Chy6G124250 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G124250
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	DNA-directed RNA polymerases I and III subunit RPAC1
Location	chrH06: 22819584 .. 22829751 (-)
RNA-Seq Expression	Chy6G124250
Synteny	Chy6G124250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGGCAAAGATAAGAATTTGCATAATATGTCCGAGTCGGAATCCGAGCAAGAAGGCGTTGACAAAGAAGGCATTGAGTGGATAATGAATCTTCCAGACGTGCCCATGAAGCTCCCACCACATGTCGAATTGCAGAGAACTCGAGTCGAATGCAAAGCCGATGCTCCCATTCATGTACTCTTCGTTTCCATTTCCCATAATTTGGTTATTCAAATTCTAAGAATGGGAAATATCCTTTTTAGCATGTTTACTGTAGTTGTATGTTTAACGTGATTTTATTAAATTACGTTTCATGCTTCTGGAGAGAAGTGAATTTAATGGAACCTGTTTACTTTACTTGATTTTTATTCATAGTACGTGTACATACTATTTCTCATGTTGTAATTAGCTTACTTTAGTTTTCTTCTCATGGTCTTTGTGGAAAACGTGGACTTCTGTAGACAGATACCATACAGTATTCTGGAGCATTTGCTTCCATGGGCTATGACAATAGTTTACGTCTGGATAATTTTCGCAACAACTTTAAAATTGAAGTTATTGATCTGAAAGAGGATGACATTGAGTTTGACATGATCGGCATTGATCCAGCACTTGCTAATGCATTTCGAAGAATCCTGATAGCCGAGGTAGGTAACCAAGCAGAATGAATTGAAACTATAATAATTGATTATTTTAGTGAGACTTTACTGAGTTTTTGGTGTTTACTTCCTTGCCACTACTTCTGGTGTTGTTATGTGTGTCCAATATATATAAACGCTCGAGATTTAGCCCAAGCTGCAAGCTCTTAGCTTTCTTTCCTTCACATAGAGCTTGTGCTTTGTAGGGAAAAGATGTATGCTTTTGATGACAATTTATGAATGTTTGTAGTCTTTATGGTTTATGAATGGTTATAAATTACGATGGTTCTTTTCTATTGTTCAAAAATTGCAAGTTTCTTCATGTATTAAAAGCTAATAAAATGGGGATATTGATGGTGATGGCTTTGGATGTTTTAGAGTTTTTCTTGTCAGACATGGCCCAGGGTGCAAGCCCATACTTTGGTTAAAAAGAAAAAGAAATCTGTCTTGTAATTGCCTATTATTTCTTTTTCTACTTTGGCTTAAAGAAACACTACTGTCGTGACAAACATTAGGAATGAGACAACCCCCTGTTAACTATAATGATGATTATATTGAGAATGTCTTTCAGAATCTTTAGATGTGAAAACTGACAGTTCAAACTTTTTTTTTCCTTGAACATTAGAAATATCAATCCTCAGTGGTTTGCGTAGAGGGTGAAACTGAGAGTGAGTAGATATGACCCTCATACATTTGTTTTTCCTTGAACATTAGAAATATCAATCCTCAGTGGTTTACGTAGAGGGTGAAACTGAGAGTGAGTAGATATGACCCTCGTACATTTGTTTGGGGTGCAAGCAGTGGCAGATCCAAACATTTTGTTGACGGGGTTTTTTAGTCAAGTAAAAGTAATCTGAAAAAAATGTAAGGAATGGTGCTTGAATCAAGGTCTAGAGGGGGCTGGATGACAGTTTTACCACTGGACTAGCAATTGGAATTGGTATAATTACAGTTTTCTATATATATATATATATAAATAGCATAAGGTTGACGGGGGGCTCAAGGTCCCCTTGGGCCTATAGTAAATCCACTGGTGGGTGCAAGTGGTGGATCGAGAGGCCTTTGCAAAATCATCTGTGAAGCTATCCCCTTTGTTTTCCATTATTCTCTCAATTTATCACTTACTTTGCTGGTGAAGGTTTGAAGGTTTATTTTTGGGAGGATTGCTAGTGGGATTTGAACCTCTTTGTTCTTTGTTTTGGAGGTAATATATATAGTCTTTCGAATAAAGAGGTTGCATTATGTGGCCTTAGTGTTGCCTTCAATAGACCCCTCTTCTTCGATTCCTGTAGAGGGTTCTAGCGTCCTTAGCATGATAGGGGTACATTGAAATTGGCTGATCTTTTTTCTCTTCTTTGAAACCAGCATGTCATTCCAAGGAGAAGAAATGTTAGTATTTGGTCCTCGGAACCCTTTAGGGGTTTCTTTTGGCATTATAATGTCATTCCACTTCTGGTTGCCTCTCTTTTCTCTCTTCCTATGTTTTGTTCATGCAACCATCAACAGTGCACTCTCTGAGGTACAAGGAGGACTTTTTATTTTGTTTTGGGATTTTCAGTTTACTCATCACCTTGAAGTTGTTGGTTGAGTGTCTGTTTGGTTTGGAATAGAGATGGCACCCTGGTGGAGTAGGTGCTTTCACGTTCTCCATTCAAGGAGCAGGGTAAAGTTTTTTTGCACTTCTACTTTTTTGAAGTTTTGTGGGGCATTTGGTGAGATGAACAATAGAATTTTCACGTGGGTGAAGAGATAGGTGAGAGGAAGTTTGGGAGGTGGCTAGGTTTAATGCTTCTTTGTGGGCGTCGATCACTGGGCATTCTTGTCGGATCAAACTCCCAATTTTTGTCGGGTCTTTTGTCTTTTTTGTTTACGGTGTTCTTTGTATATTCTTTCATTGCCTTGGTTAAGGATGGTTAAAATAATTTTAATATATGCCATTTGTTTGTATTTTCGTATATTTGTTTTTTTATTACATCATTTACATCATTGCCATTATTGATTTTGGTTTGATCTGTATTTTTATGTAGGTTCCCACTATGGCTATTGAAAAAGTTCTTTTTGCCAACAATACATCAATAGTCCAAGATGAAGTGCTTGCCCATAGGTTAGGTCTCGTTCCGATTCGTGTTGATCCAAGGCTTTTCAAGTACTCAGGTATTTCGGTGTGTATATATGTAAATTTAATGTGCTTATGCATATTGATGGTGAAAACTTCTAAATGCTTGTTGTCAGCTACTTTAAATTTGACTATCATCCTTGAACTTTTCAAGGACTTTAACTAATGATTTTGGTTTAAAATTAGATAAAGACGCACCAAATGAGAATAATACCATTGTTTTTAGACTCCATGCTTGCTGTGAACGAGGAAAACCACGTCTTACAGGTATTTTTCTTGTTTCTTTTGGAGTTCACCAACTTTTCTTAATTATTAACTGTTCACAACAATTTTCTTTTCTCATTACTAATGATGAGTGTATAATTGGTGATTCAGTGACATCAAAAGCATTGACGTGGTTGCCAAATGGTAGTGAATTTCCCTTGGTGTCAGACAAATCAGTTTCAAATTCAAAACCCAAAACCTATACTTCTTTTAGTTGCAGCCAGAACACACTGTCGAAAGAATTTTCCAACAATCCAATTGGTCCAAAGGACAGTGATATTATACTTGCTAGACTTGGCCCGGGTCAGGTAACTGAACCCTAGAATTTATTTCTTATCTGTTGAAAGATAGGGAAGAAGTGTTCATAGGTAGATAGATGTATGCTTTGAATAACATGTTTTGAATTTGAAATGGTTCTTGTGCTTGTAGTAAAATTATTGCTATTACATACGAATAGGTTTTTTACTTTATTTTATTTTTATAAGAAACAAATGTCATTGATGTATTAAATTTACAAAAGAAGGAATAATTTTACTTTGATAATATCAGACCAAATCGCTTAATGTAGAGTGTGAATAGTTGCTGGTCGAATATTTTCTAGGTCTGCCAAAAGGCTCTTTGAACAAAGAGTACTTTGTAGTCAACCTCCAAGCCCTCTGATCTCTTAAATGTGTCAAGTGGGTAGTGTTTAGTGGTTTCATGATGCTAAGTCATTCCTTCAATTCCTCATTAGATAGATTTCGCCTAAAAAACAAATAGGAATTTGACATATATAAATTTTAACTGGAGTTGCTATCGTTTCCAAAATAAGAAAGTTCTTTTCTATAGATATTTTTATGCTATTGTTCATAAAGTTGTCTCTTGGAGCAAATGCTCCCCCCTTGTTCATCATTATAGCCATTCTTCCCTTCTCTCCTATGAGGGAGGTGCGAGGTCTTTTGTAAATATTTTGTTTGGGGGTTTCCCTCCCCTTTGAAATTTCGTACCATCAACATTGTTTCTTATCCCAGGAAAGATATCACTTTAAATGTTGTACTTGTGCTATAAGACTAATTATTTATAATACAAGTTCCTCTGAATGCAGTGCTTATGCTATAAGGCTAATTGCCTCAGTTCTTAATGAGATATTGTTGCTCGGTAGTTAGTAAGTTTCTTAATTTTTGCTTCCAATGTTTATAGGAAATTGAGCTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACGCATGCTAAGTGGTCCCCTGTGGCCACTGCTTGGTACAGGATGCTTCCTGAGGTGAGTAAATATGTTAACGTGTTACTCAAGGATGCATTGATATATTGAACTGATGAAACTTATGATATTAGGTTGTACTCCTGGAAGAAATAGAGGAGGAGCTAGCTGAAGAACTAGAAAAGAAATGTCCTGTTAATGTATTTGACATTGAAGACATAGCTGGTTAGTATCCTTCTTACAGTTGCTATTAATTATGTACGTACTTGGAAGACCTATGATGTTGATGATTGGGAAATGGGAAGGTTACCTTGAGAATAAAGTTCTTGTGATGTATATAACTAATTTTTCTACTTTTGGGAGTCTTGTTTATATACTTGATGGAGTTATAAGCCTCGTAACCTTTCAAACATCAATGGTGTGTTACCCAATAAAAGCAGAGGTGGGGTTATCTTTACCTATTGCCTTTAGGTTGTTCTTTGGTTATTTAAGAATGTCTTTGTTTCTTAGCGTTAGAGTTAGTGGGCTTGGCCCATAGGAAAATTACGAGAGATTTGTCCTAAATATGTTTCCTTTTTTATCTCATTGTATTTTTCTATTTATTCCCCCTCTTGTATCTATTGTGTTTATTAGAAAATAATAAGAACAATATATCATAGTTTTTCTTACTGTTTCCACGTAACTCGGTGTTCTTGTGTTCATAACTTTAATATGGTATTAGAGCAAGGTAAAAATGATACCCTAGACACTATTATCGATGAAATCAAAAAAGAGACAGAAGAAACAACTGTAGTTGTCGCTGCCACCGTCGTGGACGTTGCTGTCGCCGCTGCCATGGAAAAGTTGCTCCACCAACTTCAGAAGACGCTGACAGTCTCAATGGCCTATCGTCGGAGACATCCACGCAGCCCAGTGGTCAAAATCTGCCTCACCGCCCAATCTTTGTGGTTGTTTTTCAGCTTGATCCTCTAACTTCTCTGTAATCTTCTTGCTCGACCGGTTGATTGAATCTTCTATTTCGCTCGTTGTCCTAGATTTCTCACGAATCATGTTTTCAAAATATTTCATTAGTTCGATTTCTCCTTTTTTTGCTTCTTCCATTTCTCTCTTTTTTGCTTCTTCGATTTCTCTTCTTTTTGTCTCTTCCTTCTCCATCGTTTCCATAAACAACAATATCATTTGTTGAGTCTTCTCGTTTAGTGCAATAATGTTTTCCATGTTTTCCAATATCGACGGCCGTTTCTCTTCCATGGCCGGTGTCGTGTTGAGTTCTTTCTTTATTCTGATCGGTTATTGCTCGTGTGCTTCCAATCTCTCCTCGATTCGCATCTGAACCATTTTTAGATTCGCTTCCAAGATCGATGTGCTCTGATACCAATTTGATAGAACACTGATATAGTGTTTCTATTTTATTGATACCTTCAACAGAATTACAATATAAAAGAAGTAAAAGAACAAGTAAAAGAACCATAACCCTCTCCCCTTCCTCTCTTTCAAGGAATGTTGCAGCCCTATTTCTTCTCCAAATTCCTCATGCCCTTCTTCACTCCCCAACTTCCTATTTATAACTAACTAACTACCAACAAATCTAATTACCTTTATATACATACCCTATATTAATCTATGTATCTAACAACAATCCAGTTCAACATGATAGAACCAAACATATTGAGATTGATCGACATTTCATCAAAGAAAGACTTGGCGGTGGGAGCATTTGCATTTCGTACATTCCTTCGAGCCAACAGGTTGTTGATGTTCTCACCAAAGGGCTTCTTAGACCAAACTTCGATTTCTATGATAGCAAGTTGTGTCTCATCGATATTTACATCCCAACTTGAGGGGGTGTTGAGTTAGTGGGCTTGGCCCATAGGGAAATTATGGGAGATTTGTCCTAAATATCTTTCATTTTTTGTCTCATTGCATCATTATATTTATTCCCCCTCTTGTATCTATTGTATTTATCAAAAAATAATAACAAAATATCGAGGTTTCTCTCGGTACTCGAGTTTTTACACAACTTTGGTGTTCATGTCTTATCACTTTTAATAAGCTGTTGGAAATTAGGGGCTAGTAGAGTGTTTATGGCTCTAAGGGTATTTGTGTAATAAAATTTATTGTACCCTAGTTTTATTTTCTTTTTTGTTAGGGCTTATTATGGCCTCTATATATTCTTCCCACTTGTATCCTTTTGGTCATTAGAAAATTATAAGAAAGACTTCTACGTGATTTTTTCTTCCTGTACTAGGAGTTTTCACGTATAACATGTGCTTTCTCTTCTTTCTTCTTTTTCAATATGGTATAAAAGCGAAGGAACGATGAAACCCTAGCCGTCATTGACGAAAATCAACCAATGGAAAACCCATGGAACCCTGGACCACCGGTGATAACCTCACAATCGCAACAGTTCCTGTCATTTTTCATATCGGAGCTGTTGTCGACCAATATTCCTTGCGCTTCCTACTACCTCATCCGTACGACTATCGTGAGATCTGTACAATGTCATCGTTTTTTTACCTACAGCTGCCCAGTAGCTGCTCTCGAAGTAGCTTTGGGTACTTCCACCTCCACAATTTTGTTATTCTGTTAGCCTTACTAATGTATTCAGGGAACCCAGTAACTTCCTTTCCTTTCATAACTATGGCAAATTATTTATGTAGCTCTATGGGAAATTCTACGGGTGTAATTGGAGGGGAGAAATTAAATGGCCAGTATTATTTCTCATGGTCTCAATCCATTAAGATGGCACTCGAAGGGCATTACAAATTCAGGTATCTAATTGAAGAGGTAACGAGACCCTTAAGAGAGAATTTGGACAGGGGAGGACTCTCTTCTTCGGTATGTGTTGATTAAAAATATGGGTGATCATCGGTTGGTATTTTGACAAAACCGACCTCAAACTGACCATAGTTGGTTTAGTAAAGTGTCAAACCAACCTCGACATCGATGAGTAAGGGCCGGTTGGTCGGGTCAGTTTAACACTTAAAAAATCCTGTTTAGAAATTATCGATTTGAAACTTTTCGAAACCAACTCCGACTGAACGATTTCGGTTTGGTCGGTCGGCTTGGTTTTTCGATATATCATGCTTACCTCAAATTAGCAGTATGGAACCTCAAATTGGGAATCCTTTGTTTTATGTTGCTCGCGGCATATGGGATACTGTAGTTTAGAAGTTATACTAAAAAAGACAAAATTATGGTTGCTTACTTCAAGGAGAATGGTTGAAAGAATTTTTTTTCTTAAGCTAGGAGATTAACTTTGATTAGATTGGTCTTTAGTGGTATTTTGGACTATTATATGGCGTTATTTTGTGTCCCATGTTAAGTTTGTAAAAGTTTGGAGAAGTACATGAGAGATTTTCTTTGGGAGGAGGGGGTCGACGAAGGCAATGGAGGCCATTTTGTGAGTTGGGAGATGGTGGGGTATTATCAAAGGGAGTTTGAGATTTGCAATCTTTGAATTCGTAATAGAGCGTTGGGGTTTACACATGAAACCCCTCCATAGTAGGCCTTTTGCTTCATCCCTCCCTCCATACAGAGTCGGTTTTTGATGTGGTCTAGAGGACTAAGGTTCCTAAAAGTTAGGTTCTTTATCTGGCAAGTCTTGCTTGGTCGTGTAAGCACTATGGATAGGCTTGTTTGGAAGAGGACTTCACTTGTTGGGCCTTTTTGTTGTATCATTGCATGCTTTGTTGGAAGGTGGAGGAAGATTTTGATCTTCTTTTGTGGGACTGTTATCATGCAAGGGTTGTGTGGAGCTCATTCTTGCAGGAGTTCAGTGTGAATTTTGTTAGCTTTAGAAGTGTCAGAGCGACAAGAGGAGTTTTTCCTCCATTTGCCTTTCAAATATAAAGGAGGTTTTTTATGGATGTTTGGGGTGTGTGCTATTGTTTGGGACACATTTAGGGTGAGGAACGAGAGGGTTTTTAGAGGTCGGGAGAGGGAGCTTAGCGAGATGTGGTCTTTGACTAGATTTCATGTTTCTCTTTAGGCTTCGATTTCGAAGCACTTTTGGAGTTATTCTATTGGTAACATTTTACTTAGTTGGTCCCCCTTCTATTAGTTGAGGTTGTTGGTGATATATAATTAAATTTGCCTTCAACCACTGGCTTAAGCTTTTGGATGAATTGGTGGTTTAATAGGGGTGTTTTCGTGGGCTGGTTTTTTTGGTACGCCCTTGTATTCTTTCATTCTTTCTCAATAAAAGCAATTTGGTTCTTAAAAAAAGGCAAAATGAGGTGCTTCTTTATACTTTGCACAAGCAAATTCACGAATGCAGGAAGGGACAATGGATGTCACTTCATATTTTAACAAGTTGTCCCTAATTTGGCAAGGATGGACTTGTGTCAAGAGATCGTCTGGAATTGCTCTTGTGGAGGTGATCAGTACTCTAAAATTGAGGAAATTGATCATGTATATGGTTTTCTTGTGGGTTTGAATTCCAAGTTTGACTTAGTTCGTGATCGTATACTAGGTCATAGGCCTATTCCTTCATTGATGGATGTATGTTTTAAGGTTTGGTTAGAGGAAGATCGCACAAATGCAATAAACATCGTGACTGTTTCTGATATTGATTCTGCAGCCTTCAATGAGAAGTTCTCCAGTTCTGACCATGAAAAGCAAAATGGGAAGCCTGTCCTGGTGTGTGAACATGGCAAGAAACTTGGGCATAAGAATGACAATTGTTGGAAGTTACATGATTGACCACCAAATGGTAAGAAAAGAAATGTGTGGAGATAGACATACATTTTATAAAGGAGAGAATTGACCATGATAGTATCTGTATTTCGTACATTCCTTATGATCAAAGAATTGTTGATGTCTTCACCAAAAGGTTAGCGAGGCAGAGCTTTGACTATTTTGTTAACAAGTTGGGTCTAATTGACATCTACGCTTCAACTTGAGGGGAGTGTTGGAAATTAGGGGCTAGTGGAGTGTTTATAGCCCTAAGGGTATTTGTGTAATTTATTTACCCTAGTTTTATTTCTATCGGAGTTTTTTCTCCCCTTACTAGGGTTTTTTAACGTATAACTTGTGCTTTCTCTTCTTCCACGTTTCTTTTACAATAATAAAAAAAAGGTAATAGGAGAAGAGAGTTAAAGATTTTGTCCTCTCAGTGTATGTTATATCCCTTGCATTTCTAATGAATAAATGTAGAGTTATTTGTTGTTTCTGATACTCAAAAGATGAATTCCAAGTTGTATGCTGTTACTCTTTTTTTACTGAGTTCAAATTGCATTTCTTTTTATGGACAATTTTTATTTTGTAGGTAAGAAAAGGGCAACCGTAGCACGCCCACGAGATTGCACATTGTGTAGAGAATGCATAAGAGGAGATGCATGGGAGAAACGTGTCGCACTGCGTCGTGTGAAGGATCATTTCATTTGTAAGTAATGATTGGTTCTACTTTTTTTAAGATGCTTGAACTGCCTGAAACAAGTATTTTGGCCAAAACACTGTACTTGCTATGTTTTGTTTTTTTAATGAGAACCCTACTAGTATTTTATTTACATAGTACTTCAAGTGCCTTTTAACTTCTATATAAAAAACTTAGAAATTACTTCTAAACCTAATAACTCTAAGTAGGTAAGTATTTTTGTCATGAAAAAGTCCTTTTAGTTGTGCCAAACATGCTACCAAATAAACCTGAACTTAGTTATCATCATATTACTATCTCACATTTAGAGATTTGAATCTCTAACCATTAGGTCAAAAGATATAATGTCTTACTCCTAACTAATTGAGCTAACATCAGGTTGGCTCTTAGCTACGCTCAAGTCATCATCTTATTGTTTGAAGAAAGTTACTTTTAGTTGAGATTAGGTTTATATTTTCTTTCATTTCCTATGCAGTTAAGATTGAATCAACAGGAGCTTTACCTCCCGAGGTTCTCTTCACTGAAGCTGTAAAGATTTTGGAAGATAAGTGCGAACGTTTAATTGCCGAGCTGTCTTAA

mRNA sequence

ATGTCCGGCAAAGATAAGAATTTGCATAATATGTCCGAGTCGGAATCCGAGCAAGAAGGCGTTGACAAAGAAGGCATTGAGTGGATAATGAATCTTCCAGACGTGCCCATGAAGCTCCCACCACATGTCGAATTGCAGAGAACTCGAGTCGAATGCAAAGCCGATGCTCCCATTCATACAGATACCATACAGTATTCTGGAGCATTTGCTTCCATGGGCTATGACAATAGTTTACGTCTGGATAATTTTCGCAACAACTTTAAAATTGAAGTTATTGATCTGAAAGAGGATGACATTGAGTTTGACATGATCGGCATTGATCCAGCACTTGCTAATGCATTTCGAAGAATCCTGATAGCCGAGGTTCCCACTATGGCTATTGAAAAAGTTCTTTTTGCCAACAATACATCAATAGTCCAAGATGAAGTGCTTGCCCATAGGTTAGGTCTCGTTCCGATTCGTGTTGATCCAAGGCTTTTCAAGTACTCAGATAAAGACGCACCAAATGAGAATAATACCATTGTTTTTAGACTCCATGCTTGCTGTGAACGAGGAAAACCACGTCTTACAGTGACATCAAAAGCATTGACGTGGTTGCCAAATGGTAGTGAATTTCCCTTGGTGTCAGACAAATCAGTTTCAAATTCAAAACCCAAAACCTATACTTCTTTTAGTTGCAGCCAGAACACACTGTCGAAAGAATTTTCCAACAATCCAATTGGTCCAAAGGACAGTGATATTATACTTGCTAGACTTGGCCCGGGTCAGGAAATTGAGCTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACGCATGCTAAGTGGTCCCCTGTGGCCACTGCTTGGTACAGGATGCTTCCTGAGGTTGTACTCCTGGAAGAAATAGAGGAGGAGCTAGCTGAAGAACTAGAAAAGAAATGTCCTGTTAATGTATTTGACATTGAAGACATAGCTGGTAAGAAAAGGGCAACCGTAGCACGCCCACGAGATTGCACATTGTGTAGAGAATGCATAAGAGGAGATGCATGGGAGAAACGTGTCGCACTGCGTCGTGTGAAGGATCATTTCATTTTTAAGATTGAATCAACAGGAGCTTTACCTCCCGAGGTTCTCTTCACTGAAGCTGTAAAGATTTTGGAAGATAAGTGCGAACGTTTAATTGCCGAGCTGTCTTAA

Coding sequence (CDS)

ATGTCCGGCAAAGATAAGAATTTGCATAATATGTCCGAGTCGGAATCCGAGCAAGAAGGCGTTGACAAAGAAGGCATTGAGTGGATAATGAATCTTCCAGACGTGCCCATGAAGCTCCCACCACATGTCGAATTGCAGAGAACTCGAGTCGAATGCAAAGCCGATGCTCCCATTCATACAGATACCATACAGTATTCTGGAGCATTTGCTTCCATGGGCTATGACAATAGTTTACGTCTGGATAATTTTCGCAACAACTTTAAAATTGAAGTTATTGATCTGAAAGAGGATGACATTGAGTTTGACATGATCGGCATTGATCCAGCACTTGCTAATGCATTTCGAAGAATCCTGATAGCCGAGGTTCCCACTATGGCTATTGAAAAAGTTCTTTTTGCCAACAATACATCAATAGTCCAAGATGAAGTGCTTGCCCATAGGTTAGGTCTCGTTCCGATTCGTGTTGATCCAAGGCTTTTCAAGTACTCAGATAAAGACGCACCAAATGAGAATAATACCATTGTTTTTAGACTCCATGCTTGCTGTGAACGAGGAAAACCACGTCTTACAGTGACATCAAAAGCATTGACGTGGTTGCCAAATGGTAGTGAATTTCCCTTGGTGTCAGACAAATCAGTTTCAAATTCAAAACCCAAAACCTATACTTCTTTTAGTTGCAGCCAGAACACACTGTCGAAAGAATTTTCCAACAATCCAATTGGTCCAAAGGACAGTGATATTATACTTGCTAGACTTGGCCCGGGTCAGGAAATTGAGCTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACGCATGCTAAGTGGTCCCCTGTGGCCACTGCTTGGTACAGGATGCTTCCTGAGGTTGTACTCCTGGAAGAAATAGAGGAGGAGCTAGCTGAAGAACTAGAAAAGAAATGTCCTGTTAATGTATTTGACATTGAAGACATAGCTGGTAAGAAAAGGGCAACCGTAGCACGCCCACGAGATTGCACATTGTGTAGAGAATGCATAAGAGGAGATGCATGGGAGAAACGTGTCGCACTGCGTCGTGTGAAGGATCATTTCATTTTTAAGATTGAATCAACAGGAGCTTTACCTCCCGAGGTTCTCTTCACTGAAGCTGTAAAGATTTTGGAAGATAAGTGCGAACGTTTAATTGCCGAGCTGTCTTAA

Protein sequence

MSGKDKNLHNMSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHTDTIQYSGAFASMGYDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHACCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEEELAEELEKKCPVNVFDIEDIAGKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERLIAELS*

Homology

[Close]

BLAST of Chy6G124250 vs. ExPASy Swiss-Prot
Match: Q32L22 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus OX=9913 GN=POLR1C PE=2 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 9.3e-79
Identity = 164/363 (45.18%), Postives = 220/363 (60.61%), Query Frame = 0


Query: 43  VELQRTRVECKADAPIHTDTIQYSGAFASMGYDNSLRLDNFRNNFKIEVIDLKEDDIEFD 102
           VE  RTRV        +  T  + G ++  GYD++   D F  NF+++V+ + E+ +EFD
Sbjct: 7   VEEMRTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 66

Query: 103 MIGIDPALANAFRRILIAEVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKY 162
           M+GID A+ANAFRRIL+AEVPTMA+EKVL  NNTSIVQDE+LAHRLGL+PI  DPRLF+Y
Sbjct: 67  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 126

Query: 163 SDK--DAPNENNTIVFRLHACCERGKPRL-------------TVTSKALTWLPNGSEFPL 222
            ++  +   E +T+ FRL   C R                   V ++ +TW+P G++  L
Sbjct: 127 RNQGDEGGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHRVYTRHMTWVPLGNQADL 186

Query: 223 VSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKG 282
                                      F    I P   DI++A+L PGQEI+L  H VKG
Sbjct: 187 ---------------------------FPEGAIRPVHDDILIAQLRPGQEIDLLMHCVKG 246

Query: 283 MGKTHAKWSPVATAWYRMLPEVVLLEEIEEELAEELEKKCPVNVFDIEDIAGKKRATVAR 342
           +GK HAK+SPVATA YR+LP++ LLE +E E AEEL +     V ++++I GKK A VA 
Sbjct: 247 IGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEIQGKKVARVAN 306

Query: 343 PRDCTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERLI 391
           PR  T  RE  R +  +K V L RV+DHFIF +ESTG LPP+VL +EA+K+L  KC+R +
Sbjct: 307 PRLDTFSREVFRNEKLKKVVRLARVRDHFIFSVESTGVLPPDVLVSEAIKVLMGKCQRFL 340

[Close]

BLAST of Chy6G124250 vs. ExPASy Swiss-Prot
Match: O15160 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens OX=9606 GN=POLR1C PE=1 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 1.3e-77
Identity = 161/363 (44.35%), Postives = 219/363 (60.33%), Query Frame = 0


Query: 43  VELQRTRVECKADAPIHTDTIQYSGAFASMGYDNSLRLDNFRNNFKIEVIDLKEDDIEFD 102
           VE  R+RV        +  T  + G ++  GYD++   D F  NF+++V+ + E+ +EFD
Sbjct: 7   VEEMRSRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 66

Query: 103 MIGIDPALANAFRRILIAEVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKY 162
           M+GID A+ANAFRRIL+AEVPTMA+EKVL  NNTSIVQDE+LAHRLGL+PI  DPRLF+Y
Sbjct: 67  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 126

Query: 163 SDK--DAPNENNTIVFRLHACCERGKPRL-------------TVTSKALTWLPNGSEFPL 222
            ++  +   E +T+ FRL   C R                   V ++ +TW+P G++  L
Sbjct: 127 RNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADL 186

Query: 223 VSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKG 282
                                      F    I P   DI++A+L PGQEI+L  H VKG
Sbjct: 187 ---------------------------FPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKG 246

Query: 283 MGKTHAKWSPVATAWYRMLPEVVLLEEIEEELAEELEKKCPVNVFDIEDIAGKKRATVAR 342
           +GK HAK+SPVATA YR+LP++ LLE +E E AEEL +     V +++++ GKK A VA 
Sbjct: 247 IGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVAN 306

Query: 343 PRDCTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERLI 391
           PR  T  RE  R +  +K V L RV+DH+IF +ESTG LPP+VL +EA+K+L  KC R +
Sbjct: 307 PRLDTFSREIFRNEKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFL 340

[Close]

BLAST of Chy6G124250 vs. ExPASy Swiss-Prot
Match: P52432 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus OX=10090 GN=Polr1c PE=1 SV=3)

HSP 1 Score: 288.5 bits (737), Expect = 1.1e-76
Identity = 163/350 (46.57%), Postives = 215/350 (61.43%), Query Frame = 0


Query: 43  VELQRTRVECKADAPIHTDTIQYSGAFASMGYDNSLRLDNFRNNFKIEVIDLKEDDIEFD 102
           VE  RTRV        +  T  + G +A  GYD++   + F  NF+++V+ + ED +EFD
Sbjct: 7   VEEMRTRVVLGEFGVRNVHTTDFPGNYA--GYDDAWDQNRFEKNFRVDVVQMDEDTLEFD 66

Query: 103 MIGIDPALANAFRRILIAEVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKY 162
           M+GID A+ANAFRRIL+AEVPTMA+EKVL  NNTSIVQDE+LAHRLGL+PI  DPRLF+Y
Sbjct: 67  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 126

Query: 163 SD--KDAPNENNTIVFRLHACCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKT 222
            +  ++   E +T+ FRL   C R               PN ++     ++   N K  T
Sbjct: 127 RNQGEEEGTEIDTLQFRLQVRCTRN--------------PNAAKDSSDPNELYVNHKVYT 186

Query: 223 YTSFSCSQNTLSKEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVAT 282
                      +  F    I P   DI++A+L PGQEI+L  H VKG+GK HAK+SPVAT
Sbjct: 187 RHMTWVPLGNQADVFPEGTIRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVAT 246

Query: 283 AWYRMLPEVVLLEEIEEELAEELEKKCPVNVFDIEDIAGKKRATVARPRDCTLCRECIRG 342
           A YR+LP + LLE +E E AEEL +     V ++E++ GKK A VA  R  T  RE  R 
Sbjct: 247 ASYRLLPAITLLEPVEGEAAEELSQCFSPGVIEVEEVQGKKVARVANARLDTFSREIFRH 306

Query: 343 DAWEKRVALRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERLIAEL 391
           +  +K V L RV+DH+IF +ESTG LPP+VL +EA+KIL  KC R + EL
Sbjct: 307 EKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 340

[Close]

BLAST of Chy6G124250 vs. ExPASy Swiss-Prot
Match: Q54SN4 (DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum OX=44689 GN=polr1c PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 3.8e-72
Identity = 149/352 (42.33%), Postives = 212/352 (60.23%), Query Frame = 0


Query: 41  PHVELQRTRVECKADAPIHTDTIQYSGAFASMGYDNSLRLDNFRNNFKIEVIDLKEDDIE 100
           P++E +RT+V        +     YSGA+ S+GYDNS  L+ F+ NFKI ++    +++ 
Sbjct: 13  PNLENKRTKVTLTNSGVENARGTYYSGAYTSVGYDNSFNLNRFKENFKINILSESANELV 72

Query: 101 FDMIGIDPALANAFRRILIAEVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLF 160
           F+MIGID  +ANA RRI+I+E+PTMAIEKV   NNTSI+QDEVLAHRLG++PI+VDPR F
Sbjct: 73  FEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHRLGMIPIKVDPRKF 132

Query: 161 KYSDKDAPNE----NNTIVFRLHACCER----GK-PRLTVTSKALTWLPNGSEFPLVSDK 220
            +     PN+     +T++F+L   CE+    GK    T  SK L W+P   +  +  ++
Sbjct: 133 NFK---LPNKEYTAEDTLIFQLKVKCEKDSVTGKIINETALSKHLIWVPTQDQEEMFPNE 192

Query: 221 SVSNSKPKTYTSFSCSQNTLSKEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKGMGKT 280
                +P+                      P + DI + +L PGQ I+++ +  K +G+ 
Sbjct: 193 ---EDRPR----------------------PMEDDIPIMKLRPGQVIDIQCYCEKNIGRE 252

Query: 281 HAKWSPVATAWYRMLPEVVLLEEIEEELAEELEKKCPVNVFDIEDIAGKKRATVARPRDC 340
           H KWSPV TA YR+ P + + + I+ + A +L +KCP  VFDIED     +   ARP DC
Sbjct: 253 HIKWSPVCTASYRLQPVISVDKSIKGDKANQLLEKCPKKVFDIED---SGQVVAARPLDC 312

Query: 341 TLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKC 384
           T+CRECIR   +E+ V + RV+DHFIF IESTGAL    +F EA+KI  +KC
Sbjct: 313 TMCRECIRDPEFEQNVKIERVRDHFIFSIESTGALKSREIFQEAIKIFIEKC 333

[Close]

BLAST of Chy6G124250 vs. ExPASy Swiss-Prot
Match: O94616 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc40 PE=1 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 7.6e-65
Identity = 142/361 (39.34%), Postives = 208/361 (57.62%), Query Frame = 0


Query: 43  VELQRTRVECKADAPIHTDTIQYSGAFASMGYDNSLRLDNFRNNFKIEVIDLKEDDIEFD 102
           V+  RT +   +D      ++ + G +     DN   LD F+ N K+ +  L ++ + F+
Sbjct: 4   VDRSRTEISVLSDRVTDVGSVDFPGYY--FDEDNIWDLDKFKKNLKVSITSLDQETMVFE 63

Query: 103 MIGIDPALANAFRRILIAEVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKY 162
           + GID ++ANAFRRILIAE+PT+A E V   NNTSI+QDEVL+HR+GLVPI  DP +FK+
Sbjct: 64  ISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKW 123

Query: 163 SDKDAPNEN------NTIVFRLHACCERGK---------PRLTVTSKA----LTWLPNGS 222
                P +       +T+VF L+  CE  K          RL V S+     L W P G 
Sbjct: 124 FQHPLPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGR 183

Query: 223 EFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPIGPKDSDIILARLGPGQEIELEAH 282
           +                            + F++NPI   + DI++A+L PGQEI+LEAH
Sbjct: 184 Q---------------------------EERFADNPIRVVNPDIVVAKLRPGQEIDLEAH 243

Query: 283 AVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEEELAEELEKKCPVNVFDIED-IAGKKR 342
           A+ G+G+ HAK+SPVATA YR+LP + +L  IE E A + +K  P  V ++E+   GKK+
Sbjct: 244 AILGIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQ 303

Query: 343 ATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPEVLFTEAVKILEDK 384
           A VA  R  T+ REC+R   +  +V L RV+DH++F +ESTG + P+VLF +++ +L+ K
Sbjct: 304 ARVADVRKDTVSRECLRHPEFADKVQLGRVRDHYLFSVESTGIMKPDVLFIKSIAVLKSK 335

[Close]

BLAST of Chy6G124250 vs. ExPASy TrEMBL
Match: A0A0A0L637 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis sativus OX=3659 GN=Csa_3G047880 PE=3 SV=1)

HSP 1 Score: 782.3 bits (2019), Expect = 9.3e-223
Identity = 387/391 (98.98%), Postives = 391/391 (100.00%), Query Frame = 0


Query: 1   MSGKDKNLHNMSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60
           MSGKDKNLHNMSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFASMGYDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120
           DTIQYSGAFASMG+DNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILI+
Sbjct: 61  DTIQYSGAFASMGFDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIS 120

Query: 121 EVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHA 180
           EVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHA
Sbjct: 121 EVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHA 180

Query: 181 CCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPI 240
           CCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPI
Sbjct: 181 CCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPI 240

Query: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEEELA 300
           GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVL+EEIE+ELA
Sbjct: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLMEEIEDELA 300

Query: 301 EELEKKCPVNVFDIEDIAGKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFKI 360
           EELEKKCPVNVFDIEDIAGKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFKI
Sbjct: 301 EELEKKCPVNVFDIEDIAGKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFKI 360

Query: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 392
           ESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of Chy6G124250 vs. ExPASy TrEMBL
Match: A0A1S4DX61 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis melo OX=3656 GN=LOC103491032 PE=3 SV=1)

HSP 1 Score: 724.5 bits (1869), Expect = 2.3e-205
Identity = 364/392 (92.86%), Postives = 376/392 (95.92%), Query Frame = 0


Query: 1   MSGKDKNLH-NMSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIH 60
           MSGKDKNLH  M+ESESEQE V KEGIEWIMNLPDVPMKLPPHVELQRTRVECK DAPIH
Sbjct: 1   MSGKDKNLHIMMTESESEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKGDAPIH 60

Query: 61  TDTIQYSGAFASMGYDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILI 120
           TDTIQYSGAFASMG+DNSLRLDNFRNNFKIEVI+LK DDIEFDMIGIDPALANAFRRILI
Sbjct: 61  TDTIQYSGAFASMGFDNSLRLDNFRNNFKIEVINLKGDDIEFDMIGIDPALANAFRRILI 120

Query: 121 AEVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLH 180
           AEVPTMAIEKVLFANNTSIVQDEVLAHRLGL+PIRVDPRLFKYSDKDAPNENNTIVFRLH
Sbjct: 121 AEVPTMAIEKVLFANNTSIVQDEVLAHRLGLIPIRVDPRLFKYSDKDAPNENNTIVFRLH 180

Query: 181 ACCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNP 240
           A CERGKPRLTV S+ALTWLPNGSEFPLVSDKS+ NSKP+TYTSFSCSQ+ L  EFS N 
Sbjct: 181 ARCERGKPRLTVKSEALTWLPNGSEFPLVSDKSIPNSKPQTYTSFSCSQDKL-PEFSKNS 240

Query: 241 IGPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEEEL 300
           IGPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEV+LLEEIE+EL
Sbjct: 241 IGPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVLLLEEIEDEL 300

Query: 301 AEELEKKCPVNVFDIEDIAGKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFK 360
           AEEL++KCPVNVFDIEDIAGKKRATVARPR CTLCRECIRGDAWEKRVALRRVKDHFIFK
Sbjct: 301 AEELKRKCPVNVFDIEDIAGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFK 360

Query: 361 IESTGALPPEVLFTEAVKILEDKCERLIAELS 392
           IESTGALPP VLFTEAVKILEDKCERLIAELS
Sbjct: 361 IESTGALPPNVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of Chy6G124250 vs. ExPASy TrEMBL
Match: A0A6J1FDA3 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita moschata OX=3662 GN=LOC111443051 PE=3 SV=1)

HSP 1 Score: 716.8 bits (1849), Expect = 4.8e-203
Identity = 358/392 (91.33%), Postives = 374/392 (95.41%), Query Frame = 0


Query: 1   MSGKDKNLHNMSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60
           MSGKDKNLHNMSES+SEQE V KEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFASMGYDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120
           DTIQYSGA+AS+G DNSLRLD+FR NFKIEVIDLKEDD+EFDMIGIDP+LANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHA 180
           EVPTMAIEKVL ANNTSIVQDEVLAHRLGL+PIRVDPRLF+YSDKD PNE NTIVFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 CCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPI 240
            CERGKPRLT TSKALTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQ+TL  EF+NNPI
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTL-PEFANNPI 240

Query: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEEELA 300
           GPKD DIILARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLE+IE+ELA
Sbjct: 241 GPKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELA 300

Query: 301 EELEKKCPVNVFDIEDIA-GKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFK 360
           EEL+ KCPVNVFDIEDIA GKKRATVARPR CTLCRECIRG+AWEKRV+LRRVKDHFIFK
Sbjct: 301 EELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFK 360

Query: 361 IESTGALPPEVLFTEAVKILEDKCERLIAELS 392
           IESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 IESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of Chy6G124250 vs. ExPASy TrEMBL
Match: A0A6J1L269 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita maxima OX=3661 GN=LOC111498423 PE=3 SV=1)

HSP 1 Score: 714.1 bits (1842), Expect = 3.1e-202
Identity = 357/392 (91.07%), Postives = 374/392 (95.41%), Query Frame = 0


Query: 1   MSGKDKNLHNMSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60
           MSG+DKNLH+MSES+SEQE V KEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT
Sbjct: 1   MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFASMGYDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120
           DTIQYSGA+AS+G DNSLRLD+FR NFKIEVIDLKEDD+EFDMIGIDP+LANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHA 180
           EVPTMAIEKVL ANNTSIVQDEVLAHRLGL+PIRVDPRLF+YSDKD PNE NTIVFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 CCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPI 240
            CERGKPRLT TS+ALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQ+TL  EF+NNPI
Sbjct: 181 RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTL-PEFANNPI 240

Query: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEEELA 300
           GPKD DIILARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIE+ELA
Sbjct: 241 GPKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELA 300

Query: 301 EELEKKCPVNVFDIEDIA-GKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFK 360
           EEL+ KCPVNVFDIEDIA GKKRATVARPR CTLCRECIRG+AWEKRV+LRRVKDHFIFK
Sbjct: 301 EELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFK 360

Query: 361 IESTGALPPEVLFTEAVKILEDKCERLIAELS 392
           IESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 IESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of Chy6G124250 vs. ExPASy TrEMBL
Match: A0A6J1DXI7 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3673 GN=LOC111025015 PE=3 SV=1)

HSP 1 Score: 684.9 bits (1766), Expect = 2.0e-193
Identity = 344/382 (90.05%), Postives = 361/382 (94.50%), Query Frame = 0


Query: 11  MSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHTDTIQYSGAFA 70
           MS+SESEQ    KEGIEWIMNLPDVPMKLPPH+E+QRTRVECKADAPIHTDTIQYSGA+A
Sbjct: 1   MSDSESEQV-AGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHTDTIQYSGAYA 60

Query: 71  SMGYDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKV 130
           SMG DNSLRLD FRNNFKIEVIDL EDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKV
Sbjct: 61  SMGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKV 120

Query: 131 LFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHACCERGKPRLT 190
           L ANNTS++QDEVLAHRLGL+PI VDPRLF+YSDKD PNE NTIVFRLHA CERGKPRLT
Sbjct: 121 LVANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLT 180

Query: 191 VTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPIGPKDSDIILA 250
           VTSK LTWLPNGSEFPLVSDKSV NSKPKTYTSFSCSQ+TL  EFSNN IGPKD+DII+A
Sbjct: 181 VTSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTL-PEFSNNSIGPKDNDIIIA 240

Query: 251 RLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEEELAEELEKKCPVN 310
           RLGPGQEIELEAHAVKGMGKTHAKWSPVATAWY+MLPEVVL EEIE+ELAEEL+KKCPV+
Sbjct: 241 RLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVD 300

Query: 311 VFDIEDIA-GKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPE 370
           VFDIEDIA GKKRA VARPR CTLCRECIRG+AWEKRV+LRRVKDHFIFKIESTGALPPE
Sbjct: 301 VFDIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPE 360

Query: 371 VLFTEAVKILEDKCERLIAELS 392
           VLFTEAVKILEDKCERLIAELS
Sbjct: 361 VLFTEAVKILEDKCERLIAELS 380

[Close]

BLAST of Chy6G124250 vs. NCBI nr
Match: XP_004148257.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucumis sativus] >KGN56027.1 hypothetical protein Csa_010312 [Cucumis sativus])

HSP 1 Score: 773 bits (1997), Expect = 6.89e-282
Identity = 387/391 (98.98%), Postives = 391/391 (100.00%), Query Frame = 0


Query: 1   MSGKDKNLHNMSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60
           MSGKDKNLHNMSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFASMGYDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120
           DTIQYSGAFASMG+DNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILI+
Sbjct: 61  DTIQYSGAFASMGFDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIS 120

Query: 121 EVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHA 180
           EVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHA
Sbjct: 121 EVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHA 180

Query: 181 CCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPI 240
           CCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPI
Sbjct: 181 CCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPI 240

Query: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEEELA 300
           GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVL+EEIE+ELA
Sbjct: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLMEEIEDELA 300

Query: 301 EELEKKCPVNVFDIEDIAGKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFKI 360
           EELEKKCPVNVFDIEDIAGKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFKI
Sbjct: 301 EELEKKCPVNVFDIEDIAGKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFKI 360

Query: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391
           ESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of Chy6G124250 vs. NCBI nr
Match: XP_038903474.1 (DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida] >XP_038903475.1 DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida] >XP_038903476.1 DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida])

HSP 1 Score: 733 bits (1891), Expect = 9.50e-266
Identity = 371/391 (94.88%), Postives = 379/391 (96.93%), Query Frame = 0


Query: 1   MSGKDKNLHNMSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60
           MSGKDK+LHNMS+SESEQEGV KEGIEWIMNLPDVPMKLPPH+ELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKSLHNMSDSESEQEGVAKEGIEWIMNLPDVPMKLPPHLELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFASMGYDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120
           DTIQYSGAFASMG DNSLRLD FRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA
Sbjct: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120

Query: 121 EVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHA 180
           EVPTMAIEKVL ANNTSIVQDEVLAHRLGLVPI VDPRLF+YSDKD PNE NTIVFRLHA
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLVPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 180

Query: 181 CCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPI 240
           CCERGK RLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQ+TL  EFSNNPI
Sbjct: 181 CCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTL-PEFSNNPI 240

Query: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEEELA 300
           GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEI++ELA
Sbjct: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIKDELA 300

Query: 301 EELEKKCPVNVFDIEDIAGKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFKI 360
           EEL+KKCPVNVFDIEDIAGKKRATVARPR CTLCRECIRGD WEKRVALRRVKDHFIFKI
Sbjct: 301 EELKKKCPVNVFDIEDIAGKKRATVARPRACTLCRECIRGDVWEKRVALRRVKDHFIFKI 360

Query: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391
           ESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 390

[Close]

BLAST of Chy6G124250 vs. NCBI nr
Match: XP_008449040.1 (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Cucumis melo] >XP_008449041.1 PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Cucumis melo] >XP_008449042.1 PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Cucumis melo] >XP_016900567.1 PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Cucumis melo])

HSP 1 Score: 716 bits (1847), Expect = 5.00e-259
Identity = 364/392 (92.86%), Postives = 376/392 (95.92%), Query Frame = 0


Query: 1   MSGKDKNLH-NMSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIH 60
           MSGKDKNLH  M+ESESEQE V KEGIEWIMNLPDVPMKLPPHVELQRTRVECK DAPIH
Sbjct: 1   MSGKDKNLHIMMTESESEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKGDAPIH 60

Query: 61  TDTIQYSGAFASMGYDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILI 120
           TDTIQYSGAFASMG+DNSLRLDNFRNNFKIEVI+LK DDIEFDMIGIDPALANAFRRILI
Sbjct: 61  TDTIQYSGAFASMGFDNSLRLDNFRNNFKIEVINLKGDDIEFDMIGIDPALANAFRRILI 120

Query: 121 AEVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLH 180
           AEVPTMAIEKVLFANNTSIVQDEVLAHRLGL+PIRVDPRLFKYSDKDAPNENNTIVFRLH
Sbjct: 121 AEVPTMAIEKVLFANNTSIVQDEVLAHRLGLIPIRVDPRLFKYSDKDAPNENNTIVFRLH 180

Query: 181 ACCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNP 240
           A CERGKPRLTV S+ALTWLPNGSEFPLVSDKS+ NSKP+TYTSFSCSQ+ L  EFS N 
Sbjct: 181 ARCERGKPRLTVKSEALTWLPNGSEFPLVSDKSIPNSKPQTYTSFSCSQDKL-PEFSKNS 240

Query: 241 IGPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEEEL 300
           IGPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEV+LLEEIE+EL
Sbjct: 241 IGPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVLLLEEIEDEL 300

Query: 301 AEELEKKCPVNVFDIEDIAGKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFK 360
           AEEL++KCPVNVFDIEDIAGKKRATVARPR CTLCRECIRGDAWEKRVALRRVKDHFIFK
Sbjct: 301 AEELKRKCPVNVFDIEDIAGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFK 360

Query: 361 IESTGALPPEVLFTEAVKILEDKCERLIAELS 391
           IESTGALPP VLFTEAVKILEDKCERLIAELS
Sbjct: 361 IESTGALPPNVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of Chy6G124250 vs. NCBI nr
Match: XP_022936430.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata] >XP_022936440.1 DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata] >XP_022936448.1 DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata])

HSP 1 Score: 708 bits (1827), Expect = 5.58e-256
Identity = 358/392 (91.33%), Postives = 374/392 (95.41%), Query Frame = 0


Query: 1   MSGKDKNLHNMSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60
           MSGKDKNLHNMSES+SEQE V KEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFASMGYDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120
           DTIQYSGA+AS+G DNSLRLD+FR NFKIEVIDLKEDD+EFDMIGIDP+LANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHA 180
           EVPTMAIEKVL ANNTSIVQDEVLAHRLGL+PIRVDPRLF+YSDKD PNE NTIVFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 CCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPI 240
            CERGKPRLT TSKALTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQ+TL  EF+NNPI
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTL-PEFANNPI 240

Query: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEEELA 300
           GPKD DIILARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLE+IE+ELA
Sbjct: 241 GPKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELA 300

Query: 301 EELEKKCPVNVFDIEDIA-GKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFK 360
           EEL+ KCPVNVFDIEDIA GKKRATVARPR CTLCRECIRG+AWEKRV+LRRVKDHFIFK
Sbjct: 301 EELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFK 360

Query: 361 IESTGALPPEVLFTEAVKILEDKCERLIAELS 391
           IESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 IESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of Chy6G124250 vs. NCBI nr
Match: XP_023540473.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita pepo subsp. pepo] >XP_023540474.1 DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 707 bits (1825), Expect = 1.12e-255
Identity = 358/392 (91.33%), Postives = 373/392 (95.15%), Query Frame = 0


Query: 1   MSGKDKNLHNMSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60
           MSGKDKNLHNMSES+SE E V KEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESDSEHEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFASMGYDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120
           DTIQYSGA+AS+G DNSLRLD+FR NFKIEVIDLKEDD+EFDMIGIDP+LANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHA 180
           EVPTMAIEKVL ANNTSIVQDEVLAHRLGL+PIRVDPRLF+YSDKD PNE NTIVFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 CCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPI 240
            CERGKPRLT TSKALTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQ+TL  EF+NNPI
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTL-PEFANNPI 240

Query: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEEELA 300
           GPKD DIILARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIE+ELA
Sbjct: 241 GPKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELA 300

Query: 301 EELEKKCPVNVFDIEDIA-GKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFK 360
           EEL+ KCPVNVFDIEDIA GKKRATVARPR CTLCRECIRG+AWEKRV+LRRVKDHFIFK
Sbjct: 301 EELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFK 360

Query: 361 IESTGALPPEVLFTEAVKILEDKCERLIAELS 391
           IESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 IESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of Chy6G124250 vs. TAIR 10
Match: AT1G60620.1 (RNA polymerase I subunit 43 )

HSP 1 Score: 490.0 bits (1260), Expect = 1.8e-138
Identity = 248/366 (67.76%), Postives = 294/366 (80.33%), Query Frame = 0


Query: 29  IMNLPDVPMKLPPHVELQRTRVECKADAPIHTDTIQYSGAFASMGYDNSLRLDNFRNNFK 88
           I +LPDVP  LPPH+ELQRTRV CK D+ IH   I +SGA++SMG DNS+RL+NF  +FK
Sbjct: 23  IFDLPDVPTGLPPHLELQRTRVVCKKDSNIHPTAITFSGAYSSMGVDNSVRLENFSEDFK 82

Query: 89  IEVIDLKEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLFANNTSIVQDEVLAHRL 148
           ++VI L E D+ FDMIG+   +ANAFRRIL+AE+P+MAIEKV  ANNTS++QDEVLAHRL
Sbjct: 83  VDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHRL 142

Query: 149 GLVPIRVDPRLFKY-SDKDAPNENNTIVFRLHACCERGKPRLTVTSKALTWLPNGSEFPL 208
           GL+PI  DPRLF+Y S+ D PNE NTIVF+LH  C +G PR  V +  L WLPNGSE  L
Sbjct: 143 GLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLPNGSE--L 202

Query: 209 VSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKG 268
           + +   S + PKTYTSF+ SQ++   EF+ NPI P   DI++A+LGPGQEIELEAHAVKG
Sbjct: 203 IKESGGSTTTPKTYTSFNHSQDSF-PEFAENPIRPTLKDILIAKLGPGQEIELEAHAVKG 262

Query: 269 MGKTHAKWSPVATAWYRMLPEVVLLEEIEEELAEELEKKCPVNVFDIEDIA-GKKRATVA 328
           +GKTHAKWSPVATAWYRMLPEVVLL+E E + AEEL K CP  VFDIED+  G+KRATVA
Sbjct: 263 IGKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVFDIEDMGQGRKRATVA 322

Query: 329 RPRDCTLCRECIR-GDAWEKRVALRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCER 388
           RPRDC+LCRECIR G  WE +V LRRVK+HFIF IESTG+ PPEVLF EAVKILEDKCER
Sbjct: 323 RPRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEAVKILEDKCER 382

Query: 389 LIAELS 392
           +I+ELS
Sbjct: 383 VISELS 385

[Close]

BLAST of Chy6G124250 vs. TAIR 10
Match: AT1G60850.2 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 455.7 bits (1171), Expect = 3.8e-128
Identity = 234/361 (64.82%), Postives = 281/361 (77.84%), Query Frame = 0


Query: 29  IMNLPDVPMKLPPHVELQRTRVECKADAPIHTDTIQYSGAF-ASMGYDNSLRLDNFRNNF 88
           I +LPDVP  LPPH++ Q+TRV  K +AP HT +  YSG + +S   D++++L NF +NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 89  KIEVIDLKEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLFANNTSIVQDEVLAHR 148
           K++V+ L + D+EFDMIGID A ANAFRRILIAEVP+MAIEKVL A NTS++ DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 149 LGLVPIRVDPRLFKY-SDKDAPNENNTIVFRLHACCERGKPRLTVTSKALTWLPNGSEFP 208
           +GL+PI  DPRLF+Y S+ D  NE NTIVF+LH  C + +PRL V +  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 209 LVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPIGPKDSDIILARLGPGQEIELEAHAVK 268
           L+ +     SKPKTYTSFSCSQ++L  EF+NNPI P D DI++A+L PGQEIELEAHAVK
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSL-PEFANNPITPCDLDILIAKLAPGQEIELEAHAVK 254

Query: 269 GMGKTHAKWSPVATAWYRMLPEVVLLEEIEEELAEELEKKCPVNVFDIEDIA-GKKRATV 328
           G+GKTHAKWSPV TAWYRM PEVVL  E+E+ELAE L   CP NVFDIED+  GKKRATV
Sbjct: 255 GIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATV 314

Query: 329 ARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCER 387
           A+PR CTLC+EC+R D     V L  VK+HFIF IESTG+LPPEVLFTEAVKILE KCE 
Sbjct: 315 AQPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCEA 372

[Close]

BLAST of Chy6G124250 vs. TAIR 10
Match: AT1G60850.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 455.7 bits (1171), Expect = 3.8e-128
Identity = 234/361 (64.82%), Postives = 281/361 (77.84%), Query Frame = 0


Query: 29  IMNLPDVPMKLPPHVELQRTRVECKADAPIHTDTIQYSGAF-ASMGYDNSLRLDNFRNNF 88
           I +LPDVP  LPPH++ Q+TRV  K +AP HT +  YSG + +S   D++++L NF +NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 89  KIEVIDLKEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLFANNTSIVQDEVLAHR 148
           K++V+ L + D+EFDMIGID A ANAFRRILIAEVP+MAIEKVL A NTS++ DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 149 LGLVPIRVDPRLFKY-SDKDAPNENNTIVFRLHACCERGKPRLTVTSKALTWLPNGSEFP 208
           +GL+PI  DPRLF+Y S+ D  NE NTIVF+LH  C + +PRL V +  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 209 LVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPIGPKDSDIILARLGPGQEIELEAHAVK 268
           L+ +     SKPKTYTSFSCSQ++L  EF+NNPI P D DI++A+L PGQEIELEAHAVK
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSL-PEFANNPITPCDLDILIAKLAPGQEIELEAHAVK 254

Query: 269 GMGKTHAKWSPVATAWYRMLPEVVLLEEIEEELAEELEKKCPVNVFDIEDIA-GKKRATV 328
           G+GKTHAKWSPV TAWYRM PEVVL  E+E+ELAE L   CP NVFDIED+  GKKRATV
Sbjct: 255 GIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATV 314

Query: 329 ARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCER 387
           A+PR CTLC+EC+R D     V L  VK+HFIF IESTG+LPPEVLFTEAVKILE KCE 
Sbjct: 315 AQPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCEA 372

[Close]

BLAST of Chy6G124250 vs. TAIR 10
Match: AT1G60850.3 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 328.9 bits (842), Expect = 5.4e-90
Identity = 167/263 (63.50%), Postives = 205/263 (77.95%), Query Frame = 0


Query: 29  IMNLPDVPMKLPPHVELQRTRVECKADAPIHTDTIQYSGAF-ASMGYDNSLRLDNFRNNF 88
           I +LPDVP  LPPH++ Q+TRV  K +AP HT +  YSG + +S   D++++L NF +NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 89  KIEVIDLKEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLFANNTSIVQDEVLAHR 148
           K++V+ L + D+EFDMIGID A ANAFRRILIAEVP+MAIEKVL A NTS++ DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 149 LGLVPIRVDPRLFKY-SDKDAPNENNTIVFRLHACCERGKPRLTVTSKALTWLPNGSEFP 208
           +GL+PI  DPRLF+Y S+ D  NE NTIVF+LH  C + +PRL V +  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 209 LVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPIGPKDSDIILARLGPGQEIELEAHAVK 268
           L+ +     SKPKTYTSFSCSQ++L  EF+NNPI P D DI++A+L PGQEIELEAHAVK
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSL-PEFANNPITPCDLDILIAKLAPGQEIELEAHAVK 254

Query: 269 GMGKTHAKWSPVATAWYRMLPEV 290
           G+GKTHAKWSPV TAWYRM PEV
Sbjct: 255 GIGKTHAKWSPVGTAWYRMHPEV 274

[Close]

BLAST of Chy6G124250 vs. TAIR 10
Match: AT2G15430.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 136.7 bits (343), Expect = 3.9e-32
Identity = 99/312 (31.73%), Postives = 163/312 (52.24%), Query Frame = 0


Query: 88  KIEVIDLKEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLFANNTSIVQDEVLAHR 147
           KI++ +LK+D  +F++   D ++ANA RR++I+EVPT+AI+ V    N+S++ DE +AHR
Sbjct: 11  KIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 70

Query: 148 LGLVPIRVDPRL-FKYS------DKDAPNENNTIVFRLHACCERGKPRLTVTSKAL-TWL 207
           LGL+P+  +  +  ++S      D D   E  ++ FRL + C   +  L VTS+ L +  
Sbjct: 71  LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQ-TLDVTSRDLYSAD 130

Query: 208 PNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPIGPKDSDIILARLGPGQEIE 267
           P  +      D SVS+S                          +   II+ +L  GQE++
Sbjct: 131 PTVTPVDFTIDSSVSDSS-------------------------EHKGIIIVKLRRGQELK 190

Query: 268 LEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEEELAEE----LEKKCPVNVFDIE 327
           L A A KG+GK HAKWSP AT  +   P++++ E++ + L++E    L +  P  VF ++
Sbjct: 191 LRAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMD 250

Query: 328 DIAGKKRATVARPRDCTLCRECI-RGDAWEK--RVALRRVKDHFIFKIESTGALPPEVLF 385
            +   ++  V  P   T   E I + +A  K   + +    D FIF +ESTGA+    L 
Sbjct: 251 PVT--RQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLV 294

The following BLAST results are available for this feature:

BLAST of Chy6G124250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q32L22	9.3e-79	45.18	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus OX=9913 GN=PO...	[more]
O15160	1.3e-77	44.35	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens OX=9606 GN=...	[more]
P52432	1.1e-76	46.57	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus OX=10090 GN...	[more]
Q54SN4	3.8e-72	42.33	DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum...	[more]
O94616	7.6e-65	39.34	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pomb...	[more]

BLAST of Chy6G124250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L637	9.3e-223	98.98	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis sativus OX=3659 ...	[more]
A0A1S4DX61	2.3e-205	92.86	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1FDA3	4.8e-203	91.33	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita moschata OX=36...	[more]
A0A6J1L269	3.1e-202	91.07	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1DXI7	2.0e-193	90.05	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3...	[more]

BLAST of Chy6G124250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148257.1	6.89e-282	98.98	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucumis sativus] >KGN56027...	[more]
XP_038903474.1	9.50e-266	94.88	DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispi...	[more]
XP_008449040.1	5.00e-259	92.86	PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Cucumis melo] >...	[more]
XP_022936430.1	5.58e-256	91.33	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata] >XP_02...	[more]
XP_023540473.1	1.12e-255	91.33	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita pepo subsp. pepo...	[more]

BLAST of Chy6G124250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60620.1	1.8e-138	67.76	RNA polymerase I subunit 43	[more]
AT1G60850.2	3.8e-128	64.82	DNA-directed RNA polymerase family protein	[more]
AT1G60850.1	3.8e-128	64.82	DNA-directed RNA polymerase family protein	[more]
AT1G60850.3	5.4e-90	63.50	DNA-directed RNA polymerase family protein	[more]
AT2G15430.1	3.9e-32	31.73	DNA-directed RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 98..389 e-value: 6.1E-109 score: 377.9
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	PFAM	PF01193	RNA_pol_L	coord: 100..383 e-value: 3.5E-26 score: 91.7
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 89..382 e-value: 3.1E-105 score: 353.5
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 85..390
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	GENE3D	2.170.120.12		coord: 124..273 e-value: 3.1E-105 score: 353.5
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 123..277
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 131..276 e-value: 3.7E-22 score: 78.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR11800:SF14	BNAA01G22480D PROTEIN	coord: 23..391
None	No IPR available	PANTHER	PTHR11800	DNA-DIRECTED RNA POLYMERASE	coord: 23..391
IPR001514	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	PROSITE	PS00446	RNA_POL_D_30KD	coord: 112..152
IPR007110	Immunoglobulin-like domain	PROSITE	PS50835	IG_LIKE	coord: 157..236 score: 6.542007
IPR033901	DNA-directed RNA polymerases I and III subunit AC40	CDD	cd07032	RNAP_I_II_AC40	coord: 87..389 e-value: 3.31234E-142 score: 404.284

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G124250.1	Chy6G124250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006360	transcription by RNA polymerase I
biological_process	GO:0006383	transcription by RNA polymerase III
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001054	RNA polymerase I activity
molecular_function	GO:0001056	RNA polymerase III activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity