Chy6G124790 (gene) Cucumber (hystrix) v1

Overview
NameChy6G124790
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
LocationchrH06: 23455206 .. 23455365 (-)
RNA-Seq ExpressionChy6G124790
SyntenyChy6G124790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCCTCAGGCATGGAGCGATACTTTAAAGAACACGCTACTAAGTTGGGGCTTTATAAACTCAAAAGCAGATGCATCTCTCTATATTCTTCGAACTCACCAAAATGTTGTGCTCCTCCTTGTCTATGTTGATGATGTTATCATCAATGAAAATAATACAG

mRNA sequence

GTTCCTCAGGCATGGAGCGATACTTTAAAGAACACGCTACTAAGTTGGGGCTTTATAAACTCAAAAGCAGATGCATCTCTCTATATTCTTCGAACTCACCAAAATGTTGTGCTCCTCCTTGTCTATGTTGATGATGTTATCATCAATGAAAATAATACAG

Coding sequence (CDS)

GTTCCTCAGGCATGGAGCGATACTTTAAAGAACACGCTACTAAGTTGGGGCTTTATAAACTCAAAAGCAGATGCATCTCTCTATATTCTTCGAACTCACCAAAATGTTGTGCTCCTCCTTGTCTATGTTGATGATGTTATCATCAATGAAAATAATACAG

Protein sequence

VPQAWSDTLKNTLLSWGFINSKADASLYILRTHQNVVLLLVYVDDVIINENNTX
Homology
BLAST of Chy6G124790 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-07
Identity = 24/51 (47.06%), Postives = 39/51 (76.47%), Query Frame = 0

Query: 2    PQAWSDTLKNTLLSWGFINSKADASLYILRTHQNVVLLLVYVDDVIINENN 53
            P+AW   L+N LL+ GF+NS +D SL++L+  +++V +LVYVDD++I  N+
Sbjct: 1110 PRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGND 1160

BLAST of Chy6G124790 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 6.5e-07
Identity = 23/52 (44.23%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 2    PQAWSDTLKNTLLSWGFINSKADASLYILRTHQNVVLLLVYVDDVIINENNT 54
            P+AW   L+  LL+ GF+NS +D SL++L+  ++++ +LVYVDD++I  N+T
Sbjct: 1093 PRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDT 1144

BLAST of Chy6G124790 vs. ExPASy TrEMBL
Match: A0A151QZC2 (Copia protein OS=Cajanus cajan OX=3821 GN=KK1_043251 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.4e-09
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 2   PQAWSDTLKNTLLSWGFINSKADASLYILRTHQNVVLLLVYVDDVIINENNT 54
           P+AW D+LKN LL WGF N+K+D SL+ LR   ++  LL+YVDD+I+  NNT
Sbjct: 138 PRAWFDSLKNALLKWGFQNTKSDTSLFTLRGKNHITFLLIYVDDIIVTGNNT 189

BLAST of Chy6G124790 vs. ExPASy TrEMBL
Match: A0A5D3BCV9 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold976G00020 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.4e-09
Identity = 29/52 (55.77%), Postives = 42/52 (80.77%), Query Frame = 0

Query: 2   PQAWSDTLKNTLLSWGFINSKADASLYILRTHQNVVLLLVYVDDVIINENNT 54
           P+AW++TL   L SWGF NSK+++SL+ILR   +++LLLVYVDDV++  N+T
Sbjct: 161 PRAWNETLSKKLFSWGFENSKSNSSLFILRCRSSIILLLVYVDDVVVTGNDT 212

BLAST of Chy6G124790 vs. ExPASy TrEMBL
Match: A0A6J1CS58 (uncharacterized protein LOC111013815 OS=Momordica charantia OX=3673 GN=LOC111013815 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-08
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 0

Query: 2  PQAWSDTLKNTLLSWGFINSKADASLYILRTHQNVVLLLVYVDDVIINENN 53
          P+AW+ TLK+ LLSWGF NS++D SL+I     +++LLLVYVDDVI+  NN
Sbjct: 30 PRAWNVTLKSALLSWGFTNSRSDTSLFIYHQGPSIILLLVYVDDVIVTGNN 80

BLAST of Chy6G124790 vs. ExPASy TrEMBL
Match: A0A803PR46 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-08
Identity = 28/51 (54.90%), Postives = 41/51 (80.39%), Query Frame = 0

Query: 2   PQAWSDTLKNTLLSWGFINSKADASLYILRTHQNVVLLLVYVDDVIINENN 53
           P+AW D LK TLL W F+NS+AD SL++L+T + V+++L+YVDD+II  N+
Sbjct: 157 PRAWYDKLKQTLLEWNFVNSRADTSLFLLKTPKFVIMVLIYVDDIIITGNS 207

BLAST of Chy6G124790 vs. ExPASy TrEMBL
Match: A0A2K3P9B0 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Trifolium pratense OX=57577 GN=L195_g008495 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.7e-08
Identity = 27/52 (51.92%), Postives = 42/52 (80.77%), Query Frame = 0

Query: 2  PQAWSDTLKNTLLSWGFINSKADASLYILRTHQNVVLLLVYVDDVIINENNT 54
          P+AW D+LKN LLSWGF N+K+D+SL+IL+   ++  LL++VDD+++  +NT
Sbjct: 30 PRAWFDSLKNALLSWGFQNTKSDSSLFILKEKDHITFLLIHVDDILVTGSNT 81

BLAST of Chy6G124790 vs. NCBI nr
Match: GAU17915.1 (hypothetical protein TSUD_330400, partial [Trifolium subterraneum])

HSP 1 Score: 70.5 bits (171), Expect = 2.34e-12
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 0

Query: 2   PQAWSDTLKNTLLSWGFINSKADASLYILRTHQNVVLLLVYVDDVIINENNT 53
           P+AW D+LKN LLSWGF N+K+D+SL+ LR   ++  LL+YVDD+I+  NNT
Sbjct: 885 PRAWFDSLKNALLSWGFQNTKSDSSLFTLRGRDHITFLLIYVDDIIVTGNNT 936

BLAST of Chy6G124790 vs. NCBI nr
Match: TYJ96957.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 1.12e-11
Identity = 29/52 (55.77%), Postives = 42/52 (80.77%), Query Frame = 0

Query: 2   PQAWSDTLKNTLLSWGFINSKADASLYILRTHQNVVLLLVYVDDVIINENNT 53
           P+AW++TL   L SWGF NSK+++SL+ILR   +++LLLVYVDDV++  N+T
Sbjct: 161 PRAWNETLSKKLFSWGFENSKSNSSLFILRCRSSIILLLVYVDDVVVTGNDT 212

BLAST of Chy6G124790 vs. NCBI nr
Match: KYP35708.1 (Copia protein [Cajanus cajan])

HSP 1 Score: 68.2 bits (165), Expect = 1.51e-11
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 2   PQAWSDTLKNTLLSWGFINSKADASLYILRTHQNVVLLLVYVDDVIINENNT 53
           P+AW D+LKN LL WGF N+K+D SL+ LR   ++  LL+YVDD+I+  NNT
Sbjct: 138 PRAWFDSLKNALLKWGFQNTKSDTSLFTLRGKNHITFLLIYVDDIIVTGNNT 189

BLAST of Chy6G124790 vs. NCBI nr
Match: XP_022144023.1 (uncharacterized protein LOC111013815 [Momordica charantia])

HSP 1 Score: 67.0 bits (162), Expect = 2.48e-11
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 0

Query: 2  PQAWSDTLKNTLLSWGFINSKADASLYILRTHQNVVLLLVYVDDVIINENN 52
          P+AW+ TLK+ LLSWGF NS++D SL+I     +++LLLVYVDDVI+  NN
Sbjct: 30 PRAWNVTLKSALLSWGFTNSRSDTSLFIYHQGPSIILLLVYVDDVIVTGNN 80

BLAST of Chy6G124790 vs. NCBI nr
Match: PNY11875.1 (hypothetical protein L195_g008495 [Trifolium pratense])

HSP 1 Score: 66.6 bits (161), Expect = 3.59e-11
Identity = 27/52 (51.92%), Postives = 42/52 (80.77%), Query Frame = 0

Query: 2  PQAWSDTLKNTLLSWGFINSKADASLYILRTHQNVVLLLVYVDDVIINENNT 53
          P+AW D+LKN LLSWGF N+K+D+SL+IL+   ++  LL++VDD+++  +NT
Sbjct: 30 PRAWFDSLKNALLSWGFQNTKSDSSLFILKEKDHITFLLIHVDDILVTGSNT 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q94HW22.9e-0747.06Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT946.5e-0744.23Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A151QZC29.4e-0955.77Copia protein OS=Cajanus cajan OX=3821 GN=KK1_043251 PE=4 SV=1[more]
A0A5D3BCV99.4e-0955.77Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A6J1CS582.1e-0858.82uncharacterized protein LOC111013815 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A803PR462.1e-0854.90Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A2K3P9B02.7e-0851.92Reverse transcriptase Ty1/copia-type domain-containing protein OS=Trifolium prat... [more]
Match NameE-valueIdentityDescription
GAU17915.12.34e-1257.69hypothetical protein TSUD_330400, partial [Trifolium subterraneum][more]
TYJ96957.11.12e-1155.77putative mitochondrial protein [Cucumis melo var. makuwa][more]
KYP35708.11.51e-1155.77Copia protein [Cajanus cajan][more]
XP_022144023.12.48e-1158.82uncharacterized protein LOC111013815 [Momordica charantia][more]
PNY11875.13.59e-1151.92hypothetical protein L195_g008495 [Trifolium pratense][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy6G124790.1Chy6G124790.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity