Chy6G125200 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G125200
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	ycf49-like protein
Location	chrH06: 23894730 .. 23897120 (+)
RNA-Seq Expression	Chy6G125200
Synteny	Chy6G125200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACTCACTTCCCCACTCTTCTATTCCTTTTCAATTCCCAAATCCCCACTCCCAATTTCCACAGATTTTGCCCCTACTTCTCAACTTCCTACCGGAGTCTCATTCCGGCGACCCATCTCCCGTCTGGGTTTTCCCTCCAAAACCATGGTGGTTTTGCTCGGTACGGGTTTCACTCTTGCCCTTTTGGGACCTGAATCCGCTTCTGCTGCCACGGAATTGTCATCTTCGCTGCTTTTTAACGAGCCCCAAAATGCTCTCTCCTTGCCCACCTGGGCCATTCATGTTTCCAGCGTTGTTGAATGGTGAGGATTCATCAATTCTCTTTTGTAATGATTTTCACGAAACTTGTGTAATTTTGTTTGATGTTCAAATTTAAATCTTCATTGAAGTAGGGTTACAAACAGAATAGACTGTAGTTATTGTCTTCATTGTGCATGTAAGAAGTGATAAGTTCTTCAAATTGATTACACAGAGATATCTTTTCAGGTAATATCTGAGAAGTGTAGAAATATTGCTGCATATTTGATGATAACTATACTAAACCTAAACTCAAAAGCTTTTAGTAAGCTAAGGTATTTTTAATTTCTTGTCTAATTGTGGTTTGATGAATATTTGTACTATTTGGAGAGAAAGTGGCATTATAGGACTTCCAAGGTAGACTATAATGTTATGATAAATCGGTACTAAATCTAGAAATTTCTTTGATTAGTTGTCATGGAAATGAACTTTGGATTTTAGTTACTCATTTGATAGACAATCAATTGAAGGAAAGGGATGAATGGTAAACCCTCTCAATTCTCGCTGGTGACTACCTTGGTTTATAATTTGTTGATCATAAGTCTCGTGTTGTTAGGATTACAGCAATGGCTTTGGTGTGGCAATATGGAGAGAAATCTGGTAATGAGTCTTGGAAAGGACTTTCTTGGGGAATGGTAAGTTCCTTTTTCTTTGTCTCTAATTGCTTTCTCATCTATCTTATAGATAGGAGTTTCTTTTTCTCTGAATATTAAAGAATCCCATCCACTTCTATAGATAATAATTCAAGTAAAAATTACAATGGAATGCTCTATTTAGAGTGGAAAAAGAGGAAATTCATGCTCAGGGAGTCCAAAACCAATATTACCTGAGATGTTATTGTTAAAGTAAACCCATCATTAACAGAGAACCGATGGAAAAAATTGGATTCAATTTACCCTCGATGTCATAGGATCATTCGATTAAAGAAGTATTAACTTCTGTTGGCTGTTTTCGATGAAGTCATAATCTGGCTCTGTAGGTTATCAAAGCTTTTAGATTTCTTTTGAAGGGCTCAACTCAATGACTCATAGACAGATTACAGATAACTAACAATTTTTAACTTGAGCAGGTACCATTGCTAGGTGGAGCATTTTGTGCTTGCACATGGCATTTTTTCTACAACTCTGAGTCTCTTGAGGTACAGTAAGTTTTGGATTTCGCAAGATCTTTCTGGCCTAATTGAAATACCCGGTACTGTTCATATATTCGAAATAATTCGTACAAATTTTTAGTTTATGATCCTGATGATTTTTATTTAGGAAACTGCTCTGCTATTGCTTATTGGGTTGATTTCTGGTTAGAATGAAAGACAGTTTGATGAATTGGATTTTCTTGATCTCGGTTTAGTTGTTTTAATCTTTCTTGAAACCAATTATTTAGCTCAGTAGTCAATTCATAATTTCAAGGTTATTGTTTCTTAAAAATTAATAGAAGAGACGAAAACCACCAACTCATTTCTCTTCCTTTACTTTGCTTCACTCTTACTTTAAGTTTCTTTCAAATTACTTCCTGTATAACCATTTGTTGGGCAACCACGCAAGTAAATTCCTTATCTCATATATGATTGTGAACAACTTGAAGGTTCAAAGTTGACCAGGAAAAAGAAGGGGAAAACCGTAGAAAAACTTATTCAGACTGATCTTTCTCTGGCTTTAGGTTAATTTAATAGTATTCTGATTCTATTAGCAAAGTTCCAAAAGAACAAGAGCAACCTTACTGTGTAAAGTATATAGAGTGGTCTCTCTCTCTCTCTCTTTGAGTTTAAGGCTAGGATCATTTAGATTCCATTGCTGTAGTTTCAAAAGCATACGGCAATCTTACCATGAAATAAATATAGAATTAGCTGTCTTTCACACTTCAATTTGATTATTTTTTGTCAGAAAATTTAGTTGTATTAGTGCAGTAATTTGAAAAGAACTTTAAGTTCTTCAGTCCTCGCCATGAAATGGATATAAAATGACTTGGATTTGGTGTTGAGTGCAGGTTTTGGTGGCCATTCAGGCAATGCTAACAGCTATAGGAAATGCCACAATGTGCATTGCTGCATTTCGCATTTACAAATCATCACAAGAACGTTCAAAGAACTTGTAA

mRNA sequence

ATGTCACTCACTTCCCCACTCTTCTATTCCTTTTCAATTCCCAAATCCCCACTCCCAATTTCCACAGATTTTGCCCCTACTTCTCAACTTCCTACCGGAGTCTCATTCCGGCGACCCATCTCCCGTCTGGGTTTTCCCTCCAAAACCATGGTGGTTTTGCTCGGTACGGGTTTCACTCTTGCCCTTTTGGGACCTGAATCCGCTTCTGCTGCCACGGAATTGTCATCTTCGCTGCTTTTTAACGAGCCCCAAAATGCTCTCTCCTTGCCCACCTGGGCCATTCATGTTTCCAGCGTTGTTGAATGGATTACAGCAATGGCTTTGGTGTGGCAATATGGAGAGAAATCTGGTAATGAGTCTTGGAAAGGACTTTCTTGGGGAATGGTACCATTGCTAGGTGGAGCATTTTGTGCTTGCACATGGCATTTTTTCTACAACTCTGAGTCTCTTGAGGTTTTGGTGGCCATTCAGGCAATGCTAACAGCTATAGGAAATGCCACAATGTGCATTGCTGCATTTCGCATTTACAAATCATCACAAGAACGTTCAAAGAACTTGTAA

Coding sequence (CDS)

ATGTCACTCACTTCCCCACTCTTCTATTCCTTTTCAATTCCCAAATCCCCACTCCCAATTTCCACAGATTTTGCCCCTACTTCTCAACTTCCTACCGGAGTCTCATTCCGGCGACCCATCTCCCGTCTGGGTTTTCCCTCCAAAACCATGGTGGTTTTGCTCGGTACGGGTTTCACTCTTGCCCTTTTGGGACCTGAATCCGCTTCTGCTGCCACGGAATTGTCATCTTCGCTGCTTTTTAACGAGCCCCAAAATGCTCTCTCCTTGCCCACCTGGGCCATTCATGTTTCCAGCGTTGTTGAATGGATTACAGCAATGGCTTTGGTGTGGCAATATGGAGAGAAATCTGGTAATGAGTCTTGGAAAGGACTTTCTTGGGGAATGGTACCATTGCTAGGTGGAGCATTTTGTGCTTGCACATGGCATTTTTTCTACAACTCTGAGTCTCTTGAGGTTTTGGTGGCCATTCAGGCAATGCTAACAGCTATAGGAAATGCCACAATGTGCATTGCTGCATTTCGCATTTACAAATCATCACAAGAACGTTCAAAGAACTTGTAA

Protein sequence

MSLTSPLFYSFSIPKSPLPISTDFAPTSQLPTGVSFRRPISRLGFPSKTMVVLLGTGFTLALLGPESASAATELSSSLLFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAAFRIYKSSQERSKNL*

Homology

[Close]

BLAST of Chy6G125200 vs. ExPASy Swiss-Prot
Match: Q55720 (Ycf49-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll0608 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-28
Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 85  NALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFF 144
           NALS+PTW +HVSSV+EWI A+ALV +Y  K+G   W+ L+WGMVP L  A CACTWHFF
Sbjct: 2   NALSIPTWMVHVSSVIEWIVAIALVSRYATKAGYGHWRALAWGMVPALVSATCACTWHFF 61

Query: 145 YNSESLEVLVAIQAMLTAIGNATMCIAAFRIYKSSQERS 184
            N+  L+ LV +QA+ T IGN T+C+AA+ IY+ S + S
Sbjct: 62  DNASQLDWLVTLQALTTVIGNITLCLAAWWIYRQSAQPS 100

[Close]

BLAST of Chy6G125200 vs. ExPASy Swiss-Prot
Match: P15811 (Uncharacterized protein ycf49 OS=Cyanophora paradoxa OX=2762 GN=ycf49 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.3e-08
Identity = 34/101 (33.66%), Postives = 49/101 (48.51%), Query Frame = 0


Query: 85  NALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFF 144
           N LS  TW +H+SSV+EW+  +     Y +   N S K   +        A CACT HFF
Sbjct: 2   NVLSYFTWFVHLSSVLEWLNIIYFFLLYTKLKKNLSLKTFIFSFFISFCSALCACTLHFF 61

Query: 145 YNSESLEVLVAIQAMLTAIGNATMCIAAFRIYKSSQERSKN 186
            N      L+ +Q+ LT   N T+  +   IYK    +++N
Sbjct: 62  NNQSFYYFLINLQSFLTLFANITLYFSIL-IYKQQILKNQN 101

[Close]

BLAST of Chy6G125200 vs. ExPASy Swiss-Prot
Match: Q9TM18 (Uncharacterized protein ycf49 OS=Cyanidium caldarium OX=2771 GN=ycf49 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.6e-04
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 86  ALSLPTWAIHVSSVVEWITAMALVW---QYGEKSGNESWKGLSWGMVPLLGGAFCACTWH 145
           +LSLPTW IH+ ++VEW   + L++    + +   + ++  +   +   L G F AC WH
Sbjct: 3   SLSLPTWNIHIVTLVEWSIVIRLIYLFTYFYDIPRSFNFLIIILMIFFFLSGLF-ACCWH 62

Query: 146 FFYNSESLEVLVAIQAMLTAIGN 166
           FF N+  L  +   QA LTA  N
Sbjct: 63  FFNNNSILLWISVAQAALTAFSN 84

[Close]

BLAST of Chy6G125200 vs. ExPASy TrEMBL
Match: A0A0A0L4G0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036550 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 2.9e-97
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MSLTSPLFYSFSIPKSPLPISTDFAPTSQLPTGVSFRRPISRLGFPSKTMVVLLGTGFTL 60
           MSLTSPL YSFSIPKSPLPISTDFAPT QLPTGVSFRRPISRLGFPSKTMVVLLGTGFTL
Sbjct: 1   MSLTSPLLYSFSIPKSPLPISTDFAPTFQLPTGVSFRRPISRLGFPSKTMVVLLGTGFTL 60

Query: 61  ALLGPESASAATELSSSLLFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNES 120
           ALLGPESASAATELSSSLLFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNES
Sbjct: 61  ALLGPESASAATELSSSLLFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNES 120

Query: 121 WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAAFRIYKSSQ 180
           WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAAFRIYKSSQ
Sbjct: 121 WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAAFRIYKSSQ 180

Query: 181 ERSKNL 187
           ERSKNL
Sbjct: 181 ERSKNL 186

[Close]

BLAST of Chy6G125200 vs. ExPASy TrEMBL
Match: A0A1S3BLS2 (ycf49-like protein OS=Cucumis melo OX=3656 GN=LOC103490947 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.4e-96
Identity = 182/186 (97.85%), Postives = 183/186 (98.39%), Query Frame = 0


Query: 1   MSLTSPLFYSFSIPKSPLPISTDFAPTSQLPTGVSFRRPISRLGFPSKTMVVLLGTGFTL 60
           MSLTSPL YSFSIPKSPLPISTDFAPT+QLPTGVSFRRPISRLGFPSK MVVLLGTGFTL
Sbjct: 1   MSLTSPLLYSFSIPKSPLPISTDFAPTTQLPTGVSFRRPISRLGFPSKAMVVLLGTGFTL 60

Query: 61  ALLGPESASAATELSSSLLFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNES 120
           ALLGPESASAATEL SSLLFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNES
Sbjct: 61  ALLGPESASAATELQSSLLFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNES 120

Query: 121 WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAAFRIYKSSQ 180
           WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAAFRIYKSSQ
Sbjct: 121 WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAAFRIYKSSQ 180

Query: 181 ERSKNL 187
           ERSKNL
Sbjct: 181 ERSKNL 186

[Close]

BLAST of Chy6G125200 vs. ExPASy TrEMBL
Match: A0A5D3D7E0 (Ycf49-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001180 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.3e-94
Identity = 182/194 (93.81%), Postives = 183/194 (94.33%), Query Frame = 0


Query: 1   MSLTSPLFYSFSIPKSPLPISTDFAPTSQLPTGVSFRRPISRLGFPSKTMVVLLGTGFTL 60
           MSLTSPL YSFSIPKSPLPISTDFAPT+QLPTGVSFRRPISRLGFPSK MVVLLGTGFTL
Sbjct: 1   MSLTSPLLYSFSIPKSPLPISTDFAPTTQLPTGVSFRRPISRLGFPSKAMVVLLGTGFTL 60

Query: 61  ALLGPESASAATELSSSLLFNEPQNALSLPTWAIHVSSVVEW--------ITAMALVWQY 120
           ALLGPESASAATEL SSLLFNEPQNALSLPTWAIHVSSVVEW        ITAMALVWQY
Sbjct: 61  ALLGPESASAATELQSSLLFNEPQNALSLPTWAIHVSSVVEWWGFINSLLITAMALVWQY 120

Query: 121 GEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAA 180
           GEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAA
Sbjct: 121 GEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAA 180

Query: 181 FRIYKSSQERSKNL 187
           FRIYKSSQERSKNL
Sbjct: 181 FRIYKSSQERSKNL 194

[Close]

BLAST of Chy6G125200 vs. ExPASy TrEMBL
Match: A0A6J1DH09 (uncharacterized protein LOC111020415 OS=Momordica charantia OX=3673 GN=LOC111020415 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 6.4e-73
Identity = 154/199 (77.39%), Postives = 166/199 (83.42%), Query Frame = 0


Query: 1   MSLTSPLFYSFSIPKSPL--------PISTDFAPTSQLPTGVSFRRPI-SRLGFPSKTMV 60
           M LTS L +SFS PK P+        P S DFA  S+ P G+ FRR I + L   SK+MV
Sbjct: 1   MPLTSTLLHSFSNPKCPISSSSSSSPPRSRDFAAPSKXPPGIRFRRIIGAGLVLDSKSMV 60

Query: 61  VLLGTGFTLALLGPESASAATEL----SSSLLFNEPQNALSLPTWAIHVSSVVEWITAMA 120
           VLLGTGFTLALLGPESASAA EL    +SSL FNEPQNALSLPTWAIHVSSVVEWITAMA
Sbjct: 61  VLLGTGFTLALLGPESASAAAELQALGASSLQFNEPQNALSLPTWAIHVSSVVEWITAMA 120

Query: 121 LVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNAT 180
           LVWQYGEKSGNE+WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVA+QA+LTA+GNAT
Sbjct: 121 LVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVGNAT 180

Query: 181 MCIAAFRIYKSSQERSKNL 187
           MCIAAFRIYK SQERS+NL
Sbjct: 181 MCIAAFRIYK-SQERSRNL 198

[Close]

BLAST of Chy6G125200 vs. ExPASy TrEMBL
Match: A0A6J1E5R7 (uncharacterized protein LOC111431033 OS=Cucurbita moschata OX=3662 GN=LOC111431033 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.4e-72
Identity = 148/193 (76.68%), Postives = 158/193 (81.87%), Query Frame = 0


Query: 1   MSLTSPLFYSFSIPKSP-------LPISTDFAPTSQLPTGVSFRRPISRLGFPSKTMVVL 60
           MS +S   +SFSIPK P       LP S   A TSQLPTG+  RR  +     SK+++VL
Sbjct: 36  MSFSSTFLHSFSIPKCPISSSSSSLPTSRASAATSQLPTGIRLRRGGAGRVLDSKSILVL 95

Query: 61  LGTGFTLALLGPESASAATELSSSLLFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYG 120
           LGTGFTL+ LGP S SAATE  SSLLFNEPQNALSLPTWA+HVS VVEWI AMALVWQYG
Sbjct: 96  LGTGFTLSFLGPASPSAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQYG 155

Query: 121 EKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAAF 180
           EKSGNESWKGLSWGMVPLLGGAFCACT HFFYNSESLEVLVA+QAMLT IGNATMCIAAF
Sbjct: 156 EKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAF 215

Query: 181 RIYKSSQERSKNL 187
           RIYKSSQERSKNL
Sbjct: 216 RIYKSSQERSKNL 228

[Close]

BLAST of Chy6G125200 vs. NCBI nr
Match: XP_004147956.1 (uncharacterized protein LOC101205605 [Cucumis sativus] >XP_031738510.1 uncharacterized protein LOC101205605 [Cucumis sativus] >KGN55929.1 hypothetical protein Csa_010924 [Cucumis sativus])

HSP 1 Score: 367 bits (943), Expect = 4.23e-128
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MSLTSPLFYSFSIPKSPLPISTDFAPTSQLPTGVSFRRPISRLGFPSKTMVVLLGTGFTL 60
           MSLTSPL YSFSIPKSPLPISTDFAPT QLPTGVSFRRPISRLGFPSKTMVVLLGTGFTL
Sbjct: 1   MSLTSPLLYSFSIPKSPLPISTDFAPTFQLPTGVSFRRPISRLGFPSKTMVVLLGTGFTL 60

Query: 61  ALLGPESASAATELSSSLLFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNES 120
           ALLGPESASAATELSSSLLFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNES
Sbjct: 61  ALLGPESASAATELSSSLLFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNES 120

Query: 121 WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAAFRIYKSSQ 180
           WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAAFRIYKSSQ
Sbjct: 121 WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAAFRIYKSSQ 180

Query: 181 ERSKNL 186
           ERSKNL
Sbjct: 181 ERSKNL 186

[Close]

BLAST of Chy6G125200 vs. NCBI nr
Match: XP_008448929.1 (PREDICTED: ycf49-like protein [Cucumis melo])

HSP 1 Score: 365 bits (937), Expect = 3.48e-127
Identity = 182/186 (97.85%), Postives = 183/186 (98.39%), Query Frame = 0


Query: 1   MSLTSPLFYSFSIPKSPLPISTDFAPTSQLPTGVSFRRPISRLGFPSKTMVVLLGTGFTL 60
           MSLTSPL YSFSIPKSPLPISTDFAPT+QLPTGVSFRRPISRLGFPSK MVVLLGTGFTL
Sbjct: 1   MSLTSPLLYSFSIPKSPLPISTDFAPTTQLPTGVSFRRPISRLGFPSKAMVVLLGTGFTL 60

Query: 61  ALLGPESASAATELSSSLLFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNES 120
           ALLGPESASAATEL SSLLFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNES
Sbjct: 61  ALLGPESASAATELQSSLLFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNES 120

Query: 121 WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAAFRIYKSSQ 180
           WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAAFRIYKSSQ
Sbjct: 121 WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAAFRIYKSSQ 180

Query: 181 ERSKNL 186
           ERSKNL
Sbjct: 181 ERSKNL 186

[Close]

BLAST of Chy6G125200 vs. NCBI nr
Match: TYK19464.1 (ycf49-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 358 bits (918), Expect = 3.64e-124
Identity = 182/194 (93.81%), Postives = 183/194 (94.33%), Query Frame = 0


Query: 1   MSLTSPLFYSFSIPKSPLPISTDFAPTSQLPTGVSFRRPISRLGFPSKTMVVLLGTGFTL 60
           MSLTSPL YSFSIPKSPLPISTDFAPT+QLPTGVSFRRPISRLGFPSK MVVLLGTGFTL
Sbjct: 1   MSLTSPLLYSFSIPKSPLPISTDFAPTTQLPTGVSFRRPISRLGFPSKAMVVLLGTGFTL 60

Query: 61  ALLGPESASAATELSSSLLFNEPQNALSLPTWAIHVSSVVEW--------ITAMALVWQY 120
           ALLGPESASAATEL SSLLFNEPQNALSLPTWAIHVSSVVEW        ITAMALVWQY
Sbjct: 61  ALLGPESASAATELQSSLLFNEPQNALSLPTWAIHVSSVVEWWGFINSLLITAMALVWQY 120

Query: 121 GEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAA 180
           GEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAA
Sbjct: 121 GEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAA 180

Query: 181 FRIYKSSQERSKNL 186
           FRIYKSSQERSKNL
Sbjct: 181 FRIYKSSQERSKNL 194

[Close]

BLAST of Chy6G125200 vs. NCBI nr
Match: XP_038876845.1 (ycf49-like protein [Benincasa hispida])

HSP 1 Score: 308 bits (789), Expect = 1.22e-104
Identity = 157/186 (84.41%), Postives = 165/186 (88.71%), Query Frame = 0


Query: 1   MSLTSPLFYSFSIPKSPLPISTDFAPTSQLPTGVSFRRPISRLGFPSKTMVVLLGTGFTL 60
           MSL+S   YSFSIPKSP   S+   PTS+   G+ FRR  + L F SKTM++ LGTGFTL
Sbjct: 1   MSLSSTFLYSFSIPKSPFSSSSSL-PTSRYFAGIPFRRRAAALPFGSKTMMLFLGTGFTL 60

Query: 61  ALLGPESASAATELSSSLLFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNES 120
           ALLGPESASAAT+L SSLLFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNES
Sbjct: 61  ALLGPESASAATQLQSSLLFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNES 120

Query: 121 WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAAFRIYKSSQ 180
           WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAAFRIYKSSQ
Sbjct: 121 WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAAFRIYKSSQ 180

Query: 181 ERSKNL 186
           E SKNL
Sbjct: 181 ESSKNL 185

[Close]

BLAST of Chy6G125200 vs. NCBI nr
Match: KAG7015633.1 (hypothetical protein SDJN02_23270, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 288 bits (738), Expect = 1.02e-96
Identity = 150/194 (77.32%), Postives = 159/194 (81.96%), Query Frame = 0


Query: 1   MSLTSPLFYSFSIPKSP--------LPISTDFAPTSQLPTGVSFRRPISRLGFPSKTMVV 60
           MS +S   +SFSIPK P        LP S D A TSQLPTG+  RR  +     SK++VV
Sbjct: 2   MSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVV 61

Query: 61  LLGTGFTLALLGPESASAATELSSSLLFNEPQNALSLPTWAIHVSSVVEWITAMALVWQY 120
           LLGTGFTL+LLGP   SAATE  SSLLFNEPQNALSLPTWA+HVS VVEWI AMALVWQY
Sbjct: 62  LLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQY 121

Query: 121 GEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAA 180
           GEKSGNESWKGLSWGMVPLLGGAFCACT HFFYNSESLEVLVA+QAMLT IGNATMCIAA
Sbjct: 122 GEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAA 181

Query: 181 FRIYKSSQERSKNL 186
           FRIYKSSQERSKNL
Sbjct: 182 FRIYKSSQERSKNL 195

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BLAST of Chy6G125200 vs. TAIR 10
Match: AT4G22830.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634). )

HSP 1 Score: 183.7 bits (465), Expect = 1.3e-46
Identity = 97/168 (57.74%), Postives = 115/168 (68.45%), Query Frame = 0


Query: 17  PLPISTDFAPTSQLPTGVSFRRPISRLGFPSKTMVVLLGTGFTLALL---GPESASAATE 76
           P  ++T   P  ++ +      P++  G        L+GT    A     GP+ A+A   
Sbjct: 36  PSSLTTSNEPVIRIRSRSLIHDPVALSG--------LIGTSLVAAAFITAGPD-ATALAA 95

Query: 77  LSSSLLFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNESWKGLSWGMVPLLG 136
           +  SL  +EP NALSLPTWA+HVSSVVEWITAMALVW+YGE+ G ESWKGLSWGMVPLLG
Sbjct: 96  VVDSLQLSEPSNALSLPTWAVHVSSVVEWITAMALVWKYGERKGYESWKGLSWGMVPLLG 155

Query: 137 GAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAAFRIYKSSQE 182
           GA CACTWHFFYN ESLEVLVA+QA LT  GN T+CIAAFRI K S +
Sbjct: 156 GALCACTWHFFYNDESLEVLVALQAALTVFGNITLCIAAFRINKLSSK 194

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BLAST of Chy6G125200 vs. TAIR 10
Match: AT4G22830.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634); Has 319 Blast hits to 317 proteins in 103 species: Archae - 0; Bacteria - 147; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). )

HSP 1 Score: 183.3 bits (464), Expect = 1.7e-46
Identity = 101/176 (57.39%), Postives = 119/176 (67.61%), Query Frame = 0


Query: 9   YSFSIPKSPLPISTDFAPTSQLPTGVSFRRPISRLGFPSKTMVVLLGTGFTLALL---GP 68
           +S S P S L  S +  P  ++ +      P++  G        L+GT    A     GP
Sbjct: 22  HSESRPASSLTTSNE--PVIRIRSRSLIHDPVALSG--------LIGTSLVAAAFITAGP 81

Query: 69  ESASAATELSSSLLFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNESWKGLS 128
           + A+A   +  SL  +EP NALSLPTWA+HVSSVVEWITAMALVW+YGE+ G ESWKGLS
Sbjct: 82  D-ATALAAVVDSLQLSEPSNALSLPTWAVHVSSVVEWITAMALVWKYGERKGYESWKGLS 141

Query: 129 WGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATMCIAAFRIYKSSQE 182
           WGMVPLLGGA CACTWHFFYN ESLEVLVA+QA LT  GN T+CIAAFRI K S +
Sbjct: 142 WGMVPLLGGALCACTWHFFYNDESLEVLVALQAALTVFGNITLCIAAFRINKLSSK 186

The following BLAST results are available for this feature:

BLAST of Chy6G125200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q55720	1.6e-28	57.58	Ycf49-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]
P15811	5.3e-08	33.66	Uncharacterized protein ycf49 OS=Cyanophora paradoxa OX=2762 GN=ycf49 PE=3 SV=1	[more]
Q9TM18	1.6e-04	34.94	Uncharacterized protein ycf49 OS=Cyanidium caldarium OX=2771 GN=ycf49 PE=3 SV=1	[more]

BLAST of Chy6G125200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4G0	2.9e-97	98.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036550 PE=4 SV=1	[more]
A0A1S3BLS2	1.4e-96	97.85	ycf49-like protein OS=Cucumis melo OX=3656 GN=LOC103490947 PE=4 SV=1	[more]
A0A5D3D7E0	2.3e-94	93.81	Ycf49-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G0...	[more]
A0A6J1DH09	6.4e-73	77.39	uncharacterized protein LOC111020415 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1E5R7	1.4e-72	76.68	uncharacterized protein LOC111431033 OS=Cucurbita moschata OX=3662 GN=LOC1114310...	[more]

BLAST of Chy6G125200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147956.1	4.23e-128	98.92	uncharacterized protein LOC101205605 [Cucumis sativus] >XP_031738510.1 uncharact...	[more]
XP_008448929.1	3.48e-127	97.85	PREDICTED: ycf49-like protein [Cucumis melo]	[more]
TYK19464.1	3.64e-124	93.81	ycf49-like protein [Cucumis melo var. makuwa]	[more]
XP_038876845.1	1.22e-104	84.41	ycf49-like protein [Benincasa hispida]	[more]
KAG7015633.1	1.02e-96	77.32	hypothetical protein SDJN02_23270, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Chy6G125200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G22830.2	1.3e-46	57.74	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G22830.1	1.7e-46	57.39	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019634	Uncharacterised protein family Ycf49	PFAM	PF10693	DUF2499	coord: 86..173 e-value: 4.7E-39 score: 132.5
None	No IPR available	PANTHER	PTHR33833	NUCLEOLAR-LIKE PROTEIN-RELATED	coord: 39..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G125200.1	Chy6G125200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane