Chy6G124720 (gene) Cucumber (hystrix) v1

Overview
NameChy6G124720
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionSerine/threonine-protein phosphatase 7 long form-like protein
LocationchrH06: 23351337 .. 23352672 (+)
RNA-Seq ExpressionChy6G124720
SyntenyChy6G124720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAACTTTTGGTATACCATGCTTGCATTTTATGGCAGTCTGTTCACGATTTAAGATGAACTATGAAGATTTCATTGAGGACTACTACAAACTTTCAACGTATGCTTTGTGTTACTCTCCTCAGTTTCGGTCTGTACCACATGAAGATTATTGGATCACACTTGTTATACCCGTCTTACATCCTGACGGGCATAATGAGATGGATTAATATTGTTCAGAAAACCTGGTCGATCGAAGAGTTCACGATATCATAATGAGATGGATTGAAGGTAACCAAGTGCTCAAGTACAACTTGGATTTTGTGATCAACGAGGTCACAATCGAAGGAAATGTTCTTTGCTACAACGATGGGTACCGAATAATTAACAAATTGTTTACTTAATATTTTTTCTATGTGTACCAAGTGGTTCGATAAATTTATTTTGTATAATCCATTGTGTAGCGTTTTTTTGTACCTACTTTTTTACTTTCTAATTAATATTTTTGTGTAGATTATGGCTTTAAACCCATGACCAATTGATTCTAATGTTCTGTATGATTAATCTTTTCATCGATCTTCAATTGTGTGGAAGGATAGAACGGTAGGTGAGTTGGGTTGTGTACGTAGAGAGGCGGTAGTCCAACACAATATCCCACTTCACCATAACATATTGCATCTACTCTAAGCATCTGGATTTTATGGGGTGGCTAGATTGGGTTCCATCCAGTTAGATTGACATCTTATTACTGCACTCGTTGAGAAATAAAGACCAAAGACACATACATTTCATATGCCTATTGAAGAGAGCACTTTCACCTTGCAGAACATAGAAGTATTGTTAGGGATACCAATCGATGGGGAACCTGTTATCAGTCAAGTGCATGAAGACTGGATAAATTTATGTCAGATGTTATTTGGTGTGGTCCCACCTGCTAATAAAATAAAGGGATAAAGGTGAACTCTCACGTGGTTAGCGATATAATTTCCAGGACTTGATGGTGATGCAGAAGAGGAAATCGTCATCAGATATGCAAGAGCATACATTTTACAATTAATGGGTAGAAGTCTATTTTCTGATAAATCAGGTAGTTTTGTGCATCTGATGTTCTTGCCATTATGGGGTGGTTTACATGAGGTGGGTCGATACTCATGGGGTAGAGCGTGCTTGACATGGTTATATAGACAACTATGCAAAGAATCAAAGCGAGATGTTCCTGACATTGCTGGTTGTTGATACTTCTTCAAATATGGGCTTGGGAACGATTTCCCACAATATCTCCACAACTTAGACATGCAAACATTCATCTAATACCTAGACGAGCACACGGTACACGATATAGTATTTTATTTTAA

mRNA sequence

ATGAAAAACTTTTGGTATACCATGCTTGCATTTTATGGCAGTCTGTTCACGATTTAAGATGAACTATGAAGATTTCATTGAGGACTACTACAAACTTTCAACGTATGCTTTGTGTTACTCTCCTCAGTTTCGGTCTGTACCACATGAAGATTATTGGATCACACTTGTTATACCCGTCTTACATCCTGACGGGCATAATGAGATGGATTAATATTGTTCAGAAAACCTGGTCGATCGAAGAGTTCACGATATCATAATGAGATGGATTGAAGATTATGGCTTTAAACCCATGACCAATTGATTCTAATGTTCTGTATGATTAATCTTTTCATCGATCTTCAATTGTGTGGAAGGATAGAACGGTAGGTGAGTTGGGTTGTGTACGTAGAGAGGCGGTAGTCCAACACAATATCCCACTTCACCATAACATATTGCATCTACTCTAAGCATCTGGATTTTATGGGAAATAAAGACCAAAGACACATACATTTCATATGCCTATTGAAGAGAGCACTTTCACCTTGCAGAACATAGAAGTATTGTTAGGGATACCAATCGATGGGGAACCTGTTATCAGTCAAGTGCATGAAGACTGGATAAATTTATGTCAGATGTTATTTGGTGTGGTCCCACCTGCTAATAAAATAAAGGGATAAAGGTGAACTCTCACGTGGTTAGCGATATAATTTCCAGGACTTGATGGTGATGCAGAAGAGGAAATCGTCATCAGATATGCAAGAGCATACATTTTACAATTAATGGGTAGAAGTCTATTTTCTGATAAATCAGGTAGTTTTGTGCATCTGATGTTCTTGCCATTATGGGGTGGTTTACATGAGGTGGGTCGATACTCATGGGGTAGAGCGTGCTTGACATGGTTATATAGACAACTATGCAAAGAATCAAAGCGAGATGTTCCTGACATTGCTGGTTGTTGATACTTCTTCAAATATGGGCTTGGGAACGATTTCCCACAATATCTCCACAACTTAGACATGCAAACATTCATCTAATACCTAGACGAGCACACGGTACACGATATAGTATTTTATTTTAA

Coding sequence (CDS)

ATGAAAAACTTTTGGTATACCATGCTTGCATTTTATGGCAGTCTGTTCACGATTTAAGATGAACTATGAAGATTTCATTGAGGACTACTACAAACTTTCAACGTATGCTTTGTGTTACTCTCCTCAGTTTCGGTCTGTACCACATGAAGATTATTGGATCACACTTGTTATACCCGTCTTACATCCTGACGGGCATAATGAGATGGATTAATATTGTTCAGAAAACCTGGTCGATCGAAGAGTTCACGATATCATAATGAGATGGATTGAAGATTATGGCTTTAAACCCATGACCAATTGATTCTAATGTTCTGTATGATTAATCTTTTCATCGATCTTCAATTGTGTGGAAGGATAGAACGGTAGGTGAGTTGGGTTGTGTACGTAGAGAGGCGGTAGTCCAACACAATATCCCACTTCACCATAACATATTGCATCTACTCTAAGCATCTGGATTTTATGGGAAATAAAGACCAAAGACACATACATTTCATATGCCTATTGAAGAGAGCACTTTCACCTTGCAGAACATAGAAGTATTGTTAGGGATACCAATCGATGGGGAACCTGTTATCAGTCAAGTGCATGAAGACTGGATAAATTTATGTCAGATGTTATTTGGTGTGGTCCCACCTGCTAATAAAATAAAGGGATAAAGGTGAACTCTCACGTGGTTAGCGATATAATTTCCAGGACTTGATGGTGATGCAGAAGAGGAAATCGTCATCAGATATGCAAGAGCATACATTTTACAATTAATGGGTAGAAGTCTATTTTCTGATAAATCAGGTAGTTTTGTGCATCTGATGTTCTTGCCATTATGGGGTGGTTTACATGAGGTGGGTCGATACTCATGGGGTAGAGCGTGCTTGACATGGTTATATAGACAACTATGCAAAGAATCAAAGCGAGATGTTCCTGACATTGCTGGTTGTTGATACTTCTTCAAATATGGGCTTGGGAACGATTTCCCACAATATCTCCACAACTTAGACATGCAAACATTCATCTAATACCTAGACGAGCACACGGTACACGATATAGTATTTTATTTTAA

Protein sequence

MKNFWYTMLAFYGSLFTI*DEL*RFH*GLLQTFNVCFVLLSSVSVCTT*RLLDHTCYTRLTS*RA**DGLILFRKPGRSKSSRYHNEMD*RLWL*THDQLILMFCMINLFIDLQLCGRIER*VSWVVYVERR*SNTISHFTITYCIYSKHLDFMGNKDQRHIHFICLLKRALSPCRT*KYC*GYQSMGNLLSVKCMKTG*IYVRCYLVWSHLLIK*RDKGELSRG*RYNFQDLMVMQKRKSSSDMQEHTFYN*WVEVYFLINQVVLCI*CSCHYGVVYMRWVDTHGVERA*HGYIDNYAKNQSEMFLTLLVVDTSSNMGLGTISHNISTT*TCKHSSNT*TSTRYTI*YFILX
Homology
[Close]
BLAST of Chy6G124720 vs. ExPASy TrEMBL
Match: A0A5A7V6Z6 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00940 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-06
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 273 HYGVVYMRWVDTHGVERA*HGYIDNYAKNQSEMFLTLLV 312
           HY V+YMR VDT GVERA HG IDNYAK++SEMF+TLLV
Sbjct: 100 HYWVIYMRRVDTCGVERAWHGCIDNYAKHRSEMFVTLLV 138

[Close]
BLAST of Chy6G124720 vs. ExPASy TrEMBL
Match: A0A5A7SVE8 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00030 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-05
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 276 VVYMRWVDTHGVERA*HGYIDNYAKNQSEMFLTLLV 312
           V+YMR VDT GVERA HG IDNYAK++SEMF+TLL+
Sbjct: 244 VIYMRRVDTRGVERAWHGCIDNYAKHRSEMFVTLLI 279

[Close]
BLAST of Chy6G124720 vs. NCBI nr
Match: KAA0062994.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 4.31e-08
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 273 HYGVVYMRWVDTHGVERA*HGYIDNYAKNQSEMFLTLLV 311
           HY V+YMR VDT GVERA HG IDNYAK++SEMF+TLLV
Sbjct: 100 HYWVIYMRRVDTCGVERAWHGCIDNYAKHRSEMFVTLLV 138

[Close]
BLAST of Chy6G124720 vs. NCBI nr
Match: KAA0034940.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK21295.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 9.53e-06
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 276 VVYMRWVDTHGVERA*HGYIDNYAKNQSEMFLTLLV 311
           V+YMR VDT GVERA HG IDNYAK++SEMF+TLL+
Sbjct: 244 VIYMRRVDTRGVERAWHGCIDNYAKHRSEMFVTLLI 279

The following BLAST results are available for this feature:
BLAST of Chy6G124720 vs.
Match NameE-valueIdentityDescription
BLAST of Chy6G124720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V6Z61.5e-0676.92Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7SVE82.9e-0575.00Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
BLAST of Chy6G124720 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062994.14.31e-0876.92serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0034940.19.53e-0675.00serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
BLAST of Chy6G124720 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy6G124720.1Chy6G124720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance