Chy6G124060 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G124060
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	A2L_zn_ribbon domain-containing protein
Location	chrH06: 22653541 .. 22654694 (-)
RNA-Seq Expression	Chy6G124060
Synteny	Chy6G124060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCCTTAGTTTCCAACCCTCTTATTTCCCATCCCACTCTTCCTCCTTCCACTACTTTTTCCCTCAAACCCCGCTCCATTTCGATCCATAATCGGAGACGAACACCCGCGTTTGCTGCCATTGACGGTGCTTCTTTGCTTCCAGCTGACTCCACTCAGGTTGAAATCACATGGCAAATTTTCGTTGGAGCGATTGGTAACTGCAATTATTTATTATTATTATTATTATTATTTCTGTTGTTTCTTTTGATACGTTTTGTATCATCTATATCTGATCCGTTTTGATATTGGTTGTAGCTGGAGTGACGCCGTTTGTGGTGGCCGGAATCGAATTCAGCAAGAGAATTGTGAGTTTTTTTTTTTTTTGGGACTTTTTCAAGTGATTTGTTGTCTGTTGTTTTCTTATCTTTATTGGAATTTAAAACTGTAGATGGCCCAAAAGAGATGTAAAGAATGTGGTGGTTCGGGGCTTGTTCTTAGTGATGATGACTACTTTCGTTGCCCTGAATGTGGTAATAGTTCTTTTTTGTTGTTAATCATTATGTTGAATTGAAAAAGGTGTTGTTAATGAAAATTTGTGGAACAAAATCATAACAATTATGAAATTCATAGACAATATTCAAATGAGCAAATAAGTTTTTGTTTTTCTTTCCCTTTTAAATAAGTTAAAAGTACTTGTTACTATTAATATGTTCATATTTTTTATATTATGTCATAATGGATATGTCAATTCACTTTGAATCTATGTCGTTCATAGAGAAATGTCAACATGGCCATAACTATACCTTGCTTATATTGAGGCAAGATGCTGATTCCCAAAACTTTAAAACATTTATAAAAGTTTGGACTTTTTAATTTTAAACGGCCTGTTTCATCTTATGTTAAGTATAGTTTCATGGCTTGTAAGCTTGTTATTAATCAATCATTATGGTAAAGCACTAAACTGAGAATTCTTAACCTATAATTATTAAATTAGAAACAAGTTCTTATAAAAAGCATATAAATAGTTAGCCGTAATGTTCCAACAGTATAGTTCGGAAAGGAAAAAAGAAAAATTATGACTGTGAGCTCCTTCCTTGTTCTTGACATTTATCGGTTGGACAGGTGGTTTTTTGCCATGGCAGTCATGGAGGCGATTCTTTTGGGGATAA

mRNA sequence

ATGGAAGCCTTAGTTTCCAACCCTCTTATTTCCCATCCCACTCTTCCTCCTTCCACTACTTTTTCCCTCAAACCCCGCTCCATTTCGATCCATAATCGGAGACGAACACCCGCGTTTGCTGCCATTGACGGTGCTTCTTTGCTTCCAGCTGACTCCACTCAGGTTGAAATCACATGGCAAATTTTCGTTGGAGCGATTGCTGGAGTGACGCCGTTTGTGGTGGCCGGAATCGAATTCAGCAAGAGAATTATGGCCCAAAAGAGATGTAAAGAATGTGGTGGTTCGGGGCTTGTTCTTAGTGATGATGACTACTTTCGTTGCCCTGAATGTGGTGGTTTTTTGCCATGGCAGTCATGGAGGCGATTCTTTTGGGGATAA

Coding sequence (CDS)

ATGGAAGCCTTAGTTTCCAACCCTCTTATTTCCCATCCCACTCTTCCTCCTTCCACTACTTTTTCCCTCAAACCCCGCTCCATTTCGATCCATAATCGGAGACGAACACCCGCGTTTGCTGCCATTGACGGTGCTTCTTTGCTTCCAGCTGACTCCACTCAGGTTGAAATCACATGGCAAATTTTCGTTGGAGCGATTGCTGGAGTGACGCCGTTTGTGGTGGCCGGAATCGAATTCAGCAAGAGAATTATGGCCCAAAAGAGATGTAAAGAATGTGGTGGTTCGGGGCTTGTTCTTAGTGATGATGACTACTTTCGTTGCCCTGAATGTGGTGGTTTTTTGCCATGGCAGTCATGGAGGCGATTCTTTTGGGGATAA

Protein sequence

MEALVSNPLISHPTLPPSTTFSLKPRSISIHNRRRTPAFAAIDGASLLPADSTQVEITWQIFVGAIAGVTPFVVAGIEFSKRIMAQKRCKECGGSGLVLSDDDYFRCPECGGFLPWQSWRRFFWG*

Homology

[Close]

BLAST of Chy6G124060 vs. ExPASy TrEMBL
Match: A0A0A0L7H1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061530 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 5.3e-63
Identity = 118/125 (94.40%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MEALVSNPLISHPTLPPSTTFSLKPRSISIHNRRRTPAFAAIDGASLLPADSTQVEITWQ 60
           MEALVSNPLI+HPTLPPSTTF LKPRS SIHNRRRTPAFAAIDGASLLPADSTQV+ITWQ
Sbjct: 1   MEALVSNPLITHPTLPPSTTFPLKPRSNSIHNRRRTPAFAAIDGASLLPADSTQVQITWQ 60

Query: 61  IFVGAIAGVTPFVVAGIEFSKRIMAQKRCKECGGSGLVLSDDDYFRCPECGGFLPWQSWR 120
           IFVGAIAGVTPFVVAGIEFSKRI  QKRCKECGGSGLVL DDDYFRCPECGGFLPWQSWR
Sbjct: 61  IFVGAIAGVTPFVVAGIEFSKRIRVQKRCKECGGSGLVLRDDDYFRCPECGGFLPWQSWR 120

Query: 121 RFFWG 126
           RFFWG
Sbjct: 121 RFFWG 125

[Close]

BLAST of Chy6G124060 vs. ExPASy TrEMBL
Match: A0A1S3BLU9 (uncharacterized protein LOC103491051 OS=Cucumis melo OX=3656 GN=LOC103491051 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.8e-56
Identity = 110/125 (88.00%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MEALVSNPLISHPTLPPSTTFSLKPRSISIHNRRRTPAFAAIDGASLLPADSTQVEITWQ 60
           MEAL+SNPLI+HPTL  S     KPRS S+HNRRRTPAFAAIDGAS L ADSTQVEITWQ
Sbjct: 1   MEALISNPLITHPTLRRS-----KPRSNSMHNRRRTPAFAAIDGASSLAADSTQVEITWQ 60

Query: 61  IFVGAIAGVTPFVVAGIEFSKRIMAQKRCKECGGSGLVLSDDDYFRCPECGGFLPWQSWR 120
           IFVGAIAGVTPFVVAGIEFSKRIMAQKRCKECGGSGLVL DDDYFRCP+CGGFLPWQSWR
Sbjct: 61  IFVGAIAGVTPFVVAGIEFSKRIMAQKRCKECGGSGLVLRDDDYFRCPDCGGFLPWQSWR 120

Query: 121 RFFWG 126
           RFFWG
Sbjct: 121 RFFWG 120

[Close]

BLAST of Chy6G124060 vs. ExPASy TrEMBL
Match: A0A6J1L2M2 (uncharacterized protein LOC111498537 OS=Cucurbita maxima OX=3661 GN=LOC111498537 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.8e-42
Identity = 90/111 (81.08%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 17  PSTTFSLKPRSISIHNRRRTPAFAAIDGASL--LPADSTQVEITWQIFVGAIAGVTPFVV 76
           P + F L  RS S++ RRRTP FAAIDGASL    AD TQVEITWQI VGAIAGVTPFVV
Sbjct: 24  PVSPFPLNLRSNSLNKRRRTPTFAAIDGASLAAAAADPTQVEITWQIVVGAIAGVTPFVV 83

Query: 77  AGIEFSKRIMAQKRCKECGGSGLVLSDDDYFRCPECGGFLPWQSWRRFFWG 126
           AGIEFSKRI+AQKRCKECGGSGLVL D DYFRCPECGGFLPWQSWRRFF G
Sbjct: 84  AGIEFSKRIVAQKRCKECGGSGLVLMDKDYFRCPECGGFLPWQSWRRFFSG 134

[Close]

BLAST of Chy6G124060 vs. ExPASy TrEMBL
Match: A0A6J1FBA7 (uncharacterized protein LOC111442262 OS=Cucurbita moschata OX=3662 GN=LOC111442262 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.3e-42
Identity = 97/134 (72.39%), Postives = 104/134 (77.61%), Query Frame = 0


Query: 1   MEALV---SNPLISHPTL----PPSTTFSLKPRSISIHNRRRTPAFAAIDGASL--LPAD 60
           MEAL+   ++P    PT      P + F L  RS S++ RRRTP FAAIDGASL    AD
Sbjct: 1   MEALLPISTSPFRFPPTANTSPRPVSPFPLNLRSNSLNKRRRTPTFAAIDGASLAAAAAD 60

Query: 61  STQVEITWQIFVGAIAGVTPFVVAGIEFSKRIMAQKRCKECGGSGLVLSDDDYFRCPECG 120
            TQVEITWQI VGAIAGVTPFVVAGIEFSKRI+AQKRCKECGGSGLVL D DYFRCPECG
Sbjct: 61  PTQVEITWQIVVGAIAGVTPFVVAGIEFSKRIVAQKRCKECGGSGLVLMDKDYFRCPECG 120

Query: 121 GFLPWQSWRRFFWG 126
           GFLPWQSWRRFF G
Sbjct: 121 GFLPWQSWRRFFSG 134

[Close]

BLAST of Chy6G124060 vs. ExPASy TrEMBL
Match: A0A6J1DN65 (uncharacterized protein LOC111022135 OS=Momordica charantia OX=3673 GN=LOC111022135 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.6e-35
Identity = 74/98 (75.51%), Postives = 84/98 (85.71%), Query Frame = 0


Query: 29  SIHNRRRTPAFAAI-DGASLLPADSTQVEITWQIFVGAIAGVTPFVVAGIEFSKRIMAQK 88
           SI NRR     AAI D AS   AD +Q++ITWQI VGAIAGVTPFVVAGIEF+KRI+AQ+
Sbjct: 20  SIPNRRPKTTIAAINDAASQQQADPSQLQITWQIAVGAIAGVTPFVVAGIEFTKRIVAQQ 79

Query: 89  RCKECGGSGLVLSDDDYFRCPECGGFLPWQSWRRFFWG 126
           RC+ECGGSGLVL +DDYFRCP+CGGFLPWQSW+RFFWG
Sbjct: 80  RCEECGGSGLVLMEDDYFRCPQCGGFLPWQSWKRFFWG 117

[Close]

BLAST of Chy6G124060 vs. NCBI nr
Match: XP_004149576.1 (uncharacterized protein LOC101220311 [Cucumis sativus] >KGN56051.1 hypothetical protein Csa_011367 [Cucumis sativus])

HSP 1 Score: 249 bits (637), Expect = 1.98e-83
Identity = 118/125 (94.40%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MEALVSNPLISHPTLPPSTTFSLKPRSISIHNRRRTPAFAAIDGASLLPADSTQVEITWQ 60
           MEALVSNPLI+HPTLPPSTTF LKPRS SIHNRRRTPAFAAIDGASLLPADSTQV+ITWQ
Sbjct: 1   MEALVSNPLITHPTLPPSTTFPLKPRSNSIHNRRRTPAFAAIDGASLLPADSTQVQITWQ 60

Query: 61  IFVGAIAGVTPFVVAGIEFSKRIMAQKRCKECGGSGLVLSDDDYFRCPECGGFLPWQSWR 120
           IFVGAIAGVTPFVVAGIEFSKRI  QKRCKECGGSGLVL DDDYFRCPECGGFLPWQSWR
Sbjct: 61  IFVGAIAGVTPFVVAGIEFSKRIRVQKRCKECGGSGLVLRDDDYFRCPECGGFLPWQSWR 120

Query: 121 RFFWG 125
           RFFWG
Sbjct: 121 RFFWG 125

[Close]

BLAST of Chy6G124060 vs. NCBI nr
Match: XP_008449071.1 (PREDICTED: uncharacterized protein LOC103491051 [Cucumis melo])

HSP 1 Score: 226 bits (576), Expect = 3.38e-74
Identity = 110/125 (88.00%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MEALVSNPLISHPTLPPSTTFSLKPRSISIHNRRRTPAFAAIDGASLLPADSTQVEITWQ 60
           MEAL+SNPLI+HPTL  S     KPRS S+HNRRRTPAFAAIDGAS L ADSTQVEITWQ
Sbjct: 1   MEALISNPLITHPTLRRS-----KPRSNSMHNRRRTPAFAAIDGASSLAADSTQVEITWQ 60

Query: 61  IFVGAIAGVTPFVVAGIEFSKRIMAQKRCKECGGSGLVLSDDDYFRCPECGGFLPWQSWR 120
           IFVGAIAGVTPFVVAGIEFSKRIMAQKRCKECGGSGLVL DDDYFRCP+CGGFLPWQSWR
Sbjct: 61  IFVGAIAGVTPFVVAGIEFSKRIMAQKRCKECGGSGLVLRDDDYFRCPDCGGFLPWQSWR 120

Query: 121 RFFWG 125
           RFFWG
Sbjct: 121 RFFWG 120

[Close]

BLAST of Chy6G124060 vs. NCBI nr
Match: XP_038903334.1 (uncharacterized protein LOC120089955 [Benincasa hispida])

HSP 1 Score: 205 bits (521), Expect = 9.70e-66
Identity = 106/127 (83.46%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 1   MEALVSNPLISHPTLP--PSTTFSLKPRSISIHNRRRTPAFAAIDGASLLPADSTQVEIT 60
           MEAL   P IS+P  P   S+TF LKPRS SI NRRRT  +AAIDGASL  ADS QVEIT
Sbjct: 1   MEALPLPP-ISNPLFPFRRSSTFPLKPRSNSIQNRRRTATYAAIDGASLT-ADSIQVEIT 60

Query: 61  WQIFVGAIAGVTPFVVAGIEFSKRIMAQKRCKECGGSGLVLSDDDYFRCPECGGFLPWQS 120
           WQIFVGAIAGVTPFVVAGIEFSKRIMAQKRCKECGGSGLVL DDDYFRCPECGGFLPWQS
Sbjct: 61  WQIFVGAIAGVTPFVVAGIEFSKRIMAQKRCKECGGSGLVLRDDDYFRCPECGGFLPWQS 120

Query: 121 WRRFFWG 125
           WRRFFWG
Sbjct: 121 WRRFFWG 125

[Close]

BLAST of Chy6G124060 vs. NCBI nr
Match: XP_023005598.1 (uncharacterized protein LOC111498537 [Cucurbita maxima] >XP_023005599.1 uncharacterized protein LOC111498537 [Cucurbita maxima])

HSP 1 Score: 181 bits (460), Expect = 2.56e-56
Identity = 90/111 (81.08%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 17  PSTTFSLKPRSISIHNRRRTPAFAAIDGASLLPA--DSTQVEITWQIFVGAIAGVTPFVV 76
           P + F L  RS S++ RRRTP FAAIDGASL  A  D TQVEITWQI VGAIAGVTPFVV
Sbjct: 24  PVSPFPLNLRSNSLNKRRRTPTFAAIDGASLAAAAADPTQVEITWQIVVGAIAGVTPFVV 83

Query: 77  AGIEFSKRIMAQKRCKECGGSGLVLSDDDYFRCPECGGFLPWQSWRRFFWG 125
           AGIEFSKRI+AQKRCKECGGSGLVL D DYFRCPECGGFLPWQSWRRFF G
Sbjct: 84  AGIEFSKRIVAQKRCKECGGSGLVLMDKDYFRCPECGGFLPWQSWRRFFSG 134

[Close]

BLAST of Chy6G124060 vs. NCBI nr
Match: XP_022935718.1 (uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_022936477.1 uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_022937262.1 uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_022937933.1 uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_022938581.1 uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_023540549.1 uncharacterized protein LOC111800877 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181 bits (460), Expect = 2.56e-56
Identity = 90/111 (81.08%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 17  PSTTFSLKPRSISIHNRRRTPAFAAIDGASLLPA--DSTQVEITWQIFVGAIAGVTPFVV 76
           P + F L  RS S++ RRRTP FAAIDGASL  A  D TQVEITWQI VGAIAGVTPFVV
Sbjct: 24  PVSPFPLNLRSNSLNKRRRTPTFAAIDGASLAAAAADPTQVEITWQIVVGAIAGVTPFVV 83

Query: 77  AGIEFSKRIMAQKRCKECGGSGLVLSDDDYFRCPECGGFLPWQSWRRFFWG 125
           AGIEFSKRI+AQKRCKECGGSGLVL D DYFRCPECGGFLPWQSWRRFF G
Sbjct: 84  AGIEFSKRIVAQKRCKECGGSGLVLMDKDYFRCPECGGFLPWQSWRRFFSG 134

[Close]

BLAST of Chy6G124060 vs. TAIR 10
Match: AT5G55570.1 (unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 135.6 bits (340), Expect = 2.8e-32
Identity = 61/94 (64.89%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 32  NRRRTPAFAAIDGASLLPADSTQVEITWQIFVGAIAGVTPFVVAGIEFSKRIMAQKRCKE 91
           + RR    +A+   +   A++ + EITWQI VG IAG+ PFVVAG+EFSKRI+AQKRC+E
Sbjct: 50  SNRRLKTTSALSELADTVAETGKSEITWQIIVGTIAGIIPFVVAGVEFSKRIIAQKRCEE 109

Query: 92  CGGSGLVLSDDDYFRCPECGGFLPWQSWRRFFWG 126
           CGG+GLV  D  YFRCPECGGFLPWQSWRRFF G
Sbjct: 110 CGGTGLVSRDKKYFRCPECGGFLPWQSWRRFFTG 143

The following BLAST results are available for this feature:

BLAST of Chy6G124060 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G124060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7H1	5.3e-63	94.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061530 PE=4 SV=1	[more]
A0A1S3BLU9	4.8e-56	88.00	uncharacterized protein LOC103491051 OS=Cucumis melo OX=3656 GN=LOC103491051 PE=...	[more]
A0A6J1L2M2	1.8e-42	81.08	uncharacterized protein LOC111498537 OS=Cucurbita maxima OX=3661 GN=LOC111498537...	[more]
A0A6J1FBA7	2.3e-42	72.39	uncharacterized protein LOC111442262 OS=Cucurbita moschata OX=3662 GN=LOC1114422...	[more]
A0A6J1DN65	1.6e-35	75.51	uncharacterized protein LOC111022135 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Chy6G124060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149576.1	1.98e-83	94.40	uncharacterized protein LOC101220311 [Cucumis sativus] >KGN56051.1 hypothetical ...	[more]
XP_008449071.1	3.38e-74	88.00	PREDICTED: uncharacterized protein LOC103491051 [Cucumis melo]	[more]
XP_038903334.1	9.70e-66	83.46	uncharacterized protein LOC120089955 [Benincasa hispida]	[more]
XP_023005598.1	2.56e-56	81.08	uncharacterized protein LOC111498537 [Cucurbita maxima] >XP_023005599.1 uncharac...	[more]
XP_022935718.1	2.56e-56	81.08	uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_022936477.1 unchar...	[more]

BLAST of Chy6G124060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55570.1	2.8e-32	64.89	unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014900	Viral late gene transcription factor 3 , zinc ribbon	PFAM	PF08792	A2L_zn_ribbon	coord: 84..111 e-value: 7.3E-6 score: 25.5
None	No IPR available	PANTHER	PTHR36809	TRANSMEMBRANE PROTEIN	coord: 26..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G124060.1	Chy6G124060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane