Chy6G124990 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G124990
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	replication factor C subunit 2
Location	chrH06: 23730863 .. 23738165 (+)
RNA-Seq Expression	Chy6G124990
Synteny	Chy6G124990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTTCTTCAGGCAGCAGTAGCAACTACGACATTCCGTGGGTGGAGAAGTACAGGCCCAACAAGGTCACTGACATTGTGGGCAATGAAGATGCAGTTTCTCGTCTCCAAGTCATTGCTCGGGACGGCAACATGCCCAATCTCATATTATCTGTACTCTTCTCCATCTCTAATATTTTCCGTAATTTTCCCTCTTTAATTTGCATTGCACCCATTGGGTTTCTGTTAAATTTTAGTCTGACTATTAACTTGTTTACAATTGGTACTGAAAATGGACTAGTGTATTTAGAGCTATGTGAAGTAGAAAATCATGCAGCTTGAACGTTTTCTTAATGGCTTTGGGGGTTTGGGAACTAGTAAGGCTCGAATTTTATCCTAATTTTTGTTATCATTTTTGGCGGGGTTTTAATGTTCTGTAATCAAATGCACAATTTTTTTTCTAAAAGGGGTTGATGCAAGTGACAAGTAAAAGGCTCTATAAGTGCTAATTTACGTTGTTGATGATTTTTTTTTAATCTACTGCAGCTTGAATTTTGTTGCTATGATGAGGTTTTTGATGAACAAATGTTGTAGGATTAGACAGTTTTGTTAGGAACAAAAGTTTTTCCTTCTGTATTGCTATGGATTTTAATGTATGTTGTTGCTACATGTTTGTTTTCTAGGGTCCGCCAGGAACTGGGAAGACAACCAGTATTTTGGCTCTTGCTCATGAGCTCTTGGGACTGAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGTGAGATGTTCTATGGTTTTTAAATCTCAAAATATTTCAAATGTTACTTGATCTGTGTTTTTTTTCTAATCTGAGTTCTTGTTTAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACATTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGGTAGGTTTCAACGGATATAATGCTAGGGAAGCCCAAACACTTTTTTTGGGGAGAGTGTTCTTGTCAGGCCTGCATGCGAAAAAAAGTGTCCTATTTTATTTTGTATTTTCTTTTCAGTTTCGAACACTCATGGGACACATAAACCTATAAAATTGATTGAGAATTTGAAACAAGAATTTTCTTTGTCTTCTTTTGCTCTGCTCTTCAGTTTCTTACTTTGAGTTCTGTTATTAATTTATTACTTTTGGTGGTGATTATGATTGTGAAAATAATCCAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATTTATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTTCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTGATTCAGGCTGAAAAGGTATCGTTCGTTTATTTGTCATAATGCCTAGAGTTGCATTCTAGACTACATTTCTGTTGTTATAAATATAGTCACTCTGCTAAATTTAATTGTTATTGAAAACAAAATACTACTTAATTATCTTCGGAAGAAATTATCACTTTAGTGGTAGGCTGCAACAGTTTGTTAGATCTCATGTAGTTGATTCATTCTGTATTGGTCTCATTATTCCCTAAACCAACCCCCCCCCGGCAATAGCTAGCTTGTTAAGGAACTGGTCAAGCAATTGGAATACCCATGAAGTGCACATTTGGAAAAGACAGAAGCAATCACTAGTTTCTGCCTTGAATTTTTGTTCACTTGAATTAATAATTTGAGAAAGTGGCTCAACTACTGTTGTTGGAGAAATGTGGAAGTCTAGGTTTTGGTTGAATTACTCTAGAAAGCTCAAGTCTTAAAAAACCAATCATATTTTGTGGAGCGAAGAGGTAAATGACATACCCTTGAGGCGTTTCAATAGTTTCATTGATGGAAGTAAGCTGTTTGATCCTCCATTGCTGAATGGGAAGTTTGCGTGGGCTAATTGTATGGCTGCAACTAAGACTGGTAGATTTTTACTTTCAGAAGGTTGGATTAAGAGGTTTGGTAGCCCTAGACAGTTGAGGGGGCCAAGATTCACCATCAAATCAGTGGCCTATTATTTTGTCTTTAGGTTCTCAGAAATGGTGTTTGAGCTTTTCTACTTTGAGAATATGTGGTTGGAGCACTCTTCTTTCAAGGCCAATATTCTTTTTTTGGTGGAGGACCTTGTCCCATGTGAATGGGAGGGCTTTCGTTCAATGGGCTGGTTGAGACATGAGAGTTTTGAAAGGGGTTGTTAAGTTGTGGAATGAAGATGTTTTTGATATGTTTTTTTTAAACGGAGATAAGCCTCTTAAATTATTATTAATAAAAGAGCCTTAAGCTCAAAGTACAAGAGTATTATACTAAGAGCAAGAGAAAAGAGAATTTAGTCTACTTCTACAACAAAAGCTAAACACAAATTCCAAATAGAAGAGATCAAGCTAAACAAAACCATATTCGAAGAAATCTAATTACAAAGCACAATACAAAATCCTCTCATAAAGAACTGAATTGAAACTAAAAGCTTTCAAGAATATGCAACCGGTTGCCTCGAAATTGCCTAACCAAATTAATCCATAATCCAGAGGAAGCTTGAAAAAGTCTTCCACTATTCAGCATCGGCGTGAAGGATTTACTTGCCACCCATATGAAGGGAATCCAAGAATGACTGAAGTTGGCCTTACATTGAGGAGAAATACATTAAACTGCTGAAGAATCAAATTAGAATAAATTCACAATCAGGAACTATTGATTTTAAATGATCTGGTATTTTGCAAGATCGGGGACAAGAACGAGTAGCAGAAGGCAACTTTGCGGATCCCGACTCTTCCTAGCATTGAAACAGGGCATTGAGATCAGTTTCTAGAGGCTCAAATGTTTCTGACTTTCAAGTTCGGTTGACCTATCCAAATGCTTCAATTCCCCACTACTAATGCTGAAAGGGGAGTCGAAAAATGCTCACCCTTCTTGTTGGATTGATTACCTTGGAGTTAGGCACGGAGAACTCAGAGTACTGAAACTGGGTAGAGTGAGGATTATGAGAAAATGACTTAGAAGAACGGGTTGGGGCTTGAATTTGGGTGCAACTGACTTCCAATAAATCAGGATTAGCCTCTAAAAACAACTTGGAGCTGCTGGAATAAGCTGATGAAAGAGAATGTGCAGTATTTTTCTGAAGCAAAACGGGTACTTGATCATCTAAAATTTGGGCTTTTAAGGAACGTTTTGCCATAATCTTCTTTGATTTTTTCTTCCAAATAAAATACTTCGGAAATGGCTTGAGGTAATGTTGGAAGATCTTAGAAAAATTCTTTCTTTTCAGATTTCCTCGAGAGTCTTTTGATGAGGAAAAAAAATAAGAAGAGGAGATGGAAGCTAAAGATGAAGGGTTGAAAGGAGGAGCAGCCGTTGGTTTCTTGTGGAAAATAGCAGTTATTTTAGCTTTTTGTTCATAGGATTGGAGTAAAGAGGATCACCAAAAAGAGGGCCACTGGCTGGTTGAGAGAACTTTCCCAGCTGTAAAAAGAAGACAGGCGGATTTTTCTCTTTCTTCATTAAATGTGTCTCTTCAACATCTTCTTTCTTGTTCCTTTCAAAACAAAATGTCTTATTCACTCTCCTTTTTAAGTGTGGCTCTTCAAATCCAATAGAGTTCACACTACTTTCCTTGGAGTCCAAATTTAAACTGTCGCTTCAGGGGAGATAATTGGTGCCAACGAGGCTAAAATCTGGTGAGCTCCTTGTTTCAAAGCTTCAAAAGGGTTCCTTTTATATGAAGGAATTTTTTGGATTGATCTTAGGTATTCCACCCTCTCCGGAAAGAATTAATCATCAACAACTCCTTCTTTTAAAGCCTGGTTTAGTCTCTGCAAGTCAAGTGGGTTTGAAAGATTCTCAAATGATAAATGGCCCTTGGTTAACGGAGGAGGCTCAATTTGTTCAAAATCACCAAAGCGTAAGAAAAATATTCGTCGGTTAAAGTCTGTTATTTCTAGTGTAGCTGGTACAAAACTACATTGGTTTCTTTTTCTTGAATCTTTGATTTGGAAACATTAAGAAGGTTAAGCGTTTCATAAGTGATATTTTCCAGACCTCTAAAATGATCTCCATTTGATTGCTCTAATAATCAAGAGGCGTTTTATTTTAATCCATCATCCATAGCCTTCAATAACAGATTGTCTGCTATGTTTACTTTTGCTCCATTTCTCAAACTTTAAATGAAAAGGATCTATTACTTGCCATACCTCTTCTTTTCCAACAAACTCTTCTAGAGATCCTTCAGCCAATTTAATCAAAGCATTCTCTGCAAACAAGGGATTAATGATTTTGCAGCTGGAGAGTCCCCTCAACCAGCCAACAGTCCTCATTTTGGTGATCCTCTTTCCTCCAATCCTACAAACAAAAAGCTAAAAGCTGAAATTATTTTAGCTGCCATTTTCCAAAAGAAATCAATGGCTGCTACTCCTCCTTTCAACCCTTCATCTTCATCTTCAGCTCCCAATCTATTCCTCTTCTCTTTTTTCCTCATCAAAAGGCTCTTGAGGAAATCTAAAAAGAAAGAATTTTTCTAAGATCTTCCAACATTACTTCAAGCAATTTCTGAAGTATTTTATCCGGAAGAAAAAATCAAAGAAGATTATGGAAAAATGTTCCTTAAAAGCCCAAATTTAGATGATCAAGTACCTGTTTTGCTTAAGGAAAATACTGCCCATTCTCTTTCATCAGCTTATTCCAGCAGCTCCAAGCTGTTTGTAGAGACTAATCATGATTTATTGGAAGTCAGTTGCACCCAAATTCAAGCCCCAGCCCGTTCTTCTAAGTCATTTTCTCGTCATCCTCACTTTACCCAATTTGAGTACTTCGAGTTCTCTCTGCCTAACTCCAAGGTTAAATTTCTGAAGGGCTCTCCAAGCAAAACCCCTCACAATCAATCCAACAAGAAGGGTGAGCATTTTTTCAACTCCCCTCTCAGCGTTTGTAGCGAGGAATTGGAGCATTTGGATAGGTCAACCAAACTTGAAAGTCAGAAACATTTGAGCCTCTAGAAACTGATCTCAATGCTCTGTTTCAATGTTAGGAATAGCTAGGATCCGCAAAGTTTCCTTCTGCTACTCGTTCTTGTCCTCGGTCTTGCAAAATACTAGATCATTTAAAATCAATAGTTACTGATTGTGAATTTATTCTAATTTGATTCTTCAACAGTTTAATGTATTTCGCCTCAATGTACGACTAACTTCAGTCATTCTTGGATTTTCCTTCATATGGGTGGCAAGTAAATTCTACATGCCGATGCTGAATAGTGGAATACTTTTTTGAGCTTCCTCTAGATTATGGATTAATTTGATTAGGCAGCCGGTTGCATCTTCTTGAAAGGTTTTAGTTTCAATTTAGTTCTTTATGAGAGAATTTTTCATTATTCTTTGTAATTAGATTTCTTCATATATGGTTTTGTTAAGCTTGATCTCTTCTATTTGGAATTTGCATGACAAGTTTTACTTGGTCGTGTGAACACTATGGATAGGCTACTACAGTAGAAGAAGTTTTCGCTTATGAAGCCTTTGTGTTGTGTTCTTTATTGGAAGGCGGAGGAAGACCTATATCACCTTCTTTGAATTGTTAGTTTGCTAGATCGGTGTGGAACTATTTCTTTCAAGAGTTCCATATTGAGCTAGCTTGCTAGAGAGATGTTTGGGAGACGATCAAGGAGCTCATTCTTCATATGCCTTTCATTGAGAAATACTGTTTTTTATGGGCAGCTGAGGTGTGTGCTATTCTCTGAGATACTTGGGGGGAGAGGAATAATGTAGTGTTTAGGGGTTTGTGGAGAGAGACCATAATGATGTTTGGTTTTTGGTGAAGTTCCATGTTTCTCTTTGAACTTCGGTCTCAAGAACATTTTGTAATTAACTCCTGGGTAGCATCTTACTTAGTTGAGAACCCTTTCTTTATAGGAGTTTTGTTGGTTTTTCTTTTTCTTGTATAATAATCCCCTTTCATGCCTTTACTATTTTTTTATCCCACATAAATGGTAAACTAAAAAATCTTCAATGCTCTTTAATAATGAAAATATAAAAGTTCGCTAGTCTGAGGGAAGAGTTGGCTCTCACTGATCTTTTATGGAATGCGAGGGGCTTCAAGTCTCTAGCCAGAATAATTAATGCTAAGGATACTTCTGATTTTGTCATTCTCACCAAAATTAGACAAAGCTTAATAGGTTGCAAAGGCTGGAGTTCTAGAGGTGTTGAATGGACTTCTTAAGATGATGTAGGTTCCTTTTGGTAGTATAGTCTTTTTTTCTCCCCTCTCTCTCTTCTTTGGAAGGACTTGCTCTAATAGATGAAAGGTGTGCTCTTCCTCTATTTCGGTGGTTATCTTAAGGCTAATGATGTTTGTTGGTGGATTTTAGGCATATGTCTTAGGCCCAGCTAACACGATGAGACAAGTTTTGAAGGGAATTATGTGACTTTCAAGTTATATCACTCAATGAAAGTTGTTTTCTTTTACAACAAAACTATTTTCTTTTAGCACTTCATTGAGTTGATTAAAGAATGATCACGGGTGAATAGCTCTGACTGTATTTTTACTGCACGGGTCAACAAGTCTTCCCTTTCTTTTATTCCCAATACAAAAGGAATATATTCAGGAAGAATAGTTTTGATTATTGTTTAAAAATATGAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCGCTGAATAATTTGCAAGCTACACATAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTCTTATCACGTGTTTTTATCTTTTTGTATCTTCTATAAACTCAGAAAATGTCATCTTGACATGCTTGTTGATTCTCCAGGTTTGCGATCAACCGCATCCGCTGCATGTGAAGAATGTGGTACGCAATGTGCTTGAAGGTAAATTTGATGATGCTTGTACAGGCTTGAGGCAACTCTACGACTTAGGCTATTCTCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGTATTTTAAAACCCGAGGCATCATTTGATCATACCAGGTTAACCAAGTACTCACTCTTTTTGATGAATTGCAGGAAACTGGGTTTGCTCATATGAGAATCTGTGATGGAGTCGGTTCTTACCTTCAACTATGTGGTCTTTTGGCCAAGCTTTCCATGGTTCGTGAGACTGCAAAAGCACCATGA

mRNA sequence

ATGGCGTCTTCTTCAGGCAGCAGTAGCAACTACGACATTCCGTGGGTGGAGAAGTACAGGCCCAACAAGGTCACTGACATTGTGGGCAATGAAGATGCAGTTTCTCGTCTCCAAGTCATTGCTCGGGACGGCAACATGCCCAATCTCATATTATCTGGTCCGCCAGGAACTGGGAAGACAACCAGTATTTTGGCTCTTGCTCATGAGCTCTTGGGACTGAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACATTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATTTATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTTCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTGATTCAGGCTGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCGCTGAATAATTTGCAAGCTACACATAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGCGATCAACCGCATCCGCTGCATGTGAAGAATGTGGTACGCAATGTGCTTGAAGGTAAATTTGATGATGCTTGTACAGGCTTGAGGCAACTCTACGACTTAGGCTATTCTCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGAATCTGTGATGGAGTCGGTTCTTACCTTCAACTATGTGGTCTTTTGGCCAAGCTTTCCATGGTTCGTGAGACTGCAAAAGCACCATGA

Coding sequence (CDS)

ATGGCGTCTTCTTCAGGCAGCAGTAGCAACTACGACATTCCGTGGGTGGAGAAGTACAGGCCCAACAAGGTCACTGACATTGTGGGCAATGAAGATGCAGTTTCTCGTCTCCAAGTCATTGCTCGGGACGGCAACATGCCCAATCTCATATTATCTGGTCCGCCAGGAACTGGGAAGACAACCAGTATTTTGGCTCTTGCTCATGAGCTCTTGGGACTGAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACATTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATTTATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTTCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTGATTCAGGCTGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCGCTGAATAATTTGCAAGCTACACATAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGCGATCAACCGCATCCGCTGCATGTGAAGAATGTGGTACGCAATGTGCTTGAAGGTAAATTTGATGATGCTTGTACAGGCTTGAGGCAACTCTACGACTTAGGCTATTCTCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGAATCTGTGATGGAGTCGGTTCTTACCTTCAACTATGTGGTCTTTTGGCCAAGCTTTCCATGGTTCGTGAGACTGCAAAAGCACCATGA

Protein sequence

MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGLNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP*

Homology

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BLAST of Chy6G124990 vs. ExPASy Swiss-Prot
Match: Q9CAM7 (Replication factor C subunit 2 OS=Arabidopsis thaliana OX=3702 GN=RFC2 PE=1 SV=1)

HSP 1 Score: 607.1 bits (1564), Expect = 1.2e-172
Identity = 302/333 (90.69%), Postives = 319/333 (95.80%), Query Frame = 0


Query: 1   MASSSGSSS--NYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60
           MASSS +S+   Y+ PWVEKYRP+KV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG
Sbjct: 1   MASSSSTSTGDGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60

Query: 61  KTTSILALAHELLGLNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120
           KTTSILALAHELLG NYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
Sbjct: 61  KTTSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180
           EADSMT+GAQQALRRT+EIYSN+TRFALACNTS+KIIEPIQSRCA+VRFSRL+DQ+ILGR
Sbjct: 121 EADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGR 180

Query: 181 LMVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPL 240
           L+VV+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGF FVNQ+NVFKVCDQPHPL
Sbjct: 181 LLVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300
           HVKN+VRNVLE KFD AC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG
Sbjct: 241 HVKNIVRNVLESKFDIACDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300

Query: 301 FAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP 332
           FAHMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 301 FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333

[Close]

BLAST of Chy6G124990 vs. ExPASy Swiss-Prot
Match: Q7XRX1 (Replication factor C subunit 4 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC4 PE=2 SV=2)

HSP 1 Score: 580.9 bits (1496), Expect = 9.4e-165
Identity = 286/332 (86.14%), Postives = 312/332 (93.98%), Query Frame = 0


Query: 2   ASSSGS---SSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 61
           ASSS +   +  YDIPWVEKYRP +V D+ GN DAV+RLQ IARDGNMPNLILSGPPGTG
Sbjct: 3   ASSSSAPDLADAYDIPWVEKYRPTRVADVGGNSDAVARLQDIARDGNMPNLILSGPPGTG 62

Query: 62  KTTSILALAHELLGLNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 121
           KTTSIL+LAHELLG +Y+E VLELNASDDRG+DVVRNKIKMFAQKKVTL PGRHK+VILD
Sbjct: 63  KTTSILSLAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILD 122

Query: 122 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 181
           EADSMT+GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL+DQEILGR
Sbjct: 123 EADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGR 182

Query: 182 LMVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPL 241
           LM+V+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGFRFVNQ+NVFKVCDQPHPL
Sbjct: 183 LMIVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPL 242

Query: 242 HVKNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 301
           HVKN+V+NVL+GKFD+AC+ L+QLYDLGYSPTDIITTLFR+IKNYDMAEYLKLE +KETG
Sbjct: 243 HVKNMVKNVLDGKFDEACSALKQLYDLGYSPTDIITTLFRVIKNYDMAEYLKLELLKETG 302

Query: 302 FAHMRICDGVGSYLQLCGLLAKLSMVRETAKA 331
           FAHMRICDGVGS+LQL GLLAK ++VRETAKA
Sbjct: 303 FAHMRICDGVGSFLQLSGLLAKFALVRETAKA 334

[Close]

BLAST of Chy6G124990 vs. ExPASy Swiss-Prot
Match: Q05B83 (Replication factor C subunit 2 OS=Bos taurus OX=9913 GN=RFC2 PE=2 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 2.9e-126
Identity = 217/320 (67.81%), Postives = 266/320 (83.12%), Query Frame = 0


Query: 2   ASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 61
           + + GS+ +Y++PWVEKYRP K+ +IVGNED VSRL+V AR+GN+PN+I++GPPGTGKTT
Sbjct: 23  SKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 82

Query: 62  SILALAHELLGLNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 121
           SIL LA  LLG   K+ VLELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEAD
Sbjct: 83  SILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEAD 142

Query: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 181
           SMT GAQQALRRTMEIYS TTRFALACN S KIIEPIQSRCA++R+++LTD +IL RL+ 
Sbjct: 143 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLS 202

Query: 182 VIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVK 241
           VI+ EKV Y  +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N +NVFKVCD+PHPL VK
Sbjct: 203 VIEKEKVQYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVK 262

Query: 242 NVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 301
            ++++ +    D+A   L  L+ LGYSP DII  +FR+ K + MAEYLKLEF+KE G+ H
Sbjct: 263 EMIQHCVSADIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTH 322

Query: 302 MRICDGVGSYLQLCGLLAKL 322
           M+I +GV S LQ+ GLLA+L
Sbjct: 323 MKIAEGVNSLLQMAGLLARL 342

[Close]

BLAST of Chy6G124990 vs. ExPASy Swiss-Prot
Match: P35250 (Replication factor C subunit 2 OS=Homo sapiens OX=9606 GN=RFC2 PE=1 SV=3)

HSP 1 Score: 452.6 bits (1163), Expect = 3.9e-126
Identity = 217/320 (67.81%), Postives = 266/320 (83.12%), Query Frame = 0


Query: 2   ASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 61
           + + GS+ +Y++PWVEKYRP K+ +IVGNED VSRL+V AR+GN+PN+I++GPPGTGKTT
Sbjct: 25  SKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 84

Query: 62  SILALAHELLGLNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 121
           SIL LA  LLG   K+ +LELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEAD
Sbjct: 85  SILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEAD 144

Query: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 181
           SMT GAQQALRRTMEIYS TTRFALACN S KIIEPIQSRCA++R+++LTD +IL RLM 
Sbjct: 145 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMN 204

Query: 182 VIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVK 241
           VI+ E+VPY  +GLEAIIFTA GDMRQALNNLQ+T SGF F+N +NVFKVCD+PHPL VK
Sbjct: 205 VIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVK 264

Query: 242 NVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 301
            ++++ +    D+A   L  L+ LGYSP DII  +FR+ K + MAEYLKLEF+KE G+ H
Sbjct: 265 EMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTH 324

Query: 302 MRICDGVGSYLQLCGLLAKL 322
           M+I +GV S LQ+ GLLA+L
Sbjct: 325 MKIAEGVNSLLQMAGLLARL 344

[Close]

BLAST of Chy6G124990 vs. ExPASy Swiss-Prot
Match: Q641W4 (Replication factor C subunit 2 OS=Rattus norvegicus OX=10116 GN=Rfc2 PE=2 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 1.1e-125
Identity = 214/317 (67.51%), Postives = 265/317 (83.60%), Query Frame = 0


Query: 5   SGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSIL 64
           S ++ +Y++PWVEKYRP K+ +IVGNED VSRL+V AR+GN+PN+I++GPPGTGKTTSIL
Sbjct: 23  SKTTGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSIL 82

Query: 65  ALAHELLGLNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMT 124
            LA  LLG   K+ VLELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEADSMT
Sbjct: 83  CLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMT 142

Query: 125 TGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQ 184
            GAQQALRRTMEIYS TTRFALACN S KIIEPIQSRCA++R+++LTD ++L RLM VI+
Sbjct: 143 DGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIE 202

Query: 185 AEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKNVV 244
            EKVPY  +GLEAIIFTA GDMRQALNNLQ+T SGF ++N +NVFKVCD+PHPL VK ++
Sbjct: 203 KEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMI 262

Query: 245 RNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRI 304
           ++ ++   D+A   L  L+ LGYSP D+I  +FR+ K + MAEYLKLEF+KE G+ HM++
Sbjct: 263 QHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKV 322

Query: 305 CDGVGSYLQLCGLLAKL 322
            +GV S LQ+ GLLA+L
Sbjct: 323 AEGVNSLLQMAGLLARL 339

[Close]

BLAST of Chy6G124990 vs. ExPASy TrEMBL
Match: A0A0A0L763 (AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G038730 PE=3 SV=1)

HSP 1 Score: 660.6 bits (1703), Expect = 3.4e-186
Identity = 330/331 (99.70%), Postives = 330/331 (99.70%), Query Frame = 0


Query: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGLNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLG NYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240
           VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 332
           HMRICDGVGSYLQLCGLLAKLSMVRETAKAP
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of Chy6G124990 vs. ExPASy TrEMBL
Match: A0A1S3BLV0 (replication factor C subunit 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490969 PE=3 SV=1)

HSP 1 Score: 655.2 bits (1689), Expect = 1.4e-184
Identity = 327/331 (98.79%), Postives = 329/331 (99.40%), Query Frame = 0


Query: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGLNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLG NYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240
           VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KNVVRNVLEGKFDDAC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 332
           HMRICDGVGSYLQLCGLLAKLSMVRETAKAP
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of Chy6G124990 vs. ExPASy TrEMBL
Match: A0A6J1DH57 (replication factor C subunit 2 OS=Momordica charantia OX=3673 GN=LOC111020446 PE=3 SV=1)

HSP 1 Score: 641.3 bits (1653), Expect = 2.2e-180
Identity = 318/330 (96.36%), Postives = 326/330 (98.79%), Query Frame = 0


Query: 2   ASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 61
           +SSSG+SS+YD+PWVEK+RP KV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT
Sbjct: 3   SSSSGNSSSYDMPWVEKFRPTKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 62

Query: 62  SILALAHELLGLNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 121
           SILALAHELLG NYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD
Sbjct: 63  SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 122

Query: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 181
           SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV
Sbjct: 123 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 182

Query: 182 VIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVK 241
           V+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHVK
Sbjct: 183 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVK 242

Query: 242 NVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 301
           NVVRNVLEGKFDDAC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH
Sbjct: 243 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 302

Query: 302 MRICDGVGSYLQLCGLLAKLSMVRETAKAP 332
           MRICDGVGSYLQLCGLLAKLSMVRETAKAP
Sbjct: 303 MRICDGVGSYLQLCGLLAKLSMVRETAKAP 332

[Close]

BLAST of Chy6G124990 vs. ExPASy TrEMBL
Match: A0A5D3D7L4 (Replication factor C subunit 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00910 PE=3 SV=1)

HSP 1 Score: 641.0 bits (1652), Expect = 2.8e-180
Identity = 320/324 (98.77%), Postives = 322/324 (99.38%), Query Frame = 0


Query: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGLNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLG NYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240
           VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KNVVRNVLEGKFDDAC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSMV 325
           HMRICDGVGSYLQLCGLLAKLSMV
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSMV 324

[Close]

BLAST of Chy6G124990 vs. ExPASy TrEMBL
Match: A0A803R8Y5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 629.8 bits (1623), Expect = 6.5e-177
Identity = 311/331 (93.96%), Postives = 325/331 (98.19%), Query Frame = 0


Query: 1   MASSSGSS-SNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGK 60
           MASSS SS SNYDIPWVEKYRPNKV DIVGNEDAVSRLQVIARDGNMPN+ILSGPPGTGK
Sbjct: 1   MASSSSSSLSNYDIPWVEKYRPNKVVDIVGNEDAVSRLQVIARDGNMPNIILSGPPGTGK 60

Query: 61  TTSILALAHELLGLNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120
           TTSILALAHELLG NY+EGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE
Sbjct: 61  TTSILALAHELLGPNYREGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120

Query: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180
           ADSMT+GAQQALRRTMEIYSN+TRFALACNTSSKIIEPIQSRCA+VRFSRL+DQ+ILGRL
Sbjct: 121 ADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQQILGRL 180

Query: 181 MVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLH 240
           MVV++AEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQ+NVFKVCDQPHPLH
Sbjct: 181 MVVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQENVFKVCDQPHPLH 240

Query: 241 VKNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300
           VKN+VRNVLEGKFDDAC GL+QLYDLGYSPTDIITT+FRIIKNYDMAEYLKLEFMKETGF
Sbjct: 241 VKNIVRNVLEGKFDDACFGLKQLYDLGYSPTDIITTIFRIIKNYDMAEYLKLEFMKETGF 300

Query: 301 AHMRICDGVGSYLQLCGLLAKLSMVRETAKA 331
           AHMRICDGVGSYLQLCGLLAKLSM RETA+A
Sbjct: 301 AHMRICDGVGSYLQLCGLLAKLSMARETARA 331

[Close]

BLAST of Chy6G124990 vs. NCBI nr
Match: XP_004147970.1 (replication factor C subunit 2 [Cucumis sativus] >KGN55951.1 hypothetical protein Csa_010919 [Cucumis sativus])

HSP 1 Score: 655 bits (1689), Expect = 5.67e-237
Identity = 330/331 (99.70%), Postives = 330/331 (99.70%), Query Frame = 0


Query: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGLNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLG NYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240
           VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331
           HMRICDGVGSYLQLCGLLAKLSMVRETAKAP
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of Chy6G124990 vs. NCBI nr
Match: XP_008448956.1 (PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis melo])

HSP 1 Score: 649 bits (1675), Expect = 7.72e-235
Identity = 327/331 (98.79%), Postives = 329/331 (99.40%), Query Frame = 0


Query: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGLNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLG NYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240
           VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KNVVRNVLEGKFDDAC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331
           HMRICDGVGSYLQLCGLLAKLSMVRETAKAP
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of Chy6G124990 vs. NCBI nr
Match: XP_038905731.1 (replication factor C subunit 2 [Benincasa hispida])

HSP 1 Score: 638 bits (1646), Expect = 2.03e-230
Identity = 320/331 (96.68%), Postives = 327/331 (98.79%), Query Frame = 0


Query: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSS+YD+PWVEKYRP+ V DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSSYDMPWVEKYRPSTVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGLNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLG NYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHK+VILDEA
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKMVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240
           VV+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KNVVRNVLEGKFDDAC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331
           HMRICDGVGSYLQLCGLLAKLSMVRETAKAP
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of Chy6G124990 vs. NCBI nr
Match: XP_022152824.1 (replication factor C subunit 2 [Momordica charantia])

HSP 1 Score: 635 bits (1638), Expect = 3.50e-229
Identity = 318/330 (96.36%), Postives = 326/330 (98.79%), Query Frame = 0


Query: 2   ASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 61
           +SSSG+SS+YD+PWVEK+RP KV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT
Sbjct: 3   SSSSGNSSSYDMPWVEKFRPTKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 62

Query: 62  SILALAHELLGLNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 121
           SILALAHELLG NYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD
Sbjct: 63  SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 122

Query: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 181
           SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV
Sbjct: 123 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 182

Query: 182 VIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVK 241
           V+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHVK
Sbjct: 183 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVK 242

Query: 242 NVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 301
           NVVRNVLEGKFDDAC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH
Sbjct: 243 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 302

Query: 302 MRICDGVGSYLQLCGLLAKLSMVRETAKAP 331
           MRICDGVGSYLQLCGLLAKLSMVRETAKAP
Sbjct: 303 MRICDGVGSYLQLCGLLAKLSMVRETAKAP 332

[Close]

BLAST of Chy6G124990 vs. NCBI nr
Match: TYK19440.1 (replication factor C subunit 2 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 635 bits (1637), Expect = 1.83e-228
Identity = 320/324 (98.77%), Postives = 322/324 (99.38%), Query Frame = 0


Query: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGLNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLG NYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240
           VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KNVVRNVLEGKFDDAC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSMV 324
           HMRICDGVGSYLQLCGLLAKLSMV
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSMV 324

[Close]

BLAST of Chy6G124990 vs. TAIR 10
Match: AT1G63160.1 (replication factor C 2 )

HSP 1 Score: 607.1 bits (1564), Expect = 8.7e-174
Identity = 302/333 (90.69%), Postives = 319/333 (95.80%), Query Frame = 0


Query: 1   MASSSGSSS--NYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60
           MASSS +S+   Y+ PWVEKYRP+KV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG
Sbjct: 1   MASSSSTSTGDGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60

Query: 61  KTTSILALAHELLGLNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120
           KTTSILALAHELLG NYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
Sbjct: 61  KTTSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180
           EADSMT+GAQQALRRT+EIYSN+TRFALACNTS+KIIEPIQSRCA+VRFSRL+DQ+ILGR
Sbjct: 121 EADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGR 180

Query: 181 LMVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPL 240
           L+VV+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGF FVNQ+NVFKVCDQPHPL
Sbjct: 181 LLVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300
           HVKN+VRNVLE KFD AC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG
Sbjct: 241 HVKNIVRNVLESKFDIACDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300

Query: 301 FAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP 332
           FAHMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 301 FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333

[Close]

BLAST of Chy6G124990 vs. TAIR 10
Match: AT1G77470.1 (replication factor C subunit 3 )

HSP 1 Score: 207.2 bits (526), Expect = 2.0e-53
Identity = 117/322 (36.34%), Postives = 184/322 (57.14%), Query Frame = 0


Query: 14  PWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGL 73
           PWVEKYRP  + D+  + D +  +  +  +  +P+L+L GPPGTGKT++ILA+A +L G 
Sbjct: 40  PWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGP 99

Query: 74  NYKEGVLELNASDDRGIDVVRNKIKMFAQ-KKVTLPPGRHKVVILDEADSMTTGAQQALR 133
            Y+  +LELNASDDRGIDVVR +I+ FA  +  +L     K+V+LDEAD+MT  AQ ALR
Sbjct: 100 KYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALR 159

Query: 134 RTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQAEKVPYVP 193
           R +E Y+ +TRFAL  N  +KII  +QSRC   RF+ L    +  RL  VI+AE++    
Sbjct: 160 RVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSD 219

Query: 194 EGLEAIIFTADGDMRQALNNLQATHSG--------FRFVNQDNVFKVCDQPHPLHVKNVV 253
            GL A++  ++GDMR+ALN LQ+TH           + + +++V+     P P  ++ + 
Sbjct: 220 CGLAALVRLSNGDMRKALNILQSTHMASKEITEEESKQITEEDVYLCTGNPLPKDIEQIS 279

Query: 254 RNVLEGKFDDACTGLRQLYD-LGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMR 313
             +L   FD+    + ++    G +  DI+  +   I    M   ++++ + +      R
Sbjct: 280 HWLLNKPFDECYKDVSEIKTRKGLAIVDIVKEITLFIFKIKMPSAVRVQLINDLADIEYR 339

Query: 314 ICDGVGSYLQLCGLLAKLSMVR 326
           +  G    LQL  +++  +  R
Sbjct: 340 LSFGCNDKLQLGAIISTFTHAR 361

[Close]

BLAST of Chy6G124990 vs. TAIR 10
Match: AT1G21690.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 206.1 bits (523), Expect = 4.5e-53
Identity = 126/312 (40.38%), Postives = 169/312 (54.17%), Query Frame = 0


Query: 14  PWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGL 73
           PWVEKYRP +V D+   E+ V  L    +  + P+++  GPPGTGKTT+ LA+AH+L G 
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 74  N-YKEGVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTT 133
             YK  VLELNASDDRGI+VVR KIK FA        ++   P    K++ILDEADSMT 
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129

Query: 134 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQA 193
            AQ ALRRTME YS  TRF   CN  S+IIEP+ SRCA  RF  L+++ +  R++ +   
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189

Query: 194 EKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKNVVR 253
           E +    E L  +   + GD+R+A+  LQ+    F                PL V N + 
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLF 249

Query: 254 NVLE-GKFDDACTGLRQLYDLGYSPTDIITTLFRII--KNYDMAEYLKLEFMKETGFAHM 313
              + G FD A   +  +   GY  + II  LF I+   + D+ +  K +  K       
Sbjct: 250 TACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDK 309

Query: 314 RICDGVGSYLQL 315
           R+ DG   YLQL
Sbjct: 310 RLVDGADEYLQL 321

[Close]

BLAST of Chy6G124990 vs. TAIR 10
Match: AT1G21690.4 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 201.4 bits (511), Expect = 1.1e-51
Identity = 124/311 (39.87%), Postives = 167/311 (53.70%), Query Frame = 0


Query: 14  PWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGL 73
           PWVEKYRP +V D+   E+ V  L    +  + P+++  GPPGTGKTT+ LA+AH+L   
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLF-- 69

Query: 74  NYKEGVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTTG 133
               GVLELNASDDRGI+VVR KIK FA        ++   P    K++ILDEADSMT  
Sbjct: 70  ----GVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTED 129

Query: 134 AQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQAE 193
           AQ ALRRTME YS  TRF   CN  S+IIEP+ SRCA  RF  L+++ +  R++ +   E
Sbjct: 130 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEE 189

Query: 194 KVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 253
            +    E L  +   + GD+R+A+  LQ+    F                PL V N +  
Sbjct: 190 GLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFT 249

Query: 254 VLE-GKFDDACTGLRQLYDLGYSPTDIITTLFRII--KNYDMAEYLKLEFMKETGFAHMR 313
             + G FD A   +  +   GY  + II  LF I+   + D+ +  K +  K       R
Sbjct: 250 ACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDKR 309

Query: 314 ICDGVGSYLQL 315
           + DG   YLQL
Sbjct: 310 LVDGADEYLQL 314

[Close]

BLAST of Chy6G124990 vs. TAIR 10
Match: AT1G21690.2 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 197.2 bits (500), Expect = 2.1e-50
Identity = 124/312 (39.74%), Postives = 165/312 (52.88%), Query Frame = 0


Query: 14  PWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGL 73
           PWVEKYRP +V D+   E+              P+++  GPPGTGKTT+ LA+AH+L G 
Sbjct: 10  PWVEKYRPKQVKDVAHQEEV------------CPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 74  N-YKEGVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTT 133
             YK  VLELNASDDRGI+VVR KIK FA        ++   P    K++ILDEADSMT 
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129

Query: 134 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQA 193
            AQ ALRRTME YS  TRF   CN  S+IIEP+ SRCA  RF  L+++ +  R++ +   
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189

Query: 194 EKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKNVVR 253
           E +    E L  +   + GD+R+A+  LQ+    F                PL V N + 
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLF 249

Query: 254 NVLE-GKFDDACTGLRQLYDLGYSPTDIITTLFRII--KNYDMAEYLKLEFMKETGFAHM 313
              + G FD A   +  +   GY  + II  LF I+   + D+ +  K +  K       
Sbjct: 250 TACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDK 309

Query: 314 RICDGVGSYLQL 315
           R+ DG   YLQL
Sbjct: 310 RLVDGADEYLQL 309

The following BLAST results are available for this feature:

BLAST of Chy6G124990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAM7	1.2e-172	90.69	Replication factor C subunit 2 OS=Arabidopsis thaliana OX=3702 GN=RFC2 PE=1 SV=1	[more]
Q7XRX1	9.4e-165	86.14	Replication factor C subunit 4 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC4 ...	[more]
Q05B83	2.9e-126	67.81	Replication factor C subunit 2 OS=Bos taurus OX=9913 GN=RFC2 PE=2 SV=1	[more]
P35250	3.9e-126	67.81	Replication factor C subunit 2 OS=Homo sapiens OX=9606 GN=RFC2 PE=1 SV=3	[more]
Q641W4	1.1e-125	67.51	Replication factor C subunit 2 OS=Rattus norvegicus OX=10116 GN=Rfc2 PE=2 SV=1	[more]

BLAST of Chy6G124990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L763	3.4e-186	99.70	AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G038730 PE=3 SV...	[more]
A0A1S3BLV0	1.4e-184	98.79	replication factor C subunit 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349096...	[more]
A0A6J1DH57	2.2e-180	96.36	replication factor C subunit 2 OS=Momordica charantia OX=3673 GN=LOC111020446 PE...	[more]
A0A5D3D7L4	2.8e-180	98.77	Replication factor C subunit 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A803R8Y5	6.5e-177	93.96	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Chy6G124990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147970.1	5.67e-237	99.70	replication factor C subunit 2 [Cucumis sativus] >KGN55951.1 hypothetical protei...	[more]
XP_008448956.1	7.72e-235	98.79	PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis melo]	[more]
XP_038905731.1	2.03e-230	96.68	replication factor C subunit 2 [Benincasa hispida]	[more]
XP_022152824.1	3.50e-229	96.36	replication factor C subunit 2 [Momordica charantia]	[more]
TYK19440.1	1.83e-228	98.77	replication factor C subunit 2 isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of Chy6G124990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G63160.1	8.7e-174	90.69	replication factor C 2	[more]
AT1G77470.1	2.0e-53	36.34	replication factor C subunit 3	[more]
AT1G21690.1	4.5e-53	40.38	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.4	1.1e-51	39.87	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.2	2.1e-50	39.74	ATPase family associated with various cellular activities (AAA)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 45..177 e-value: 1.0E-12 score: 58.2
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 49..167 e-value: 9.0E-15 score: 55.3
IPR013748	Replication factor C, C-terminal	PFAM	PF08542	Rep_fac_C	coord: 235..320 e-value: 1.3E-20 score: 73.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 7..170 e-value: 7.1E-57 score: 193.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..233
None	No IPR available	GENE3D	1.10.8.60		coord: 171..234 e-value: 5.3E-21 score: 75.9
None	No IPR available	GENE3D	1.20.272.10		coord: 235..327 e-value: 6.5E-30 score: 104.9
None	No IPR available	PANTHER	PTHR11669	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	coord: 6..329
None	No IPR available	PANTHER	PTHR11669:SF5	REPLICATION FACTOR C SUBUNIT 2	coord: 6..329
None	No IPR available	CDD	cd00009	AAA	coord: 28..165 e-value: 3.13785E-25 score: 97.2167
None	No IPR available	CDD	cd18140	HLD_clamp_RFC	coord: 170..232 e-value: 8.79531E-20 score: 79.8805
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	SUPERFAMILY	48019	post-AAA+ oligomerization domain-like	coord: 234..325

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G124990.1	Chy6G124990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005663	DNA replication factor C complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003689	DNA clamp loader activity