 1800

Query: 1801 NTGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRSRKDD 1851
            ++G SPD       YSPSAGYSPT PGYSPSST QYTP   DK D++ K D
Sbjct: 1801 SSGASPD-------YSPSAGYSPTLPGYSPSSTGQYTPHEGDKKDKTGKKD 1830

[Close]

BLAST of Chy6G127870 vs. ExPASy Swiss-Prot
Match: P35084 (DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium discoideum OX=44689 GN=polr2a PE=2 SV=2)

HSP 1 Score: 2163.7 bits (5605), Expect = 0.0e+00
Identity = 1134/1755 (64.62%), Postives = 1378/1755 (78.52%), Query Frame = 0


Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKM 64
            FP S AE+ KV+ VQFGILSPDEIR MSV ++EH ET E GKPK  GL DP +GTID+  
Sbjct: 5    FPPSSAELRKVKRVQFGILSPDEIRNMSVARVEHPETYENGKPKAGGLLDPAMGTIDKTQ 64

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQA 124
            +C+TC+  MAECPGHFGH+ELAKP+FHIGF+ TVL I+R VC++CSK+L D  +  F+QA
Sbjct: 65   RCQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDTNEHSFRQA 124

Query: 125  LRIKNPKNRLRKILDACKNKTKCE-GGDE-----IDVQGQDSDQPVKKSRGGCGAQQPKI 184
            L+I+N K+RL  ++D CKNK  C  GG+E     +    ++ D+PVK   GGCG   PKI
Sbjct: 125  LKIRNQKHRLNAVVDCCKNKKVCAIGGEEEEEHDLSKTDEELDKPVK--HGGCGNVLPKI 184

Query: 185  SIEGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKY 244
            + E +K+  E+K         +   E +E+K  L+AERVL ILKRI DED + +G+NP +
Sbjct: 185  TKEDLKIIVEFK---------DVTDESIEKKSVLSAERVLNILKRIKDEDSRAMGINPDW 244

Query: 245  ARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHI 304
            AR DWMI  VLP+PPPPVRPS+MMDTS+R EDDLTH+LA I++ N  L+RQE+NG+PAHI
Sbjct: 245  ARADWMIATVLPVPPPPVRPSIMMDTSTRGEDDLTHKLADIVKANRELQRQEKNGAPAHI 304

Query: 305  ISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 364
            I+E  Q LQFH+ATY DNE+PGLP+A QRSGRP+KSI  RLK KEGRIRGNLMGKRVDFS
Sbjct: 305  IAEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDFS 364

Query: 365  ARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 424
            ARTVIT DP ++ID++GVP SIALNLTYPETVTP+NI++++EL+  GP   P   GAKYI
Sbjct: 365  ARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHP---GAKYI 424

Query: 425  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 484
            IR+DG R DLR++KK SD HLE GYKVERH+NDGD V+FNRQPSLHKMS+MGHRIK+MPY
Sbjct: 425  IREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPY 484

Query: 485  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 544
            STFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV+E+MMVP+ IVSPQSNRPVMGIVQ
Sbjct: 485  STFRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQ 544

Query: 545  DTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQ 604
            DTLLG R  TKRD F+ KD+ MNILMW   +DGK+P PAILKP+ LWTGKQ+F+LIIP  
Sbjct: 545  DTLLGSRLFTKRDCFMEKDLVMNILMWLPSWDGKVPPPAILKPKQLWTGKQLFSLIIP-D 604

Query: 605  INLTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPD 664
            INL R ++ H++ E    + GDT V IE+GELL+G LCK++LG + GS+IHV+  E G D
Sbjct: 605  INLIRFTSTHNDKEPNECSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHGHD 664

Query: 665  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQER 724
              R F+  TQ +VN+WL+   F++GIGDTIAD+ATM K+  TIS+AKN+VK LI KAQ +
Sbjct: 665  TCRLFIDQTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNK 724

Query: 725  SLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 784
              E +PG++++++FE KVNQVLNKARD AGSSAQ SLSE NNLKAMVTAGSKGSFINISQ
Sbjct: 725  QFECQPGKSVIETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQ 784

Query: 785  MTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 844
            M ACVGQQNVEGKRIPFGF  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG
Sbjct: 785  MMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 844

Query: 845  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 904
            REGLIDTAVKTSETGYIQRRLVKAMED+ +KYD TVRNSLGDVIQF YGEDG+D  ++E+
Sbjct: 845  REGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFVEN 904

Query: 905  QKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADR 964
            Q +DSL+    E ER++R++ +  ++   +M P  +E ++     R+  E E +++++DR
Sbjct: 905  QSIDSLRKDNTELERMYRHQVDKPDYGDGWMDPLVIEHVRNDSLTRDTLEKEFERIKSDR 964

Query: 965  YQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKV 1024
              L  EI  +GE +WP+PVNL+RLI NAQK F ID RR SD++P  +V  I+KL  RLK+
Sbjct: 965  SLLRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSDLNPAVVVLEIEKLVARLKI 1024

Query: 1025 VPGEDPLS---------VEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIE 1084
            +   D             E   NAT+ F+IL+RSTFASKRVL E+RLT +AF WV GEIE
Sbjct: 1025 IATADTTEDDENFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIE 1084

Query: 1085 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKR 1144
            S+FLQ+L  PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN+AK+
Sbjct: 1085 SKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQ 1144

Query: 1145 IKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFV 1204
            +KTPSL++YLKP   +  +RAK V+  LEYTTL +VT ATE++YDPDP +TII ED +FV
Sbjct: 1145 VKTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAEFV 1204

Query: 1205 KSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDN 1264
             SY+E+PDEEI    +SPWLLRIEL+R M+ DKKL+MA+I + +  +F   L CIF+DDN
Sbjct: 1205 NSYFELPDEEIDVHSMSPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIFSDDN 1264

Query: 1265 AEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKC-GK 1324
            AEKLILRIR++  +  KG   D   +DD FL++IESNML+EM LRGI  I KVF++   K
Sbjct: 1265 AEKLILRIRMVESQETKGTDND---DDDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDK 1324

Query: 1325 VNKFDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSL 1384
            + K  EN GF    EW+LDT+GV+LL VM+H DVD  RTTSN ++E+I+VLGIEAVR +L
Sbjct: 1325 IPKVTENGGFGVREEWILDTDGVSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRNAL 1384

Query: 1385 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1444
            L ELR VISFDGSYVNYRHLAIL D MTYRGHLMAITRHGINR +TGP+MRCSFEETV+I
Sbjct: 1385 LKELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEI 1444

Query: 1445 LLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLP-----SYID 1504
            L+DAA+++ETD ++GVTENI+LGQL P+GTG   ++LN +M+KNA  + LP     SY D
Sbjct: 1445 LMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPEPSNVSYPD 1504

Query: 1505 GLDFGMTPSRSPISG--TPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSP 1564
                  TPS S   G  TP+H    +P         LSP ++     + G  + S  +SP
Sbjct: 1505 -TPGSQTPSYSYGDGSTTPFHNPYDAP---------LSPFNET----FRGDFSPSAMNSP 1564

Query: 1565 GYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSP 1624
            GY+ ++  Y  SS  Y P SP YSPTSP YSPTSP YSPTSP+YSP+SP YSPTSP+YSP
Sbjct: 1565 GYN-ANKSYG-SSYQYFPQSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1624

Query: 1625 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1684
            TSPSYSPTSP YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTSP+
Sbjct: 1625 TSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1684

Query: 1685 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1737
            YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP+SPSYSP+SP+YSP+SP YSP+
Sbjct: 1685 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSYSPS 1724

[Close]

BLAST of Chy6G127870 vs. ExPASy Swiss-Prot
Match: P11414 (DNA-directed RNA polymerase II subunit RPB1 OS=Cricetulus griseus OX=10029 GN=POLR2A PE=1 SV=2)

HSP 1 Score: 2099.7 bits (5439), Expect = 0.0e+00
Identity = 1138/1919 (59.30%), Postives = 1428/1919 (74.41%), Query Frame = 0


Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKVAGLSDPRLGTIDRKMK 67
            S   +  ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK+ GL DPR G I+R  +
Sbjct: 11   SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70

Query: 68   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQAL 127
            C+TC  NM ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+LVD  +PK K  L
Sbjct: 71   CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130

Query: 128  RIK--NPKNRLRKILDACKNKTKCEGGDEID----VQGQDSDQPV--KKSRGGCGAQQPK 187
                  PK RL  + D CK K  CEGG+E+D    V+  + D+ +  +K  GGCG  QP+
Sbjct: 131  AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190

Query: 188  ISIEGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPK 247
            I   G+++ AE+K     N+D +      E+K  L+ ERV  I KRI+DE+C +LG+ P+
Sbjct: 191  IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 250

Query: 248  YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAH 307
            YARP+WMI+ VLP+PP  VRP+V+M  S+R++DDLTH+LA I++ N  LRR E+NG+ AH
Sbjct: 251  YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 310

Query: 308  IISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 367
            +I+E  +LLQFH+AT  DNELPGLPRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDF
Sbjct: 311  VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 370

Query: 368  SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 427
            SARTVITPDP ++ID++GVP SIA N+T+ E VTP+NI+RL+ELV  G    P   GAKY
Sbjct: 371  SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYP---GAKY 430

Query: 428  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 487
            IIRD+G R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 431  IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 490

Query: 488  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 547
            +STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIV
Sbjct: 491  WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 550

Query: 548  QDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPK 607
            QDTL   RK TKRD F+ +   MN+LM+   +DGK+P PAILKP+PLWTGKQ+F+LIIP 
Sbjct: 551  QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 610

Query: 608  QINLTRTSAWHSESETG----HITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWE 667
             IN  RT + H + E      HI+PGDT V +E GEL+ G LCKK+LGTS GSL+H+ + 
Sbjct: 611  HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 670

Query: 668  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIK 727
            E+G D  R F  + Q ++N WLL    +IGIGD+IAD+ T + I  TI  AK +V  +I+
Sbjct: 671  EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 730

Query: 728  KAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSF 787
            KA    LEP PG T+  +FEN+VN++LN ARD  GSSAQKSLSE NN K+MV +G+KGS 
Sbjct: 731  KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 790

Query: 788  INISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 847
            INISQ+ A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 791  INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 850

Query: 848  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 907
            HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+  
Sbjct: 851  HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 910

Query: 908  VWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQK 967
              +E Q L +LK   K FE+ FR+++ +E      +  + V+D+ +    +N  E E ++
Sbjct: 911  ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 970

Query: 968  LEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQ 1027
            +  DR  L   I  TG++   +P NL R+I NAQK F I+ R  SD+HP+++VE + +L 
Sbjct: 971  MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1030

Query: 1028 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFL 1087
            ++L +V G+DPLS +AQ+NATL FNI LRST  S+R+ +E+RL+ EAF+W++GEIES+F 
Sbjct: 1031 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1090

Query: 1088 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP 1147
            Q++  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTP
Sbjct: 1091 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1150

Query: 1148 SLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYY 1207
            SL+V+L  ++ +  ERAK + C LE+TTLR VT  T ++YDP+P ST++ ED ++V  YY
Sbjct: 1151 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1210

Query: 1208 EMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKL 1267
            EMPD ++A  +ISPWLLR+EL+R+ M D+KL+M  IAEKIN  F DDL CIFNDDNAEKL
Sbjct: 1211 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1270

Query: 1268 ILRIRIMNDEAPKGELTDE---SAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVN 1327
            +LRIRIMN +  K +  +E     +DDVFL+ IESNMLT+M L+GI  I+KV++   + +
Sbjct: 1271 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTD 1330

Query: 1328 K-----FDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVR 1387
                    E+  FK   EW+L+T+GV+L+ V++ +DVD  RTTSN ++E+  VLGIEAVR
Sbjct: 1331 NKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVR 1390

Query: 1388 RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1447
            ++L  EL  VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEET
Sbjct: 1391 KALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEET 1450

Query: 1448 VDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGL 1507
            VD+L++AA + E+D ++GV+ENIMLGQLAP GTG   L L+ E  K  +E  +P+ I GL
Sbjct: 1451 VDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGME--IPTNIPGL 1510

Query: 1508 D--------FGMTPSRSPISG-----TPYHEGMMSPNYLLSPNLRL-------------- 1567
                     FG  P  SP+ G     TP+++G        SP++                
Sbjct: 1511 GAAGPTGMFFGSAP--SPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAA 1570

Query: 1568 -------------------SPISDAQFSPYV--GGMAFSPTSSP-----------GYSPS 1627
                               SP S    SPY+   G A SP+ SP           GY+P 
Sbjct: 1571 SDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQ 1630

Query: 1628 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1687
            SP YSP+SP YSPTSP YSPTSP YSPTSP YSPTSP+YSP+SP YSPTSP+YSPTSPSY
Sbjct: 1631 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1690

Query: 1688 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1747
            SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTS
Sbjct: 1691 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750

Query: 1748 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1807
            PSYSPTSPSYSPTSP+YSPTSP+Y+PTSPSYSPTSPSYSPTSP Y+PTSP YSPTSPSYS
Sbjct: 1751 PSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYS 1810

Query: 1808 PTSPSYSPTSPSYNPQSAKYSP-SQAYSPSSPRLSPSSP-YSPTSPNYSPTSPSYSPTSP 1843
            PTSPSYSPTSPSY+P S +Y+P S  Y+PSSP  SPSSP YSPTSP Y+PTSPSYSP+SP
Sbjct: 1811 PTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSP 1870

[Close]

BLAST of Chy6G127870 vs. ExPASy Swiss-Prot
Match: P08775 (DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus OX=10090 GN=Polr2a PE=1 SV=3)

HSP 1 Score: 2099.7 bits (5439), Expect = 0.0e+00
Identity = 1138/1919 (59.30%), Postives = 1428/1919 (74.41%), Query Frame = 0


Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKVAGLSDPRLGTIDRKMK 67
            S   +  ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK+ GL DPR G I+R  +
Sbjct: 11   SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70

Query: 68   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQAL 127
            C+TC  NM ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+LVD  +PK K  L
Sbjct: 71   CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130

Query: 128  RIK--NPKNRLRKILDACKNKTKCEGGDEID----VQGQDSDQPV--KKSRGGCGAQQPK 187
                  PK RL  + D CK K  CEGG+E+D    V+  + D+ +  +K  GGCG  QP+
Sbjct: 131  AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190

Query: 188  ISIEGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPK 247
            I   G+++ AE+K     N+D +      E+K  L+ ERV  I KRI+DE+C +LG+ P+
Sbjct: 191  IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 250

Query: 248  YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAH 307
            YARP+WMI+ VLP+PP  VRP+V+M  S+R++DDLTH+LA I++ N  LRR E+NG+ AH
Sbjct: 251  YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 310

Query: 308  IISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 367
            +I+E  +LLQFH+AT  DNELPGLPRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDF
Sbjct: 311  VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 370

Query: 368  SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 427
            SARTVITPDP ++ID++GVP SIA N+T+ E VTP+NI+RL+ELV  G    P   GAKY
Sbjct: 371  SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYP---GAKY 430

Query: 428  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 487
            IIRD+G R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 431  IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 490

Query: 488  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 547
            +STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIV
Sbjct: 491  WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 550

Query: 548  QDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPK 607
            QDTL   RK TKRD F+ +   MN+LM+   +DGK+P PAILKP+PLWTGKQ+F+LIIP 
Sbjct: 551  QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 610

Query: 608  QINLTRTSAWHSESETG----HITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWE 667
             IN  RT + H + E      HI+PGDT V +E GEL+ G LCKK+LGTS GSL+H+ + 
Sbjct: 611  HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 670

Query: 668  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIK 727
            E+G D  R F  + Q ++N WLL    +IGIGD+IAD+ T + I  TI  AK +V  +I+
Sbjct: 671  EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 730

Query: 728  KAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSF 787
            KA    LEP PG T+  +FEN+VN++LN ARD  GSSAQKSLSE NN K+MV +G+KGS 
Sbjct: 731  KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 790

Query: 788  INISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 847
            INISQ+ A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 791  INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 850

Query: 848  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 907
            HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+  
Sbjct: 851  HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 910

Query: 908  VWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQK 967
              +E Q L +LK   K FE+ FR+++ +E      +  + V+D+ +    +N  E E ++
Sbjct: 911  ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 970

Query: 968  LEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQ 1027
            +  DR  L   I  TG++   +P NL R+I NAQK F I+ R  SD+HP+++VE + +L 
Sbjct: 971  MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1030

Query: 1028 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFL 1087
            ++L +V G+DPLS +AQ+NATL FNI LRST  S+R+ +E+RL+ EAF+W++GEIES+F 
Sbjct: 1031 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1090

Query: 1088 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP 1147
            Q++  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTP
Sbjct: 1091 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1150

Query: 1148 SLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYY 1207
            SL+V+L  ++ +  ERAK + C LE+TTLR VT  T ++YDP+P ST++ ED ++V  YY
Sbjct: 1151 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1210

Query: 1208 EMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKL 1267
            EMPD ++A  +ISPWLLR+EL+R+ M D+KL+M  IAEKIN  F DDL CIFNDDNAEKL
Sbjct: 1211 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1270

Query: 1268 ILRIRIMNDEAPKGELTDE---SAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVN 1327
            +LRIRIMN +  K +  +E     +DDVFL+ IESNMLT+M L+GI  I+KV++   + +
Sbjct: 1271 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTD 1330

Query: 1328 K-----FDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVR 1387
                    E+  FK   EW+L+T+GV+L+ V++ +DVD  RTTSN ++E+  VLGIEAVR
Sbjct: 1331 NKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVR 1390

Query: 1388 RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1447
            ++L  EL  VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEET
Sbjct: 1391 KALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEET 1450

Query: 1448 VDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGL 1507
            VD+L++AA + E+D ++GV+ENIMLGQLAP GTG   L L+ E  K  +E  +P+ I GL
Sbjct: 1451 VDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGME--IPTNIPGL 1510

Query: 1508 D--------FGMTPSRSPISG-----TPYHEGMMSPNYLLSPNLRL-------------- 1567
                     FG  P  SP+ G     TP+++G        SP++                
Sbjct: 1511 GAAGPTGMFFGSAP--SPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAA 1570

Query: 1568 -------------------SPISDAQFSPYV--GGMAFSPTSSP-----------GYSPS 1627
                               SP S    SPY+   G A SP+ SP           GY+P 
Sbjct: 1571 SDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQ 1630

Query: 1628 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1687
            SP YSP+SP YSPTSP YSPTSP YSPTSP YSPTSP+YSP+SP YSPTSP+YSPTSPSY
Sbjct: 1631 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1690

Query: 1688 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1747
            SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTS
Sbjct: 1691 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750

Query: 1748 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1807
            PSYSPTSPSYSPTSP+YSPTSP+Y+PTSPSYSPTSPSYSPTSP Y+PTSP YSPTSPSYS
Sbjct: 1751 PSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYS 1810

Query: 1808 PTSPSYSPTSPSYNPQSAKYSP-SQAYSPSSPRLSPSSP-YSPTSPNYSPTSPSYSPTSP 1843
            PTSPSYSPTSPSY+P S +Y+P S  Y+PSSP  SPSSP YSPTSP Y+PTSPSYSP+SP
Sbjct: 1811 PTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSP 1870

[Close]

BLAST of Chy6G127870 vs. ExPASy Swiss-Prot
Match: P24928 (DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens OX=9606 GN=POLR2A PE=1 SV=2)

HSP 1 Score: 2097.8 bits (5434), Expect = 0.0e+00
Identity = 1137/1919 (59.25%), Postives = 1427/1919 (74.36%), Query Frame = 0


Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKVAGLSDPRLGTIDRKMK 67
            S   +  ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK+ GL DPR G I+R  +
Sbjct: 11   SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70

Query: 68   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQAL 127
            C+TC  NM ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+LVD  +PK K  L
Sbjct: 71   CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130

Query: 128  RIK--NPKNRLRKILDACKNKTKCEGGDEID----VQGQDSDQPV--KKSRGGCGAQQPK 187
                  PK RL  + D CK K  CEGG+E+D    V+  + D+ +  +K  GGCG  QP+
Sbjct: 131  AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190

Query: 188  ISIEGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPK 247
            I   G+++ AE+K     N+D +      E+K  L+ ERV  I KRI+DE+C +LG+ P+
Sbjct: 191  IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 250

Query: 248  YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAH 307
            YARP+WMI+ VLP+PP  VRP+V+M  S+R++DDLTH+LA I++ N  LRR E+NG+ AH
Sbjct: 251  YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 310

Query: 308  IISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 367
            +I+E  +LLQFH+AT  DNELPGLPRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDF
Sbjct: 311  VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 370

Query: 368  SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 427
            SARTVITPDP ++ID++GVP SIA N+T+ E VTP+NI+RL+ELV  G    P   GAKY
Sbjct: 371  SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYP---GAKY 430

Query: 428  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 487
            IIRD+G R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 431  IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 490

Query: 488  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 547
            +STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIV
Sbjct: 491  WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 550

Query: 548  QDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPK 607
            QDTL   RK TKRD F+ +   MN+LM+   +DGK+P PAILKP+PLWTGKQ+F+LIIP 
Sbjct: 551  QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 610

Query: 608  QINLTRTSAWHSESETG----HITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWE 667
             IN  RT + H + E      HI+PGDT V +E GEL+ G LCKK+LGTS GSL+H+ + 
Sbjct: 611  HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 670

Query: 668  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIK 727
            E+G D  R F  + Q ++N WLL    +IGIGD+IAD+ T + I  TI  AK +V  +I+
Sbjct: 671  EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 730

Query: 728  KAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSF 787
            KA    LEP PG T+  +FEN+VN++LN ARD  GSSAQKSLSE NN K+MV +G+KGS 
Sbjct: 731  KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 790

Query: 788  INISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 847
            INISQ+ A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 791  INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 850

Query: 848  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 907
            HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+  
Sbjct: 851  HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 910

Query: 908  VWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQK 967
              +E Q L +LK   K FE+ FR+++ +E      +  + V+D+ +    +N  E E ++
Sbjct: 911  ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 970

Query: 968  LEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQ 1027
            +  DR  L   I  TG++   +P NL R+I NAQK F I+ R  SD+HP+++VE + +L 
Sbjct: 971  MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1030

Query: 1028 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFL 1087
            ++L +V G+DPLS +AQ+NATL FNI LRST  S+R+ +E+RL+ EAF+W++GEIES+F 
Sbjct: 1031 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1090

Query: 1088 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP 1147
            Q++  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTP
Sbjct: 1091 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1150

Query: 1148 SLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYY 1207
            SL+V+L  ++ +  ERAK + C LE+TTLR VT  T ++YDP+P ST++ ED ++V  YY
Sbjct: 1151 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1210

Query: 1208 EMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKL 1267
            EMPD ++A  +ISPWLLR+EL+R+ M D+KL+M  IAEKIN  F DDL CIFNDDNAEKL
Sbjct: 1211 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1270

Query: 1268 ILRIRIMNDEAPKGELTDE---SAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVN 1327
            +LRIRIMN +  K +  +E     +DDVFL+ IESNMLT+M L+GI  I+KV++   + +
Sbjct: 1271 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTD 1330

Query: 1328 K-----FDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVR 1387
                    E+  FK   EW+L+T+GV+L+ V++ +DVD  RTTSN ++E+  VLGIEAVR
Sbjct: 1331 NKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVR 1390

Query: 1388 RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1447
            ++L  EL  VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEET
Sbjct: 1391 KALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEET 1450

Query: 1448 VDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGL 1507
            VD+L++AA + E+D ++GV+ENIMLGQLAP GTG   L L+ E  K  +E  +P+ I GL
Sbjct: 1451 VDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGME--IPTNIPGL 1510

Query: 1508 D--------FGMTPSRSPISG-----TPYHEGMMSPNYLLSPNLRL-------------- 1567
                     FG  P  SP+ G     TP+++G        SP++                
Sbjct: 1511 GAAGPTGMFFGSAP--SPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAA 1570

Query: 1568 -------------------SPISDAQFSPYV--GGMAFSPTSSP-----------GYSPS 1627
                               SP S    SPY+   G A SP+ SP           GY+P 
Sbjct: 1571 SDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQ 1630

Query: 1628 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1687
            SP YSP+SP YSPTSP YSPTSP YSPTSP YSPTSP+YSP+SP YSPTSP+YSPTSPSY
Sbjct: 1631 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1690

Query: 1688 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1747
            SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTS
Sbjct: 1691 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750

Query: 1748 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1807
            PSYSPTSPSYSPTSP+YSPTSP+Y+PTSPSYSPTSPSYSPTSP Y+PTSP YSPTSPSYS
Sbjct: 1751 PSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYS 1810

Query: 1808 PTSPSYSPTSPSYNPQSAKYSP-SQAYSPSSPRLSPSSP-YSPTSPNYSPTSPSYSPTSP 1843
            PTSPSYSPTSPSY+P S +Y+P S  Y+PSSP  SPSSP YSP SP Y+PTSPSYSP+SP
Sbjct: 1811 PTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPASPKYTPTSPSYSPSSP 1870

[Close]

BLAST of Chy6G127870 vs. ExPASy TrEMBL
Match: A0A0A0L655 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G002510 PE=3 SV=1)

HSP 1 Score: 3608.9 bits (9357), Expect = 0.0e+00
Identity = 1851/1867 (99.14%), Postives = 1851/1867 (99.14%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
            FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180

Query: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
            EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR
Sbjct: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMN LMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
            LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
            LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
            PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
            NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA--------------YSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA              YSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1740
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1740

Query: 1741 PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY 1800
            PTSPSYSPTSPSYNPQSAKYSPSQAY PSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY
Sbjct: 1741 PTSPSYSPTSPSYNPQSAKYSPSQAYLPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY 1800

Query: 1801 SPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRS 1854
            SPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRS
Sbjct: 1801 SPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRS 1860

[Close]

BLAST of Chy6G127870 vs. ExPASy TrEMBL
Match: A0A5D3CJC8 (DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00440 PE=3 SV=1)

HSP 1 Score: 3597.0 bits (9326), Expect = 0.0e+00
Identity = 1848/1888 (97.88%), Postives = 1851/1888 (98.04%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEI-------------------------------- 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEI                                
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIVILLPTPPQFSFILSDSVLILRGCSWVKNALH 60

Query: 61   ---RQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL 120
               RQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL
Sbjct: 61   LYERQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL 120

Query: 121  AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT 180
            AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT
Sbjct: 121  AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT 180

Query: 181  KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISIEGMKMTAEYKAQRKKNDDPEQLPEP 240
            KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKI+IEGMKMTAEYKAQRKKNDD EQLPEP
Sbjct: 181  KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITIEGMKMTAEYKAQRKKNDDQEQLPEP 240

Query: 241  VERKQTLTAERVLGILKRITDEDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 300
            VERKQTLTAERVLGILKRITD+DCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS
Sbjct: 241  VERKQTLTAERVLGILKRITDDDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 300

Query: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360
            SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT
Sbjct: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360

Query: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 420
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT
Sbjct: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 420

Query: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 480
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV
Sbjct: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 480

Query: 481  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 540
            ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 481  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 540

Query: 541  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMW 600
            QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMW
Sbjct: 541  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMW 600

Query: 601  WEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHITPGDTFVRI 660
            WEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGH+TPGDTFVRI
Sbjct: 601  WEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHVTPGDTFVRI 660

Query: 661  EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 720
            EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG
Sbjct: 661  EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 720

Query: 721  DTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD 780
            DTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD
Sbjct: 721  DTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD 780

Query: 781  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 840
            DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF
Sbjct: 781  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 840

Query: 841  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 900
            TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 841  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 900

Query: 901  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWK 960
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWK
Sbjct: 901  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWK 960

Query: 961  PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQN 1020
            PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQN
Sbjct: 961  PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQN 1020

Query: 1021 AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF 1080
            AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF
Sbjct: 1021 AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF 1080

Query: 1081 ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1140
            ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1081 ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1140

Query: 1141 AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSV 1200
            AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSV
Sbjct: 1141 AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSV 1200

Query: 1201 TQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS 1260
            TQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS
Sbjct: 1201 TQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS 1260

Query: 1261 MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIES 1320
            MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIES
Sbjct: 1261 MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIES 1320

Query: 1321 NMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDAR 1380
            NMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVM HEDVDAR
Sbjct: 1321 NMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMCHEDVDAR 1380

Query: 1381 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1440
            RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1381 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1440

Query: 1441 RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL 1500
            RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL
Sbjct: 1441 RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL 1500

Query: 1501 NDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQ 1560
            NDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQ
Sbjct: 1501 NDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQ 1560

Query: 1561 FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1620
            FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY
Sbjct: 1561 FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1620

Query: 1621 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1680
            SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1680

Query: 1681 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1740
            PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
Sbjct: 1681 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1740

Query: 1741 PTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPY 1800
            PTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPY
Sbjct: 1741 PTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPY 1800

Query: 1801 SPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYSPTAP 1854
            SPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYSPTAP
Sbjct: 1801 SPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYSPTAP 1860

[Close]

BLAST of Chy6G127870 vs. ExPASy TrEMBL
Match: A0A5A7UGR7 (DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold344G00420 PE=3 SV=1)

HSP 1 Score: 3591.2 bits (9311), Expect = 0.0e+00
Identity = 1848/1892 (97.67%), Postives = 1851/1892 (97.83%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEI-------------------------------- 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEI                                
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIVILLPTPPQFSFILSDSVLILRGCSWVKNALH 60

Query: 61   ---RQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL 120
               RQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL
Sbjct: 61   LYERQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL 120

Query: 121  AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT 180
            AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT
Sbjct: 121  AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT 180

Query: 181  KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISIEGMKMTAEYKAQRKKNDDPEQLPEP 240
            KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKI+IEGMKMTAEYKAQRKKNDD EQLPEP
Sbjct: 181  KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITIEGMKMTAEYKAQRKKNDDQEQLPEP 240

Query: 241  VERKQTLTAERVLGILKRITDEDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 300
            VERKQTLTAERVLGILKRITD+DCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS
Sbjct: 241  VERKQTLTAERVLGILKRITDDDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 300

Query: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360
            SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT
Sbjct: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360

Query: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 420
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT
Sbjct: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 420

Query: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYK- 480
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYK 
Sbjct: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKA 480

Query: 481  ---VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 540
               VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN
Sbjct: 481  RFSVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 540

Query: 541  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMN 600
            MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMN
Sbjct: 541  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMN 600

Query: 601  ILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHITPGDT 660
            ILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGH+TPGDT
Sbjct: 601  ILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHVTPGDT 660

Query: 661  FVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 720
            FVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS
Sbjct: 661  FVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 720

Query: 721  IGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLN 780
            IGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLN
Sbjct: 721  IGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLN 780

Query: 781  KARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRT 840
            KARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRT
Sbjct: 781  KARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRT 840

Query: 841  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 900
            LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK
Sbjct: 841  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 900

Query: 901  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFED 960
            AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFED
Sbjct: 901  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFED 960

Query: 961  ENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKR 1020
            ENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKR
Sbjct: 961  ENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKR 1020

Query: 1021 LIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1080
            LIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILL
Sbjct: 1021 LIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1080

Query: 1081 RSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLN 1140
            RSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLN
Sbjct: 1081 RSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLN 1140

Query: 1141 TFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTT 1200
            TFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTT
Sbjct: 1141 TFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTT 1200

Query: 1201 LRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVD 1260
            LRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVD
Sbjct: 1201 LRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVD 1260

Query: 1261 KKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLK 1320
            KKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLK
Sbjct: 1261 KKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLK 1320

Query: 1321 KIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHED 1380
            KIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVM HED
Sbjct: 1321 KIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMCHED 1380

Query: 1381 VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL 1440
            VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL
Sbjct: 1381 VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL 1440

Query: 1441 MAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGC 1500
            MAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGC
Sbjct: 1441 MAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGC 1500

Query: 1501 ALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPI 1560
            ALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPI
Sbjct: 1501 ALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPI 1560

Query: 1561 SDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT 1620
            SDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT
Sbjct: 1561 SDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT 1620

Query: 1621 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1680
            SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
Sbjct: 1621 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1680

Query: 1681 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1740
            SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
Sbjct: 1681 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1740

Query: 1741 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSP 1800
            PSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSP
Sbjct: 1741 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSP 1800

Query: 1801 SSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYS 1854
            SSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYS
Sbjct: 1801 SSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYS 1860

[Close]

BLAST of Chy6G127870 vs. ExPASy TrEMBL
Match: A0A6J1CV04 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111014830 PE=3 SV=1)

HSP 1 Score: 3575.8 bits (9271), Expect = 0.0e+00
Identity = 1825/1853 (98.49%), Postives = 1845/1853 (99.57%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
            FKQALRIKNPKNRL+KILDACKNKTKCEGGDEIDVQGQ+S+QPVKK RGGCGAQQPKISI
Sbjct: 121  FKQALRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQESEQPVKKGRGGCGAQQPKISI 180

Query: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
            +GMKM AEYKAQRKKNDD EQLPEPVERKQTL+AERVLG+LKRI+DEDCKLLGLNPKYAR
Sbjct: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
            LTRTSAWH+ESETG ITPGDTFVRIEKGEL+SGTLCKKALGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHAESETGFITPGDTFVRIEKGELISGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIS AKNEVKNLIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISLAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMM+SFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
            LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADR+Q
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRFQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GEDPLSVEAQKNATL FNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLLFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
            PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            +P+KISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 SPDKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
            NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDE EGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDEYEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAV+ HEDVDA+RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSP+YLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740

Query: 1741 PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800
            PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN
Sbjct: 1741 PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800

Query: 1801 TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRSRKDDRNN 1854
            TGPSP++SPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTS+KDDRSRKDDR+N
Sbjct: 1801 TGPSPEFSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSEKDDRSRKDDRSN 1853

[Close]

BLAST of Chy6G127870 vs. ExPASy TrEMBL
Match: A0A6J1ELE9 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111435248 PE=3 SV=1)

HSP 1 Score: 3569.2 bits (9254), Expect = 0.0e+00
Identity = 1823/1853 (98.38%), Postives = 1842/1853 (99.41%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKV GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
            FKQA+RIKNPKNRL+KILDACKNKTKCEGGDEIDVQGQDSDQPVK+ RGGCGAQQPKISI
Sbjct: 121  FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI 180

Query: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
            +GMKM AEYKAQRKKNDD EQLPEPVERKQTL+AERVLG+LKRI+D+DCKLLGLNPKYAR
Sbjct: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDDDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PD MILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMNILMWWEDFDGK+PAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
            L+RTSAWHSESE+G ITPGDTFVRIEKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900

Query: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
            LDSLKMKKKEFERIFRYEFEDENWKP+YMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
            PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED+DFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
            NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAV+ HEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGL+FGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSP+YLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740

Query: 1741 PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800
            PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN
Sbjct: 1741 PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800

Query: 1801 TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRSRKDDRNN 1854
            TG SPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYT QT+DKDDRSRKDDR+N
Sbjct: 1801 TGASPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSN 1853

[Close]

BLAST of Chy6G127870 vs. NCBI nr
Match: XP_004146161.3 (DNA-directed RNA polymerase II subunit 1 [Cucumis sativus] >XP_011650276.2 DNA-directed RNA polymerase II subunit 1 [Cucumis sativus] >KAE8649994.1 hypothetical protein Csa_011172 [Cucumis sativus])

HSP 1 Score: 3613 bits (9368), Expect = 0.0
Identity = 1851/1853 (99.89%), Postives = 1851/1853 (99.89%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
            FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180

Query: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
            EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR
Sbjct: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMN LMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
            LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
            LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
            PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
            NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740

Query: 1741 PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800
            PQSAKYSPSQAY PSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN
Sbjct: 1741 PQSAKYSPSQAYLPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800

Query: 1801 TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRSRKDDRNN 1853
            TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRSRKDDRNN
Sbjct: 1801 TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRSRKDDRNN 1853

[Close]

BLAST of Chy6G127870 vs. NCBI nr
Match: TYK11392.1 (DNA-directed RNA polymerase II subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 3591 bits (9312), Expect = 0.0
Identity = 1848/1888 (97.88%), Postives = 1851/1888 (98.04%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEI-------------------------------- 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEI                                
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIVILLPTPPQFSFILSDSVLILRGCSWVKNALH 60

Query: 61   ---RQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL 120
               RQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL
Sbjct: 61   LYERQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL 120

Query: 121  AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT 180
            AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT
Sbjct: 121  AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT 180

Query: 181  KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISIEGMKMTAEYKAQRKKNDDPEQLPEP 240
            KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKI+IEGMKMTAEYKAQRKKNDD EQLPEP
Sbjct: 181  KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITIEGMKMTAEYKAQRKKNDDQEQLPEP 240

Query: 241  VERKQTLTAERVLGILKRITDEDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 300
            VERKQTLTAERVLGILKRITD+DCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS
Sbjct: 241  VERKQTLTAERVLGILKRITDDDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 300

Query: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360
            SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT
Sbjct: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360

Query: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 420
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT
Sbjct: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 420

Query: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 480
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV
Sbjct: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 480

Query: 481  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 540
            ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 481  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 540

Query: 541  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMW 600
            QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMW
Sbjct: 541  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMW 600

Query: 601  WEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHITPGDTFVRI 660
            WEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGH+TPGDTFVRI
Sbjct: 601  WEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHVTPGDTFVRI 660

Query: 661  EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 720
            EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG
Sbjct: 661  EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 720

Query: 721  DTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD 780
            DTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD
Sbjct: 721  DTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD 780

Query: 781  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 840
            DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF
Sbjct: 781  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 840

Query: 841  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 900
            TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 841  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 900

Query: 901  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWK 960
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWK
Sbjct: 901  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWK 960

Query: 961  PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQN 1020
            PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQN
Sbjct: 961  PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQN 1020

Query: 1021 AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF 1080
            AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF
Sbjct: 1021 AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF 1080

Query: 1081 ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1140
            ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1081 ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1140

Query: 1141 AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSV 1200
            AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSV
Sbjct: 1141 AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSV 1200

Query: 1201 TQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS 1260
            TQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS
Sbjct: 1201 TQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS 1260

Query: 1261 MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIES 1320
            MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIES
Sbjct: 1261 MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIES 1320

Query: 1321 NMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDAR 1380
            NMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVM HEDVDAR
Sbjct: 1321 NMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMCHEDVDAR 1380

Query: 1381 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1440
            RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1381 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1440

Query: 1441 RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL 1500
            RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL
Sbjct: 1441 RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL 1500

Query: 1501 NDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQ 1560
            NDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQ
Sbjct: 1501 NDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQ 1560

Query: 1561 FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1620
            FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY
Sbjct: 1561 FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1620

Query: 1621 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1680
            SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1680

Query: 1681 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1740
            PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
Sbjct: 1681 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1740

Query: 1741 PTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPY 1800
            PTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPY
Sbjct: 1741 PTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPY 1800

Query: 1801 SPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYSPTAP 1853
            SPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYSPTAP
Sbjct: 1801 SPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYSPTAP 1860

[Close]

BLAST of Chy6G127870 vs. NCBI nr
Match: KAA0052935.1 (DNA-directed RNA polymerase II subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 3585 bits (9297), Expect = 0.0
Identity = 1848/1892 (97.67%), Postives = 1851/1892 (97.83%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEI-------------------------------- 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEI                                
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIVILLPTPPQFSFILSDSVLILRGCSWVKNALH 60

Query: 61   ---RQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL 120
               RQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL
Sbjct: 61   LYERQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL 120

Query: 121  AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT 180
            AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT
Sbjct: 121  AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT 180

Query: 181  KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISIEGMKMTAEYKAQRKKNDDPEQLPEP 240
            KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKI+IEGMKMTAEYKAQRKKNDD EQLPEP
Sbjct: 181  KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITIEGMKMTAEYKAQRKKNDDQEQLPEP 240

Query: 241  VERKQTLTAERVLGILKRITDEDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 300
            VERKQTLTAERVLGILKRITD+DCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS
Sbjct: 241  VERKQTLTAERVLGILKRITDDDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 300

Query: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360
            SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT
Sbjct: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360

Query: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 420
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT
Sbjct: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 420

Query: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYK- 480
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYK 
Sbjct: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKA 480

Query: 481  ---VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 540
               VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN
Sbjct: 481  RFSVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 540

Query: 541  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMN 600
            MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMN
Sbjct: 541  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMN 600

Query: 601  ILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHITPGDT 660
            ILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGH+TPGDT
Sbjct: 601  ILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHVTPGDT 660

Query: 661  FVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 720
            FVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS
Sbjct: 661  FVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 720

Query: 721  IGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLN 780
            IGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLN
Sbjct: 721  IGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLN 780

Query: 781  KARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRT 840
            KARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRT
Sbjct: 781  KARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRT 840

Query: 841  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 900
            LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK
Sbjct: 841  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 900

Query: 901  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFED 960
            AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFED
Sbjct: 901  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFED 960

Query: 961  ENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKR 1020
            ENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKR
Sbjct: 961  ENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKR 1020

Query: 1021 LIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1080
            LIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILL
Sbjct: 1021 LIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1080

Query: 1081 RSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLN 1140
            RSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLN
Sbjct: 1081 RSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLN 1140

Query: 1141 TFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTT 1200
            TFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTT
Sbjct: 1141 TFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTT 1200

Query: 1201 LRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVD 1260
            LRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVD
Sbjct: 1201 LRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVD 1260

Query: 1261 KKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLK 1320
            KKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLK
Sbjct: 1261 KKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLK 1320

Query: 1321 KIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHED 1380
            KIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVM HED
Sbjct: 1321 KIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMCHED 1380

Query: 1381 VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL 1440
            VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL
Sbjct: 1381 VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL 1440

Query: 1441 MAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGC 1500
            MAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGC
Sbjct: 1441 MAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGC 1500

Query: 1501 ALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPI 1560
            ALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPI
Sbjct: 1501 ALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPI 1560

Query: 1561 SDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT 1620
            SDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT
Sbjct: 1561 SDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT 1620

Query: 1621 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1680
            SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
Sbjct: 1621 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1680

Query: 1681 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1740
            SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
Sbjct: 1681 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1740

Query: 1741 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSP 1800
            PSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSP
Sbjct: 1741 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSP 1800

Query: 1801 SSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYS 1853
            SSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYS
Sbjct: 1801 SSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYS 1860

[Close]

BLAST of Chy6G127870 vs. NCBI nr
Match: XP_038904743.1 (DNA-directed RNA polymerase II subunit RPB1 [Benincasa hispida])

HSP 1 Score: 3578 bits (9279), Expect = 0.0
Identity = 1836/1853 (99.08%), Postives = 1839/1853 (99.24%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILV E+DPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVSEDDPK 120

Query: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
            FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQ+SDQP KK RGGCGAQQPKI+I
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQESDQPAKKGRGGCGAQQPKITI 180

Query: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
            EGMKMTAEYK QRKKNDD EQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR
Sbjct: 181  EGMKMTAEYKPQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
            LTRTSAWHSESETG ITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHSESETGFITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
            LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
            PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
            NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVM HEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740
            PSYSPTSPSYSPTSPSYSPTSP       AYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSP-------AYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740

Query: 1741 PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800
            PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN
Sbjct: 1741 PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800

Query: 1801 TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRSRKDDRNN 1853
            TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRSRKDDRNN
Sbjct: 1801 TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRSRKDDRNN 1846

[Close]

BLAST of Chy6G127870 vs. NCBI nr
Match: XP_022145356.1 (DNA-directed RNA polymerase II subunit 1 [Momordica charantia] >XP_022145357.1 DNA-directed RNA polymerase II subunit 1 [Momordica charantia] >XP_022145358.1 DNA-directed RNA polymerase II subunit 1 [Momordica charantia] >XP_022145359.1 DNA-directed RNA polymerase II subunit 1 [Momordica charantia] >XP_022145360.1 DNA-directed RNA polymerase II subunit 1 [Momordica charantia])

HSP 1 Score: 3570 bits (9257), Expect = 0.0
Identity = 1825/1853 (98.49%), Postives = 1845/1853 (99.57%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
            FKQALRIKNPKNRL+KILDACKNKTKCEGGDEIDVQGQ+S+QPVKK RGGCGAQQPKISI
Sbjct: 121  FKQALRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQESEQPVKKGRGGCGAQQPKISI 180

Query: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
            +GMKM AEYKAQRKKNDD EQLPEPVERKQTL+AERVLG+LKRI+DEDCKLLGLNPKYAR
Sbjct: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
            LTRTSAWH+ESETG ITPGDTFVRIEKGEL+SGTLCKKALGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHAESETGFITPGDTFVRIEKGELISGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIS AKNEVKNLIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISLAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMM+SFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
            LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADR+Q
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRFQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GEDPLSVEAQKNATL FNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLLFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
            PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            +P+KISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 SPDKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
            NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDE EGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDEYEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAV+ HEDVDA+RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSP+YLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740

Query: 1741 PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800
            PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN
Sbjct: 1741 PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800

Query: 1801 TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRSRKDDRNN 1853
            TGPSP++SPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTS+KDDRSRKDDR+N
Sbjct: 1801 TGPSPEFSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSEKDDRSRKDDRSN 1853

[Close]

BLAST of Chy6G127870 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 3208.3 bits (8317), Expect = 0.0e+00
Identity = 1627/1851 (87.90%), Postives = 1736/1851 (93.79%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MD RFP+SPAEV+KVR+VQFGILSPDEIRQMSV+ +EH ETTE+GKPKV GLSD RLGTI
Sbjct: 1    MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRK+KCETC ANMAECPGHFG+LELAKPM+H+GFMKTVL+IMR VCFNCSKIL DEE+ K
Sbjct: 61   DRKVKCETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK 120

Query: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEI-DVQGQDSDQPVKKSRGGCGAQQPKIS 180
            FKQA++IKNPKNRL+KILDACKNKTKC+GGD+I DVQ   +D+PVKKSRGGCGAQQPK++
Sbjct: 121  FKQAMKIKNPKNRLKKILDACKNKTKCDGGDDIDDVQSHSTDEPVKKSRGGCGAQQPKLT 180

Query: 181  IEGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYA 240
            IEGMKM AEYK QRKKND+P+QLPEP ERKQTL A+RVL +LKRI+D DC+LLG NPK+A
Sbjct: 181  IEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFA 240

Query: 241  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHII 300
            RPDWMIL+VLPIPPPPVRPSVMMD +SRSEDDLTHQLAMIIRHNENL+RQE+NG+PAHII
Sbjct: 241  RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII 300

Query: 301  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360
            SEF QLLQFHIATYFDNELPG PRATQ+SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 301  SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360

Query: 361  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 420
            RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELV+YGPHPPPGKTGAKYII
Sbjct: 361  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII 420

Query: 421  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 480
            RDDGQRLDLRYLKKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRI+IMPYS
Sbjct: 421  RDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYS 480

Query: 481  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 540
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 481  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 540

Query: 541  TLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQI 600
            TLLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAPAILKP+PLWTGKQVFNLIIPKQI
Sbjct: 541  TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 600

Query: 601  NLTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDA 660
            NL R SAWH+++ETG ITPGDT VRIE+GELL+GTLCKK LGTS GSL+HVIWEEVGPDA
Sbjct: 601  NLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDA 660

Query: 661  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERS 720
            ARKFLGHTQWLVNYWLLQN F+IGIGDTIAD++TMEKINETIS AK  VK+LI++ Q + 
Sbjct: 661  ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKE 720

Query: 721  LEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 780
            L+PEPGRTM D+FEN+VNQVLNKARDDAGSSAQKSL+E+NNLKAMVTAGSKGSFINISQM
Sbjct: 721  LDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM 780

Query: 781  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840
            TACVGQQNVEGKRIPFGF  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 781  TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840

Query: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900

Query: 901  KLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRY 960
            KLDSLKMKK EF+R F+YE +DENW P Y+  EH+EDLK IRE R+VF+AE  KLE DR+
Sbjct: 901  KLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRF 960

Query: 961  QLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVV 1020
            QLGTEIAT G+++WP+PVN+KR I NAQKTFKID R+ SDMHP+EIV+A+DKLQERL VV
Sbjct: 961  QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV 1020

Query: 1021 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAP 1080
            PG+D LSVEAQKNATLFFNILLRST ASKRVL+EY+L+REAFEWVIGEIESRFLQSLVAP
Sbjct: 1021 PGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAP 1080

Query: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140

Query: 1141 KPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEE 1200
             PEA+K+KE AKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED +FV+SYYEMPDE+
Sbjct: 1141 TPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDED 1200

Query: 1201 IAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1260
            ++P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNA+KLILRIRI
Sbjct: 1201 VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRI 1260

Query: 1261 MNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFK 1320
            MNDE PKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK  + ++FDE  GFK
Sbjct: 1261 MNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGFK 1320

Query: 1321 PEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1380
               EWMLDTEGVNLLAVM HEDVD +RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1321 TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1380

Query: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1440
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAA YAETD
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD 1440

Query: 1441 HLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGT 1500
             LRGVTENIMLGQLAPIGTG C LYLNDEMLKNAIELQLPSY+DGL+FGMTP+RSP+SGT
Sbjct: 1441 CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSGT 1500

Query: 1501 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 1560
            PYHEGMMSPNYLLSPN+RLSP+SDAQFSPYVGGMAFSP+       SSPGYSPSSPGYSP
Sbjct: 1501 PYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPS-------SSPGYSPSSPGYSP 1560

Query: 1561 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1620
            TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS
Sbjct: 1561 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1620

Query: 1621 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1680
            YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA       YSPTSPSYSPT
Sbjct: 1621 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA-------YSPTSPSYSPT 1680

Query: 1681 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSY 1740
            SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSY PTSPSY
Sbjct: 1681 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSY 1740

Query: 1741 NPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPY 1800
            NPQSAKYSPS AYSPS+ RLSP+SPYSPTSPNYSPTSPSYSPTSP+YSPSSPTYSPSSPY
Sbjct: 1741 NPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPY 1800

Query: 1801 NTGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRSRKDD 1851
            ++G SPD       YSPSAGYSPT PGYSPSST QYTP   DK D++ K D
Sbjct: 1801 SSGASPD-------YSPSAGYSPTLPGYSPSSTGQYTPHEGDKKDKTGKKD 1830

[Close]

BLAST of Chy6G127870 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 708.8 bits (1828), Expect = 1.2e-203
Identity = 494/1473 (33.54%), Postives = 743/1473 (50.44%), Query Frame = 0


Query: 14   KVRMVQFGILSPDEIRQMSVVQIEH-GETTERGKPKVAGLSDPRLGTIDRKMKCETCTAN 73
            K++ + F +LS  E+ + + VQ+ + G      KP   GL DPR+G  ++K  C TC  N
Sbjct: 22   KIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGPPNKKSICTTCEGN 81

Query: 74   MAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALR-IKNPK 133
               CPGH+G+L+L  P++++G+   +L I++ +C  CS +L+DE+   ++  LR ++NP+
Sbjct: 82   FQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDEK--LYEDHLRKMRNPR 141

Query: 134  NRLRKILDACK---NKTKCEGGDEIDVQGQDS--DQPVKK--SRGGCGAQQPKISIEGMK 193
                K  +  K    K        I    +    +  VKK  ++ G G    +  I G +
Sbjct: 142  MEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFGIGISHDRSKIHGGE 201

Query: 194  MTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYARPDWM 253
            +  E K+             P+     L    VLG+ KR++D+DC+LL +     RP+ +
Sbjct: 202  ID-ECKSAISHTKQSTAAINPL--TYVLDPNLVLGLFKRMSDKDCELLYI---AYRPENL 261

Query: 254  ILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRR--QERNGSPAHIISEF 313
            I+  + +PP  +RPSVM+     +E+DLT +L  II  N +L +   +   SP ++  + 
Sbjct: 262  IITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNM--QV 321

Query: 314  AQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 373
               +Q  +A Y ++E+ G     Q    P+  I  RLK K GR R NL GKRV+F+ RTV
Sbjct: 322  WDTVQIEVARYINSEVRGC--QNQPEEHPLSGILQRLKGKGGRFRANLSGKRVEFTGRTV 381

Query: 374  ITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 433
            I+PDP + I E+G+P  +A  LT+PE V+ +NIE+L++ V  GP+  PG    +Y    D
Sbjct: 382  ISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRY---PD 441

Query: 434  GQRLDL--RYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 493
            G    L   Y K+ +D  L +G  V+RHL +GD VLFNRQPSLH+MSIM HR +IMP+ T
Sbjct: 442  GSSRTLVGDYRKRIAD-ELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRT 501

Query: 494  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 553
             R N SV +PYNADFDGDEMNMHVPQ+ E R E + LM V   + +P++   ++   QD 
Sbjct: 502  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDF 561

Query: 554  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKI--PAPAILKPQPLWTGKQVFNLIIPKQ 613
            L     IT++DTF  +  F  I  +  D    I  P P ILKP  LWTGKQ+F++++   
Sbjct: 562  LTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQIFSVLLRPN 621

Query: 614  INL-----------TRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGT-STGS 673
             ++                 H   ET  I  G  +V     EL+SG L K  LG  +   
Sbjct: 622  ASIRVYVTLNVKEKNFKKGEHGFDETMCINDG--WVYFRNSELISGQLGKATLGNGNKDG 681

Query: 674  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKN 733
            L  ++  +    AA   +     L   W+  + FSIGI D        ++  ++I    +
Sbjct: 682  LYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQFGYD 741

Query: 734  EVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVT 793
            +    I++    +L+ + G     S E ++  +LN  R+  G +    L   N+   M  
Sbjct: 742  QCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPLIMSQ 801

Query: 794  AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 853
             GSKGS INISQM ACVGQQ V G R P GFIDR+LPHF +    P ++GFV NS+  GL
Sbjct: 802  CGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGL 861

Query: 854  TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 913
            T  EFFFH MGGREGL+DTAVKT+ TGY+ RRL+KA+ED++V YD TVRN+ G ++QF Y
Sbjct: 862  TATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTY 921

Query: 914  GEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNV 973
            G+DGMD   +E +    L      F R+F    + +   P    P       +  E    
Sbjct: 922  GDDGMDPALMEGKDGAPL-----NFNRLF---LKVQATCP----PRSHHTYLSSEELSQK 981

Query: 974  FEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIV 1033
            FE E+  +  D+ ++ T+                                         V
Sbjct: 982  FEEEL--VRHDKSRVCTD---------------------------------------AFV 1041

Query: 1034 EAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIG 1093
            +++ +    L V     P              +L +++  + + L+ +          + 
Sbjct: 1042 KSLREFVSLLGVKSASPP-------------QVLYKASGVTDKQLEVF----------VK 1101

Query: 1094 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 1153
                R+ +  +  G  IG + AQSIGEP TQMTL TFH+AGV++ N+T GVPR+ EIIN 
Sbjct: 1102 ICVFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEIINA 1161

Query: 1154 AKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDI 1213
            +K I TP +S  L+     T   A+ V+  +E TTL  V ++ EV       S  I  D 
Sbjct: 1162 SKNISTPVISAELENPLELTS--ARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIILDN 1221

Query: 1214 DFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFN 1273
              +         E A   I+PW ++  + +   +           K+N   D+D      
Sbjct: 1222 KII---------EEACLSITPWSVKNSILKTPRI-----------KLN---DND------ 1281

Query: 1274 DDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKC 1333
                      IR+++       + D+S     F      N+L  + + GI  + +V +  
Sbjct: 1282 ----------IRVLDTGLDITPVVDKSRAH--FNLHNLKNVLPNIIVNGIKTVERVVV-- 1341

Query: 1334 GKVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRR 1393
                  D+++    + +W L  EG NLLAVM    ++ R TTSN+++EV + LGIEA R 
Sbjct: 1342 --AEDMDKSKQIDGKTKWKLFVEGTNLLAVMGTPGINGRTTTSNNVVEVSKTLGIEAART 1353

Query: 1394 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1453
            +++DE+  V+   G  ++ RH+ +L D MTYRG ++ I R GI + D   +M+ SFE T 
Sbjct: 1402 TIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTG 1353

Query: 1454 DILLDAAVYAETDHLRGVTENIMLGQLAPIGTG 1460
            D L  AA   + D++ GVTE +++G    +GTG
Sbjct: 1462 DHLFSAAASGKVDNIEGVTECVIMGIPMKLGTG 1353

[Close]

BLAST of Chy6G127870 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 679.5 bits (1752), Expect = 7.7e-195
Identity = 495/1500 (33.00%), Postives = 739/1500 (49.27%), Query Frame = 0


Query: 14   KVRMVQFGILSPDEIRQMSVVQIEH-GETTERGKPKVAGLSDPRLGTIDRKMKCETCTAN 73
            K++ + F +LS  E+ + + VQ+ + G      KP   GL DPR+G  ++K  C TC  N
Sbjct: 22   KIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGPPNKKSICTTCEGN 81

Query: 74   MAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVC----------FNCSKILVDEEDPKFK 133
               CPGH+G+L+L  P++++G+   +L I++ +C            CS +L+DE+   ++
Sbjct: 82   FQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKVTELADYVSLRCSNMLLDEK--LYE 141

Query: 134  QALR-IKNPKNRLRKILDACK---NKTKCEGGDEIDVQGQDS--DQPVKK--SRGGCGAQ 193
              LR ++NP+    K  +  K    K        I    +    +  VKK  ++ G G  
Sbjct: 142  DHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFGIGIS 201

Query: 194  QPKISIEGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGL 253
              +  I G ++  E K+             P+     L    VLG+ KR++D+DC+LL +
Sbjct: 202  HDRSKIHGGEID-ECKSAISHTKQSTAAINPL--TYVLDPNLVLGLFKRMSDKDCELLYI 261

Query: 254  NPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRR--QERN 313
                 RP+ +I+  + +PP  +RPSVM+     +E+DLT +L  II  N +L +   +  
Sbjct: 262  ---AYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPT 321

Query: 314  GSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 373
             SP ++  +    +Q  +A Y ++E+ G     Q    P+  I  RLK K GR R NL G
Sbjct: 322  SSPKNM--QVWDTVQIEVARYINSEVRGC--QNQPEEHPLSGILQRLKGKGGRFRANLSG 381

Query: 374  KRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 433
            KRV+F+ RTVI+PDP + I E+G+P  +A  LT+PE V+ +NIE+L++ V  GP+  PG 
Sbjct: 382  KRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGA 441

Query: 434  TGAKYIIRDDGQRLDL--RYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 493
               +Y    DG    L   Y K+ +D  L +G  V+RHL +GD VLFNRQPSLH+MSIM 
Sbjct: 442  RNVRY---PDGSSRTLVGDYRKRIAD-ELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMC 501

Query: 494  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 553
            HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R E + LM V   + +P++ 
Sbjct: 502  HRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNG 561

Query: 554  RPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKI--PAPAILKPQPLWTGK 613
              ++   QD L     IT++DTF  +  F  I  +  D    I  P P ILKP  LWTGK
Sbjct: 562  EILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGK 621

Query: 614  QVFNLIIPKQINL-----------TRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCK 673
            Q+F++++    ++                 H   ET  I  G  +V     EL+SG L K
Sbjct: 622  QIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDG--WVYFRNSELISGQLGK 681

Query: 674  KALGT--------STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIA 733
              L          +   L  ++  +    AA   +     L   W+  + FSIGI D   
Sbjct: 682  ATLALDIFPLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQP 741

Query: 734  DAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGS 793
                 ++  ++I    ++    I++    +L+ + G     S E ++  +LN  R+  G 
Sbjct: 742  GEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGK 801

Query: 794  SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDD 853
            +    L   N+   M   GSKGS INISQM ACVGQQ V G R P GFIDR+LPHF +  
Sbjct: 802  ACMSGLHWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMS 861

Query: 854  YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 913
              P ++GFV NS+  GLT  EFFFH MGGREGL+DTAVKT+ TGY+ RRL+KA+ED++V 
Sbjct: 862  KSPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVH 921

Query: 914  YDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYM 973
            YD TVRN+ G ++QF YG+DGMD   +E +    L      F R+F    + +   P   
Sbjct: 922  YDNTVRNASGCILQFTYGDDGMDPALMEGKDGAPL-----NFNRLF---LKVQATCP--- 981

Query: 974  LPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKT 1033
             P       +  E    FE E+  +  D+ ++ T+                         
Sbjct: 982  -PRSHHTYLSSEELSQKFEEEL--VRHDKSRVCTD------------------------- 1041

Query: 1034 FKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKR 1093
                            V+++ +    L V     P              +L +++  + +
Sbjct: 1042 --------------AFVKSLREFVSLLGVKSASPP-------------QVLYKASGVTDK 1101

Query: 1094 VLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS 1153
             L+ +          +     R+ +  +  G  IG + AQSIGEP TQMTL TFH+AGV+
Sbjct: 1102 QLEVF----------VKICVFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVA 1161

Query: 1154 AKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQAT 1213
            + N+T GVPR+ EIIN +K I TP +S  L+     T   A+ V+  +E TTL  V ++ 
Sbjct: 1162 SMNITQGVPRINEIINASKNISTPVISAELENPLELTS--ARWVKGRIEKTTLGQVAESI 1221

Query: 1214 EVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLL--------RIELNRE--MM 1273
            EV       S  I  D   +         E A   I+PW +        RI+LN     +
Sbjct: 1222 EVLMTSTSASVRIILDNKII---------EEACLSITPWSVKNSILKTPRIKLNDNDIRV 1281

Query: 1274 VDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVF 1333
            +D  L +  + +K            FN  N + ++  I I+N                  
Sbjct: 1282 LDTGLDITPVVDKSRAH--------FNLHNLKNVLPNI-IVNG----------------- 1341

Query: 1334 LKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMTH 1393
            +K +E  ++ E       D++K+  K              P   W       NLLAVM  
Sbjct: 1342 IKTVERVVVAE-------DMDKMLAKL-----------IIPCPRWAC----TNLLAVMGT 1368

Query: 1394 EDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRG 1453
              ++ R TTSN+++EV + LGIEA R +++DE+  V+   G  ++ RH+ +L D MTYRG
Sbjct: 1402 PGINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRG 1368

Query: 1454 HLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTG 1460
             ++ I R GI + D   +M+ SFE T D L  AA   + D++ GVTE +++G    +GTG
Sbjct: 1462 EVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTG 1368

[Close]

BLAST of Chy6G127870 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 454.9 bits (1169), Expect = 3.1e-127
Identity = 458/1761 (26.01%), Postives = 711/1761 (40.37%), Query Frame = 0


Query: 3    LRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKVAGLSDPRLGTID 62
            L FP   ++V  V  V+F  ++  ++R+ S +++      +  G P   GL D +LG  D
Sbjct: 17   LLFPMGASQV--VESVRFSFMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKD 76

Query: 63   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK- 122
             K  C +C      CPGH GH+EL  P++H      +   ++  CF C   +   ED + 
Sbjct: 77   DKQACNSCGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVER 136

Query: 123  --FKQALRIKNPKNRLRKILDACKNKTK-----CEGGDEIDVQGQDSDQPVK-------- 182
               +  L IK      +++      K+K     CE     D   +  D  V+        
Sbjct: 137  AVSQLKLIIKGDIVSAKQLESNTPTKSKSSDESCESVVTTDSSEECEDSDVEDQRWTSLQ 196

Query: 183  ----------------KSRGGCGAQQPKIS---------------------IEGMKMTAE 242
                            KS   C    PK+                      I G+K+   
Sbjct: 197  FAEVTAVLKNFMRLSSKSCSRCKGINPKLEKPMFGWVRMRAMKDSDVGANVIRGLKLKKS 256

Query: 243  Y------------------------KAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRI 302
                                     K  R+K+ +     E    K+ L    V  ILK +
Sbjct: 257  TSSVENPDGFDDSGIDALSEVEDGDKETREKSTEVAAEFEEHNSKRDLLPSEVRNILKHL 316

Query: 303  ---TDEDCKLLG----LNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLA 362
                 E C  +G       +        L+ + +PP   RP       S  E   T  L 
Sbjct: 317  WQNEHEFCSFIGDLWQSGSEKIDYSMFFLESVLVPPTKFRPPT-TGGDSVMEHPQTVGLN 376

Query: 363  MIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICS 422
             +I  N  L     N      +    + LQ  +   FD++      AT +S R    IC 
Sbjct: 377  KVIESNNILGNACTNKLDQSKVIFRWRNLQESVNVLFDSK-----TATVQSQRDSSGICQ 436

Query: 423  RLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIER 482
             L+ KEG  R  +MGKRV+ + R+VI+PDP I ++++G+P   AL LTYPE VTP+N+E+
Sbjct: 437  LLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEK 496

Query: 483  LKELVEYGPHPPPGKT-------GAKYIIRDDGQRLDLRYLKKSSDHHLEL--------- 542
            L+E +  GP   PG T         K    +  +R   R L  S     EL         
Sbjct: 497  LREAIINGPDIHPGATHYSDKSSTMKLPSTEKARRAIARKLLSSRGATTELGKTCDINFE 556

Query: 543  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADFDGDEM 602
            G  V RH+ DGD VL NRQP+LHK S+M H+++++    T RL+ +  S YNADFDGDEM
Sbjct: 557  GKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDEM 616

Query: 603  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFM 662
            N+H PQ   +RAE   ++        P +  P+  ++QD ++    +TKRDTF+ KD F 
Sbjct: 617  NVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHFN 676

Query: 663  NIL-------MWWEDFDGK---------------IPAPAILKPQPLWTGKQVFNLIIPK- 722
             +L       M    F G+                  PAILKP PLWTGKQV   ++ + 
Sbjct: 677  QLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQI 736

Query: 723  ---------------QINLTRTSAWHSESETGHITP------------GDTFVRIEKGEL 782
                            ++  +  +   +  +G +T              +  + I K E 
Sbjct: 737  TKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDLTKKKEIDESWKQNLNEDKLHIRKNEF 796

Query: 783  LSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIAD 842
            + G + K     +   L+H + E  G +AA   L     L   +L  + F+ G+ D I  
Sbjct: 797  VCGVIDKAQF--ADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGFTCGVDDLIIL 856

Query: 843  AATMEKINETISAAKNEVKNLIKKA----QERSLEPEPGRTMMD---------------- 902
                E+  + +   +N  + +++K      +  ++P+  R+ ++                
Sbjct: 857  KDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDPQDMRSRIERILYEDGESALASLDR 916

Query: 903  SFENKVNQVLNK-ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE 962
            S  N +NQ  +K   +D  S         N +  M  +G+KGS +N  Q+++ +GQQ++E
Sbjct: 917  SIVNYLNQCSSKGVMNDLLSDGLLKTPGRNCISLMTISGAKGSKVNFQQISSHLGQQDLE 976

Query: 963  GKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 1022
            GKR+P     +TLP F   D+ P + GF+ + +L GL PQE++FH M GREGL+DTAVKT
Sbjct: 977  GKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKT 1036

Query: 1023 SETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKK 1082
            S +GY+QR L+K +E + V YD TVR++ G +IQF YGEDG+D                 
Sbjct: 1037 SRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVDV---------------- 1096

Query: 1083 EFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTG 1142
                 F  +F++     + +L +  ED+                              +G
Sbjct: 1097 -HRSSFIEKFKELTINQDMVLQKCSEDM-----------------------------LSG 1156

Query: 1143 ENSW--PMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSV 1202
             +S+   +P++LK+    A+K                 VEA+  + ER+           
Sbjct: 1157 ASSYISDLPISLKK---GAEK----------------FVEAM-PMNERI----------- 1216

Query: 1203 EAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1262
                              ASK V  E  L           ++S+F  SL  PGE +G +A
Sbjct: 1217 ------------------ASKFVRQEELLKL---------VKSKFFASLAQPGEPVGVLA 1276

Query: 1263 AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII-NVAKRIKTPSLSVYLKPEANKT 1322
            AQS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+   A  IKTP ++  L     KT
Sbjct: 1277 AQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAANIKTPIMTCPLL--KGKT 1336

Query: 1323 KERAKTVQCALEYTTLRSVTQATEV---------------------WYDPD--PMST-II 1382
            KE A  +   L   T+  + ++ E+                      Y P+  P  T I 
Sbjct: 1337 KEDANDITDRLRKITVADIIKSMELSVVPYTVYENEVCSIHKLKINLYKPEHYPKHTDIT 1396

Query: 1383 EEDIDFVKSYYEMPDEEIAPEKISPWLLRI--------------ELNREMMVDKKLS--- 1442
            EED +       +   E A E     L RI              E + +  V  K +   
Sbjct: 1397 EEDWEETMRAVFLRKLEDAIETHMKMLHRIRGIHNDVTGPIAGNETDNDDSVSGKQNEDD 1456

Query: 1443 ------------MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDES 1460
                        + + A+K   +  D++    N ++       I  + D     E  D  
Sbjct: 1457 GDDDGEGTEVDDLGSDAQKQKKQETDEMDYEENSEDETNEPSSISGVEDPEMDSENEDTE 1516

[Close]

BLAST of Chy6G127870 vs. TAIR 10
Match: AT2G40030.1 (nuclear RNA polymerase D1B )

HSP 1 Score: 210.7 bits (535), Expect = 1.0e-53
Identity = 212/844 (25.12%), Postives = 368/844 (43.60%), Query Frame = 0


Query: 65  KCETCTANMAE-CPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQ 124
           KCE+C A   + C GHFG+++L  P++H   +  +  ++  +C  C KI           
Sbjct: 56  KCESCGATEPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKI----------- 115

Query: 125 ALRIKNPKNRLR-KILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISIEG 184
             + K     L  ++L  C     CE   +I ++ + SD          GA     S   
Sbjct: 116 -KKAKGTSGGLADRLLGVC-----CEEASQISIKDRASD----------GA-----SYLE 175

Query: 185 MKMTAEYKAQRKKNDDPEQLPEPVERKQT--LTAERVLGILKRITDEDCKLLGLNPKYAR 244
           +K+ +  + Q    +  E+         T  L A  V  IL+RI +E  K L       +
Sbjct: 176 LKLPSRSRLQPGCWNFLERYGYRYGSDYTRPLLAREVKEILRRIPEESRKKLTAKGHIPQ 235

Query: 245 PDWMILQVLPIPPPPVR-PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHII 304
             + IL+ LP+PP  +  P      S+ S D    +L  +++    ++      +     
Sbjct: 236 EGY-ILEYLPVPPNCLSVPEASDGFSTMSVDPSRIELKDVLKKVIAIKSSRSGETNFESH 295

Query: 305 SEFAQLLQFHIATYFDNELPGLPRATQ----RSGRPIKSICSRLKAKEGRIRGNLMGKRV 364
              A  +   + TY   ++ G  +A +    R G    S  S  KA   ++R   + K  
Sbjct: 296 KAEASEMFRVVDTYL--QVRGTAKAARNIDMRYGVSKISDSSSSKAWTEKMRTLFIRKGS 355

Query: 365 DFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 424
            FS+R+VIT D   +++E+G+P  IA  +T+ E V+ +N   L++LV+        +   
Sbjct: 356 GFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVHNRGYLQKLVDDKLCLSYTQGST 415

Query: 425 KYIIRDDGQRLDLRYLKKSSDHHLEL--GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 484
            Y +RD             S  H EL  G  V R + DGD V  NR P+ HK S+   R+
Sbjct: 416 TYSLRD------------GSKGHTELKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRV 475

Query: 485 KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 544
            +   +T ++N  + SP +ADFDGD +++  PQS   +AEV+EL  V K ++S  + + +
Sbjct: 476 YVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLI 535

Query: 545 MGIVQDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQ---PLWTGKQV 604
           + +  D+LL  R + +R  F+ K     + M+       +P PA+ K     P WT  Q+
Sbjct: 536 LQMGSDSLLSLRVMLER-VFLDKATAQQLAMYG---SLSLPPPALRKSSKSGPAWTVFQI 595

Query: 605 FNLIIPKQINLTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHV 664
             L  P++++                  GD F+ ++  +LL       A+G+    ++  
Sbjct: 596 LQLAFPERLS----------------CKGDRFL-VDGSDLLKFDFGVDAMGSIINEIVTS 655

Query: 665 IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKN 724
           I+ E GP     F    Q L+   L    FS+ + D     A M+ I+  I    + + +
Sbjct: 656 IFLEKGPKETLGFFDSLQPLLMESLFAEGFSLSLEDLSMSRADMDVIHNLIIREISPMVS 715

Query: 725 LIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSK 784
            ++ +    L+           EN +++V   A +         + +S +++ ++   S 
Sbjct: 716 RLRLSYRDELQ----------LENSIHKVKEVAAN--------FMLKSYSIRNLIDIKSN 775

Query: 785 GSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESR----GFVENSYLRGL 844
            +   + Q T  +G Q  + K+     +   +  F K  YG  S     G V+  +  GL
Sbjct: 776 SAITKLVQQTGFLGLQLSDKKKFYTKTLVEDMAIFCKRKYGRISSSGDFGIVKGCFFHGL 813

Query: 845 TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFL 890
            P E   H++  RE ++ ++   +E G + + L+  + DI++  DGTVRN+  + VIQF 
Sbjct: 836 DPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVIQFK 813

The following BLAST results are available for this feature:

BLAST of Chy6G127870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P18616	0.0e+00	87.90	DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana OX=3702 GN=N...	[more]
P35084	0.0e+00	64.62	DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium discoideum OX=44689...	[more]
P11414	0.0e+00	59.30	DNA-directed RNA polymerase II subunit RPB1 OS=Cricetulus griseus OX=10029 GN=PO...	[more]
P08775	0.0e+00	59.30	DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus OX=10090 GN=Polr2a P...	[more]
P24928	0.0e+00	59.25	DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens OX=9606 GN=POLR2A PE...	[more]

BLAST of Chy6G127870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L655	0.0e+00	99.14	DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G002510 P...	[more]
A0A5D3CJC8	0.0e+00	97.88	DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7UGR7	0.0e+00	97.67	DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A6J1CV04	0.0e+00	98.49	DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110148...	[more]
A0A6J1ELE9	0.0e+00	98.38	DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11143524...	[more]

BLAST of Chy6G127870 vs. NCBI nr


Match Name	Identity	Description
XP_004146161.3	99.89	DNA-directed RNA polymerase II subunit 1 [Cucumis sativus] >XP_011650276.2 DNA-d...	[more]
TYK11392.1	97.88	DNA-directed RNA polymerase II subunit 1 [Cucumis melo var. makuwa]	[more]
KAA0052935.1	97.67	DNA-directed RNA polymerase II subunit 1 [Cucumis melo var. makuwa]	[more]
XP_038904743.1	99.08	DNA-directed RNA polymerase II subunit RPB1 [Benincasa hispida]	[more]
XP_022145356.1	98.49	DNA-directed RNA polymerase II subunit 1 [Momordica charantia] >XP_022145357.1 D...	[more]

BLAST of Chy6G127870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35800.1	0.0e+00	87.90	RNA polymerase II large subunit	[more]
AT5G60040.1	1.2e-203	33.54	nuclear RNA polymerase C1	[more]
AT5G60040.2	7.7e-195	33.00	nuclear RNA polymerase C1	[more]
AT3G57660.1	3.1e-127	26.01	nuclear RNA polymerase A1	[more]
AT2G40030.1	1.0e-53	25.12	nuclear RNA polymerase D1B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 694..721
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 1540..1556 score: 29.41 coord: 1597..1613 score: 35.29 coord: 1614..1631 score: 30.0 coord: 1569..1590 score: 35.45 coord: 1632..1657 score: 33.08
None	No IPR available	GENE3D	1.10.150.390		coord: 1417..1460 e-value: 2.6E-21 score: 77.2
None	No IPR available	GENE3D	2.40.40.20		coord: 343..527 e-value: 6.4E-50 score: 170.5
None	No IPR available	GENE3D	6.20.50.80		coord: 864..914 e-value: 4.5E-15 score: 56.8
None	No IPR available	GENE3D	3.30.1490.180	RNA polymerase ii	coord: 384..447 e-value: 5.0E-27 score: 96.2
None	No IPR available	GENE3D	6.10.250.2940		coord: 805..863 e-value: 7.4E-34 score: 117.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1772..1839
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1538..1759
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1538..1853
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 1..1559
None	No IPR available	PANTHER	PTHR19376:SF56	DNA-DIRECTED RNA POLYMERASE SUBUNIT	coord: 1..1559
None	No IPR available	CDD	cd02584	RNAP_II_Rpb1_C	coord: 1054..1466 e-value: 0.0 score: 780.62
None	No IPR available	CDD	cd02733	RNAP_II_RPB1_N	coord: 18..871 e-value: 0.0 score: 1525.54
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 6..1469
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 242..548 e-value: 2.3E-199 score: 678.3
IPR007080	RNA polymerase Rpb1, domain 1	PFAM	PF04997	RNA_pol_Rpb1_1	coord: 14..350 e-value: 1.6E-111 score: 372.6
IPR007066	RNA polymerase Rpb1, domain 3	PFAM	PF04983	RNA_pol_Rpb1_3	coord: 524..687 e-value: 2.5E-49 score: 167.2
IPR038593	RNA polymerase Rpb1, domain 7 superfamily	GENE3D	3.30.1360.140		coord: 1160..1295 e-value: 2.3E-54 score: 185.0
IPR044893	RNA polymerase Rpb1, clamp domain superfamily	GENE3D	4.10.860.120	RNA polymerase II, clamp domain	coord: 267..315 e-value: 7.6E-6 score: 27.6 coord: 4..127 e-value: 7.1E-35 score: 121.5
IPR007083	RNA polymerase Rpb1, domain 4	PFAM	PF05000	RNA_pol_Rpb1_4	coord: 714..818 e-value: 9.0E-39 score: 131.8
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 352..520 e-value: 2.2E-71 score: 239.4
IPR038120	RNA polymerase Rpb1, funnel domain superfamily	GENE3D	1.10.132.30		coord: 686..804 e-value: 3.4E-47 score: 161.4
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	1.10.274.100	RNA polymerase Rpb1, domain 3	coord: 528..681 e-value: 2.8E-58 score: 197.9
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PFAM	PF05001	RNA_pol_Rpb1_R	coord: 1677..1690 e-value: 0.5 score: 10.8 coord: 1705..1718 e-value: 0.003 score: 17.8 coord: 1766..1779 e-value: 0.17 score: 12.3 coord: 1780..1793 e-value: 0.19 score: 12.2 coord: 1579..1592 e-value: 1.2 score: 9.6 coord: 1536..1550 e-value: 2.0 score: 9.0 coord: 1593..1606 e-value: 0.038 score: 14.3 coord: 1621..1634 e-value: 0.55 score: 10.7 coord: 1733..1746 e-value: 1.4 score: 9.5 coord: 1551..1564 e-value: 0.13 score: 12.7 coord: 1691..1704 e-value: 0.49 score: 10.8 coord: 1635..1648 e-value: 0.11 score: 12.9 coord: 1607..1620 e-value: 0.52 score: 10.8 coord: 1565..1578 e-value: 0.0029 score: 17.9 coord: 1649..1662 e-value: 0.0076 score: 16.6 coord: 1719..1732 e-value: 0.43 score: 11.0 coord: 1663..1676 e-value: 0.54 score: 10.7
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1683..1689
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1676..1682
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1772..1778
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1704..1710
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1669..1675
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1779..1785
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1627..1633
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1620..1626
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1786..1792
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1718..1724
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1606..1612
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1765..1771
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1613..1619
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1725..1731
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1690..1696
IPR007075	RNA polymerase Rpb1, domain 6	PFAM	PF04992	RNA_pol_Rpb1_6	coord: 891..1075 e-value: 6.9E-65 score: 218.4
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 825..1415 e-value: 2.0E-105 score: 352.6
IPR007073	RNA polymerase Rpb1, domain 7	PFAM	PF04990	RNA_pol_Rpb1_7	coord: 1160..1294 e-value: 3.2E-53 score: 179.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G127870.1	Chy6G127870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0001055	RNA polymerase II activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity