Chy6G127860 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G127860
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Peptide methionine sulfoxide reductase MrsB
Location	chrH06: 26592098 .. 26592478 (-)
RNA-Seq Expression	Chy6G127860
Synteny	Chy6G127860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATCTATTCCTGTACAGAATGCGGAACTAATCTCAATCTCAATTCCAGTCATCTCTTCCCGCCGGATTTCTATTTCGAGGCCGGAAACAAGGGAACCCTTTCGTTTTCCTTCATCGACTCCACCAAGTTCCGTCTCGAGAAAGAGGACAAGCTCCGACCATTCTTCGAGACCCTCAACTATTGGGGAATCCAGCGTAAACGGACCAAGCTCAAGTGCAACTCATGTGCGCATCTTGTCGGCTATGTTTACGATGATGGCCCCCCTCTTACTGATAGTCCAGGTCAGTTCCACTTCGGACCTAGCCAAGTTATTCCCCGAGCTCCTAGGTACAGATTCAAGATCAAGGCTCTCCGGATTACCTCAGAGAGTTGA

mRNA sequence

ATGGCTTCCATCTATTCCTGTACAGAATGCGGAACTAATCTCAATCTCAATTCCAGTCATCTCTTCCCGCCGGATTTCTATTTCGAGGCCGGAAACAAGGGAACCCTTTCGTTTTCCTTCATCGACTCCACCAAGTTCCGTCTCGAGAAAGAGGACAAGCTCCGACCATTCTTCGAGACCCTCAACTATTGGGGAATCCAGCGTAAACGGACCAAGCTCAAGTGCAACTCATGTGCGCATCTTGTCGGCTATGTTTACGATGATGGCCCCCCTCTTACTGATAGTCCAGGTCAGTTCCACTTCGGACCTAGCCAAGTTATTCCCCGAGCTCCTAGGTACAGATTCAAGATCAAGGCTCTCCGGATTACCTCAGAGAGTTGA

Coding sequence (CDS)

ATGGCTTCCATCTATTCCTGTACAGAATGCGGAACTAATCTCAATCTCAATTCCAGTCATCTCTTCCCGCCGGATTTCTATTTCGAGGCCGGAAACAAGGGAACCCTTTCGTTTTCCTTCATCGACTCCACCAAGTTCCGTCTCGAGAAAGAGGACAAGCTCCGACCATTCTTCGAGACCCTCAACTATTGGGGAATCCAGCGTAAACGGACCAAGCTCAAGTGCAACTCATGTGCGCATCTTGTCGGCTATGTTTACGATGATGGCCCCCCTCTTACTGATAGTCCAGGTCAGTTCCACTTCGGACCTAGCCAAGTTATTCCCCGAGCTCCTAGGTACAGATTCAAGATCAAGGCTCTCCGGATTACCTCAGAGAGTTGA

Protein sequence

MASIYSCTECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETLNYWGIQRKRTKLKCNSCAHLVGYVYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKALRITSES*

Homology

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BLAST of Chy6G127860 vs. ExPASy TrEMBL
Match: A0A0A0L4W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002520 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.5e-68
Identity = 124/126 (98.41%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MASIYSCTECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET 60
           MASIYSCTECGTNLNLNS+HLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET
Sbjct: 1   MASIYSCTECGTNLNLNSTHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET 60

Query: 61  LNYWGIQRKRTKLKCNSCAHLVGYVYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL 120
           LNYWGIQRKRTKLKCNSC HLVGYVYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL
Sbjct: 61  LNYWGIQRKRTKLKCNSCGHLVGYVYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL 120

Query: 121 RITSES 127
           RITSES
Sbjct: 121 RITSES 126

[Close]

BLAST of Chy6G127860 vs. ExPASy TrEMBL
Match: A0A1S3BJW2 (uncharacterized protein LOC103490667 OS=Cucumis melo OX=3656 GN=LOC103490667 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 2.7e-67
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MASIYSCTECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET 60
           MASIYSC+ECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET
Sbjct: 1   MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET 60

Query: 61  LNYWGIQRKRTKLKCNSCAHLVGYVYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL 120
           LNYWGIQRKRTKLKC SC HLVGY+YDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL
Sbjct: 61  LNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL 120

Query: 121 RITSES 127
           RITSE+
Sbjct: 121 RITSET 126

[Close]

BLAST of Chy6G127860 vs. ExPASy TrEMBL
Match: A0A6J1HK24 (uncharacterized protein LOC111465232 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465232 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.3e-64
Identity = 117/126 (92.86%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MASIYSCTECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET 60
           MASIYSC ECG NLNLNSSHLFPPDFYFEAGNKGTLSFS IDSTKFRLEKEDKLRPFFET
Sbjct: 1   MASIYSCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET 60

Query: 61  LNYWGIQRKRTKLKCNSCAHLVGYVYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL 120
           +NYWGIQRKRTK+KCNSCA LVGYVYDDGPPLTDSPGQ+HFGPSQVIPRAPRYRFKIK L
Sbjct: 61  VNYWGIQRKRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKEL 120

Query: 121 RITSES 127
           RI+SES
Sbjct: 121 RISSES 126

[Close]

BLAST of Chy6G127860 vs. ExPASy TrEMBL
Match: A0A6J1E6R2 (uncharacterized protein LOC111431209 OS=Cucurbita moschata OX=3662 GN=LOC111431209 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.8e-63
Identity = 115/126 (91.27%), Postives = 119/126 (94.44%), Query Frame = 0


Query: 1   MASIYSCTECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET 60
           MASIY C ECG NLNLNSSHLFPPDFYFEAGNKGTLSFS IDSTKFRLEKEDKLRPFFET
Sbjct: 1   MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET 60

Query: 61  LNYWGIQRKRTKLKCNSCAHLVGYVYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL 120
           +NYWGIQR RTK+KCNSCA LVGYVYDDGPPLTDSPGQ+HFGPSQVIPRAPRYRFKIK L
Sbjct: 61  VNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKEL 120

Query: 121 RITSES 127
           RI+SES
Sbjct: 121 RISSES 126

[Close]

BLAST of Chy6G127860 vs. ExPASy TrEMBL
Match: A0A5B7CDG7 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_048446 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.7e-62
Identity = 111/126 (88.10%), Postives = 120/126 (95.24%), Query Frame = 0


Query: 1   MASIYSCTECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET 60
           MASIYSCTECGTNLNL+++HLFPPDFYFEAGNKGTLSFS ID TKF+LEKEDK+RPFFET
Sbjct: 1   MASIYSCTECGTNLNLHTNHLFPPDFYFEAGNKGTLSFSMIDDTKFKLEKEDKIRPFFET 60

Query: 61  LNYWGIQRKRTKLKCNSCAHLVGYVYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL 120
           LNYWGIQRKRTK+ CNSC  +VGYVYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFK KAL
Sbjct: 61  LNYWGIQRKRTKIMCNSCGRVVGYVYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKTKAL 120

Query: 121 RITSES 127
           RI+SE+
Sbjct: 121 RISSET 126

[Close]

BLAST of Chy6G127860 vs. NCBI nr
Match: XP_004146165.1 (uncharacterized protein At4g08330, chloroplastic [Cucumis sativus] >KGN55632.1 hypothetical protein Csa_010173 [Cucumis sativus])

HSP 1 Score: 265 bits (677), Expect = 1.68e-89
Identity = 124/126 (98.41%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MASIYSCTECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET 60
           MASIYSCTECGTNLNLNS+HLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET
Sbjct: 1   MASIYSCTECGTNLNLNSTHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET 60

Query: 61  LNYWGIQRKRTKLKCNSCAHLVGYVYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL 120
           LNYWGIQRKRTKLKCNSC HLVGYVYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL
Sbjct: 61  LNYWGIQRKRTKLKCNSCGHLVGYVYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL 120

Query: 121 RITSES 126
           RITSES
Sbjct: 121 RITSES 126

[Close]

BLAST of Chy6G127860 vs. NCBI nr
Match: XP_008448515.1 (PREDICTED: uncharacterized protein LOC103490667 [Cucumis melo])

HSP 1 Score: 261 bits (666), Expect = 8.03e-88
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MASIYSCTECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET 60
           MASIYSC+ECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET
Sbjct: 1   MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET 60

Query: 61  LNYWGIQRKRTKLKCNSCAHLVGYVYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL 120
           LNYWGIQRKRTKLKC SC HLVGY+YDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL
Sbjct: 61  LNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL 120

Query: 121 RITSES 126
           RITSE+
Sbjct: 121 RITSET 126

[Close]

BLAST of Chy6G127860 vs. NCBI nr
Match: XP_038903300.1 (uncharacterized protein LOC120089928 [Benincasa hispida])

HSP 1 Score: 260 bits (665), Expect = 1.14e-87
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MASIYSCTECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET 60
           MASIYSC ECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET
Sbjct: 1   MASIYSCIECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET 60

Query: 61  LNYWGIQRKRTKLKCNSCAHLVGYVYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL 120
           +NYWGIQRKRTKLKCNSC HLVGY+YDDGPPLTDSPGQ+HFGPSQVIPRAPRYRFKIKAL
Sbjct: 61  VNYWGIQRKRTKLKCNSCGHLVGYLYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKAL 120

Query: 121 RITSES 126
           RITSES
Sbjct: 121 RITSES 126

[Close]

BLAST of Chy6G127860 vs. NCBI nr
Match: XP_022965337.1 (uncharacterized protein LOC111465232 isoform X2 [Cucurbita maxima])

HSP 1 Score: 252 bits (643), Expect = 2.59e-84
Identity = 117/126 (92.86%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MASIYSCTECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET 60
           MASIYSC ECG NLNLNSSHLFPPDFYFEAGNKGTLSFS IDSTKFRLEKEDKLRPFFET
Sbjct: 1   MASIYSCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET 60

Query: 61  LNYWGIQRKRTKLKCNSCAHLVGYVYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL 120
           +NYWGIQRKRTK+KCNSCA LVGYVYDDGPPLTDSPGQ+HFGPSQVIPRAPRYRFKIK L
Sbjct: 61  VNYWGIQRKRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKEL 120

Query: 121 RITSES 126
           RI+SES
Sbjct: 121 RISSES 126

[Close]

BLAST of Chy6G127860 vs. NCBI nr
Match: XP_023551931.1 (uncharacterized protein LOC111809759 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248 bits (634), Expect = 6.12e-83
Identity = 115/126 (91.27%), Postives = 120/126 (95.24%), Query Frame = 0


Query: 1   MASIYSCTECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET 60
           MASIY C ECG NLNLNSSHLFPPDFYFEAGNKGTLSFS IDSTKFRLEKEDKLRPFFET
Sbjct: 1   MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET 60

Query: 61  LNYWGIQRKRTKLKCNSCAHLVGYVYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL 120
           +NYWGIQRKRTK+KCNSCA LVGYVYDDGPPLT+SPGQ+HFGPSQVIPRAPRYRFKIK L
Sbjct: 61  VNYWGIQRKRTKIKCNSCARLVGYVYDDGPPLTESPGQYHFGPSQVIPRAPRYRFKIKEL 120

Query: 121 RITSES 126
           RI+SES
Sbjct: 121 RISSES 126

[Close]

BLAST of Chy6G127860 vs. TAIR 10
Match: AT2G17705.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08330.1); Has 135 Blast hits to 135 proteins in 32 species: Archae - 5; Bacteria - 29; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 212.6 bits (540), Expect = 1.8e-55
Identity = 91/125 (72.80%), Postives = 111/125 (88.80%), Query Frame = 0


Query: 2   ASIYSCTECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFETL 61
           ++IY+C ECG++LNLN + LFPPDFYFEAGNKGTLSF+ +D+ KFR EKEDK+ PFFETL
Sbjct: 3   STIYTCKECGSDLNLNPNDLFPPDFYFEAGNKGTLSFAAVDAEKFRFEKEDKIMPFFETL 62

Query: 62  NYWGIQRKRTKLKCNSCAHLVGYVYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKALR 121
           NYWGIQRKRTK+KC SC HL+GY+YDDGPPLT   GQ+ FGPSQVIPRAPRYRFK KA++
Sbjct: 63  NYWGIQRKRTKIKCTSCNHLIGYIYDDGPPLTGGIGQYGFGPSQVIPRAPRYRFKTKAVQ 122

Query: 122 ITSES 127
           ++S++
Sbjct: 123 VSSQT 127

The following BLAST results are available for this feature:

BLAST of Chy6G127860 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G127860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4W0	1.5e-68	98.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002520 PE=4 SV=1	[more]
A0A1S3BJW2	2.7e-67	96.03	uncharacterized protein LOC103490667 OS=Cucumis melo OX=3656 GN=LOC103490667 PE=...	[more]
A0A6J1HK24	1.3e-64	92.86	uncharacterized protein LOC111465232 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1E6R2	1.8e-63	91.27	uncharacterized protein LOC111431209 OS=Cucurbita moschata OX=3662 GN=LOC1114312...	[more]
A0A5B7CDG7	2.7e-62	88.10	Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_048446 PE=4 SV=1	[more]

BLAST of Chy6G127860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146165.1	1.68e-89	98.41	uncharacterized protein At4g08330, chloroplastic [Cucumis sativus] >KGN55632.1 h...	[more]
XP_008448515.1	8.03e-88	96.03	PREDICTED: uncharacterized protein LOC103490667 [Cucumis melo]	[more]
XP_038903300.1	1.14e-87	96.03	uncharacterized protein LOC120089928 [Benincasa hispida]	[more]
XP_022965337.1	2.59e-84	92.86	uncharacterized protein LOC111465232 isoform X2 [Cucurbita maxima]	[more]
XP_023551931.1	6.12e-83	91.27	uncharacterized protein LOC111809759 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Chy6G127860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17705.1	1.8e-55	72.80	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33674	METHIONINE-S-OXIDE REDUCTASE	coord: 1..125
None	No IPR available	PANTHER	PTHR33674:SF5	METHIONINE-S-OXIDE REDUCTASE	coord: 1..125
IPR011057	Mss4-like superfamily	SUPERFAMILY	51316	Mss4-like	coord: 4..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G127860.1	Chy6G127860.1	mRNA