Chy6G124210 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G124210
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	RPM1-interacting protein 4-like
Location	chrH06: 22795344 .. 22795574 (+)
RNA-Seq Expression	Chy6G124210
Synteny	Chy6G124210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAAGGGTCAGCCATTGCCGAAGTTTGGTGAATGGGATGTTAATAATCCTGCTTCTGCAGAGGGCTTCACCGTGATATTTAATAAGGCAAGAGATGAGAAGAAAACCGGTGGCCAACCTGAATCACCTGGAAAGGCACCTCGGGCTAAAAATGTAGCAGATCCTGGCAAACCTCAGGCTGTAAGATGCTATGGACATAATTTTTTTCCTTGCCTTGTTTATCATGCTTGA

mRNA sequence

GAGAAGGGTCAGCCATTGCCGAAGTTTGGTGAATGGGATGTTAATAATCCTGCTTCTGCAGAGGGCTTCACCGTGATATTTAATAAGGCAAGAGATGAGAAGAAAACCGGTGGCCAACCTGAATCACCTGGAAAGGCACCTCGGGCTAAAAATGTAGCAGATCCTGGCAAACCTCAGGCTGTAAGATGCTATGGACATAATTTTTTTCCTTGCCTTGTTTATCATGCTTGA

Coding sequence (CDS)

GAGAAGGGTCAGCCATTGCCGAAGTTTGGTGAATGGGATGTTAATAATCCTGCTTCTGCAGAGGGCTTCACCGTGATATTTAATAAGGCAAGAGATGAGAAGAAAACCGGTGGCCAACCTGAATCACCTGGAAAGGCACCTCGGGCTAAAAATGTAGCAGATCCTGGCAAACCTCAGGCTGTAAGATGCTATGGACATAATTTTTTTCCTTGCCTTGTTTATCATGCTTGA

Protein sequence

EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRAKNVADPGKPQAVRCYGHNFFPCLVYHA*

Homology

[Close]

BLAST of Chy6G124210 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-18
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 1  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRA---KNVADPGK 60
          +KG+PLPKFGEWDVN+PASAEGFTVIFNKARDEKKTGG+P SPGK+          DP K
Sbjct: 3  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSK 62

[Close]

BLAST of Chy6G124210 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.4e-09
Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 1   EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRAKNVADPGKPQA 60
           EK   +PKFG+WD NNP+SA+G+T IFNK R+E+ +G       + P  ++  +P    +
Sbjct: 143 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPTHQSSRNPNNTSS 202

Query: 61  VRCYG 66
             C+G
Sbjct: 203 CCCFG 207

[Close]

BLAST of Chy6G124210 vs. ExPASy TrEMBL
Match: A0A0A0L7F7 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G047910 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRAKNVADPGKPQA 60
          EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRAKNVADPGKPQA
Sbjct: 3  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRAKNVADPGKPQA 62

Query: 61 VRCY 65
           + +
Sbjct: 63 KKWF 66

[Close]

BLAST of Chy6G124210 vs. ExPASy TrEMBL
Match: A0A5D3CRF8 (RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00290 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.4e-26
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRAKNVADPGKPQA 60
          EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAP+AKNVADPGKPQA
Sbjct: 2  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKPQA 61

Query: 61 VR 63
           R
Sbjct: 62 DR 63

[Close]

BLAST of Chy6G124210 vs. ExPASy TrEMBL
Match: A0A1S3BL66 (RPM1-interacting protein 4-like OS=Cucumis melo OX=3656 GN=LOC103491035 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.2e-26
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRAKNVADPGKPQA 60
          EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAP+AKNVADPGKPQA
Sbjct: 3  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKPQA 62

Query: 61 VRCY 65
           + +
Sbjct: 63 KKWF 66

[Close]

BLAST of Chy6G124210 vs. ExPASy TrEMBL
Match: A0A6J1GG65 (RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111453626 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.3e-23
Identity = 54/64 (84.38%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 1  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRAKNVADPGKPQA 60
          EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKK+GGQPESPG AP+AK  ADP KPQA
Sbjct: 26 EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQA 85

Query: 61 VRCY 65
           + +
Sbjct: 86 KKWF 89

[Close]

BLAST of Chy6G124210 vs. ExPASy TrEMBL
Match: A0A445JND3 (Protein NOI4 isoform B OS=Glycine soja OX=3848 GN=D0Y65_022390 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.6e-20
Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 1  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKA---PRAKNVADPGK 60
          EKG+PLPKFGEWDVN+PASAEGFTVIFNKARDEKKTGG PESPGK    P +K   +PGK
Sbjct: 3  EKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGNPESPGKTATDPHSKPAVEPGK 62

Query: 61 PQAVRC 64
           Q VRC
Sbjct: 63 TQTVRC 68

[Close]

BLAST of Chy6G124210 vs. NCBI nr
Match: XP_004148258.1 (protein NOI4 [Cucumis sativus] >KGN56031.1 hypothetical protein Csa_009963 [Cucumis sativus])

HSP 1 Score: 130 bits (326), Expect = 1.58e-37
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRAKNVADPGKPQA 60
          EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRAKNVADPGKPQA
Sbjct: 3  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRAKNVADPGKPQA 62

Query: 61 VRCY 64
           + +
Sbjct: 63 KKWF 66

[Close]

BLAST of Chy6G124210 vs. NCBI nr
Match: KAA0065744.1 (RPM1-interacting protein 4-like [Cucumis melo var. makuwa] >TYK13768.1 RPM1-interacting protein 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (323), Expect = 3.53e-37
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRAKNVADPGKPQA 60
          EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAP+AKNVADPGKPQA
Sbjct: 2  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKPQA 61

Query: 61 VR 62
           R
Sbjct: 62 DR 63

[Close]

BLAST of Chy6G124210 vs. NCBI nr
Match: XP_008449047.1 (PREDICTED: RPM1-interacting protein 4-like [Cucumis melo])

HSP 1 Score: 128 bits (322), Expect = 6.44e-37
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRAKNVADPGKPQA 60
          EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAP+AKNVADPGKPQA
Sbjct: 3  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKPQA 62

Query: 61 VRCY 64
           + +
Sbjct: 63 KKWF 66

[Close]

BLAST of Chy6G124210 vs. NCBI nr
Match: KAG7028294.1 (RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128 bits (322), Expect = 1.38e-36
Identity = 60/74 (81.08%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRAKNVADPGKPQA 60
          EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKK+GGQPESPG AP+AK  ADP KPQA
Sbjct: 3  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKPQA 62

Query: 61 VRCYGHNF-FPCLV 73
          VRC+   F + CL+
Sbjct: 63 VRCFERIFMYNCLL 76

[Close]

BLAST of Chy6G124210 vs. NCBI nr
Match: XP_038905925.1 (protein NOI4-like [Benincasa hispida])

HSP 1 Score: 125 bits (313), Expect = 1.48e-35
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRAKNVADPGKPQA 60
          EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAP+AK+ ADPGKPQA
Sbjct: 3  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKHAADPGKPQA 62

Query: 61 VRCY 64
           + +
Sbjct: 63 KKWF 66

[Close]

BLAST of Chy6G124210 vs. TAIR 10
Match: AT5G55850.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-20
Identity = 46/65 (70.77%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRA---KNVADPGK 60
          +KG+PLPKFGEWDVN+PASAEGFTVIFNKARDEKKTGG+P SPGK+          DP K
Sbjct: 3  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSK 62

Query: 61 PQAVR 63
          PQ V+
Sbjct: 63 PQPVK 67

[Close]

BLAST of Chy6G124210 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-20
Identity = 46/65 (70.77%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRA---KNVADPGK 60
          +KG+PLPKFGEWDVN+PASAEGFTVIFNKARDEKKTGG+P SPGK+          DP K
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSK 78

Query: 61 PQAVR 63
          PQ V+
Sbjct: 79 PQPVK 83

[Close]

BLAST of Chy6G124210 vs. TAIR 10
Match: AT5G55850.3 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 93.6 bits (231), Expect = 7.5e-20
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 1  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRA---KNVADPGK 60
          +KG+PLPKFGEWDVN+PASAEGFTVIFNKARDEKKTGG+P SPGK+          DP K
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSK 78

[Close]

BLAST of Chy6G124210 vs. TAIR 10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-16
Identity = 36/45 (80.00%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 1  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGK 46
          +KG+PLPKFGEWDVN+P+SAEGFTVIFNKAR+EKK GG+ +SPGK
Sbjct: 3  DKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGK 47

[Close]

BLAST of Chy6G124210 vs. TAIR 10
Match: AT5G63270.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 71.2 bits (173), Expect = 4.0e-13
Identity = 37/54 (68.52%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 2  KGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKT----GGQPESPGKAPRAKN 52
          KG+PLPKFGEWDVNNPASAEGFTVIF+KA DEKKT    G  P S     R +N
Sbjct: 5  KGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQN 58

The following BLAST results are available for this feature:

BLAST of Chy6G124210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22633	1.1e-18	72.58	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1	[more]
Q8GYN5	3.4e-09	40.00	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]

BLAST of Chy6G124210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7F7	1.1e-26	93.75	AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G04...	[more]
A0A5D3CRF8	2.4e-26	96.77	RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BL66	3.2e-26	92.19	RPM1-interacting protein 4-like OS=Cucumis melo OX=3656 GN=LOC103491035 PE=4 SV=...	[more]
A0A6J1GG65	3.3e-23	84.38	RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111453626 PE...	[more]
A0A445JND3	2.6e-20	77.27	Protein NOI4 isoform B OS=Glycine soja OX=3848 GN=D0Y65_022390 PE=4 SV=1	[more]

BLAST of Chy6G124210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148258.1	1.58e-37	93.75	protein NOI4 [Cucumis sativus] >KGN56031.1 hypothetical protein Csa_009963 [Cucu...	[more]
KAA0065744.1	3.53e-37	96.77	RPM1-interacting protein 4-like [Cucumis melo var. makuwa] >TYK13768.1 RPM1-inte...	[more]
XP_008449047.1	6.44e-37	92.19	PREDICTED: RPM1-interacting protein 4-like [Cucumis melo]	[more]
KAG7028294.1	1.38e-36	81.08	RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038905925.1	1.48e-35	89.06	protein NOI4-like [Benincasa hispida]	[more]

BLAST of Chy6G124210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55850.1	1.5e-20	70.77	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	1.5e-20	70.77	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.3	7.5e-20	72.58	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT2G04410.1	2.3e-16	80.00	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G63270.1	4.0e-13	68.52	RPM1-interacting protein 4 (RIN4) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 1..36 e-value: 1.8E-23 score: 81.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..56
None	No IPR available	PANTHER	PTHR33159:SF59	RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE SITE-RELATED	coord: 1..65
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G124210.1	Chy6G124210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane