Chy6G122950 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G122950
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Retrovirus-related pol polyprotein from transposon tnt 1-94
Location	chrH06: 20845430 .. 20846305 (-)
RNA-Seq Expression	Chy6G122950
Synteny	Chy6G122950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAGGTGTTTGAGATGACTGATCTAGATTTGATGTATTACTTCCTAGGAATGGAGATTCAGCAAACACAGAATGAAATATTCCTTTGTCAGAAGAAGTATGTAAGAGAGATATTGAGGAGGTTCAATATGGAGGAGTGTAAAAGTGTGAACACTCCAATGATTCAGAAGGAGAAGTTGGAAAAGAAAGATGGGGAGGAACCTGCGGATGAAAATGTGTATAGACGTCTAGTTGGATGCCTCATGTATCTCACATCCACTAGACCTGACATTATATACACTGCAAGTGTCTTATCTAGATTTCTTCACTTTTCAAGCAAGAATCATATGGTTGCTGGAAAAAGGGTCCTGAGATATCTGAAAGGCACACTGTCTCTTGCGATCAAATTTAGCAAAGTTGAAAATTTTGAGTTGAAAGGCTACTCAGATAGTGATTGGGGCCAGGTCATTGGATGATATGAAGAGCACCTCTGGTTATTGTTTCACCTTTGGCTCAGGATGTTTCACGTGGTGTTAAAAAAACAAGTTATAGTGGCTCAGTCAACTGCAGAAGTCAAGTTCATTGCAACAACGGCAACAGTCAACCAAGCTGTTTGGTTGAAGAAATTGATGCATGACTTGTATCTGAAGCAGGAAGAGAGTGTGAAGGTGTTTGTGGATATCACTCTAACCATTTCATTGAATCCAGTTTTTCATGGAAGGGCCAAACATTTTAAGATCAAGTATTACGTTCTAAGAGAGATGCAAAAGGAAGGAGAAGTGCAACTGGTGCAATGTAGCTCAGAAGAACAAGTAGCAAATATCTTCACTAAGTCTTTTTGTATGGGTCGTTTTCAAGCTCTTAGAAGCAAGTTAGGTGTTTACAGTATTTGA

mRNA sequence

ATGATGAAGGTGTTTGAGATGACTGATCTAGATTTGATGTATTACTTCCTAGGAATGGAGATTCAGCAAACACAGAATGAAATATTCCTTTGTCAGAAGAAGTATGTAAGAGAGATATTGAGGAGGTTCAATATGGAGGAGTGTAAAAGTGTGAACACTCCAATGATTCAGAAGGAGAAGTTGGAAAAGAAAGATGGGGAGGAACCTGCGGATGAAAATGTGTATAGACGTCTAGTTGGATGCCTCATGTATCTCACATCCACTAGACCTGACATTATATACACTGCAAGTGTCTTATCTAGATTTCTTCACTTTTCAAGCAAGAATCATATGGTTGCTGGAAAAAGGGTCCTGAGATATCTGAAAGGCACACTGTCTCTTGCGATCAAATTTAGCAAAGTTGAAAATTTTGAGTTGAAAGGCTACTCAGATAGTGATTGGGGCCAGTCAACTGCAGAAGTCAAGTTCATTGCAACAACGGCAACAGTCAACCAAGCTGTTTGGTTGAAGAAATTGATGCATGACTTGTATCTGAAGCAGGAAGAGAGTGTGAAGGTGTTTGTGGATATCACTCTAACCATTTCATTGAATCCAGTTTTTCATGGAAGGGCCAAACATTTTAAGATCAAGTATTACGTTCTAAGAGAGATGCAAAAGGAAGGAGAAGTGCAACTGGTGCAATGTAGCTCAGAAGAACAAGTAGCAAATATCTTCACTAAGTCTTTTTGTATGGGTCGTTTTCAAGCTCTTAGAAGCAAGTTAGGTGTTTACAGTATTTGA

Coding sequence (CDS)

ATGATGAAGGTGTTTGAGATGACTGATCTAGATTTGATGTATTACTTCCTAGGAATGGAGATTCAGCAAACACAGAATGAAATATTCCTTTGTCAGAAGAAGTATGTAAGAGAGATATTGAGGAGGTTCAATATGGAGGAGTGTAAAAGTGTGAACACTCCAATGATTCAGAAGGAGAAGTTGGAAAAGAAAGATGGGGAGGAACCTGCGGATGAAAATGTGTATAGACGTCTAGTTGGATGCCTCATGTATCTCACATCCACTAGACCTGACATTATATACACTGCAAGTGTCTTATCTAGATTTCTTCACTTTTCAAGCAAGAATCATATGGTTGCTGGAAAAAGGGTCCTGAGATATCTGAAAGGCACACTGTCTCTTGCGATCAAATTTAGCAAAGTTGAAAATTTTGAGTTGAAAGGCTACTCAGATAGTGATTGGGGCCAGTCAACTGCAGAAGTCAAGTTCATTGCAACAACGGCAACAGTCAACCAAGCTGTTTGGTTGAAGAAATTGATGCATGACTTGTATCTGAAGCAGGAAGAGAGTGTGAAGGTGTTTGTGGATATCACTCTAACCATTTCATTGAATCCAGTTTTTCATGGAAGGGCCAAACATTTTAAGATCAAGTATTACGTTCTAAGAGAGATGCAAAAGGAAGGAGAAGTGCAACTGGTGCAATGTAGCTCAGAAGAACAAGTAGCAAATATCTTCACTAAGTCTTTTTGTATGGGTCGTTTTCAAGCTCTTAGAAGCAAGTTAGGTGTTTACAGTATTTGA

Protein sequence

MMKVFEMTDLDLMYYFLGMEIQQTQNEIFLCQKKYVREILRRFNMEECKSVNTPMIQKEKLEKKDGEEPADENVYRRLVGCLMYLTSTRPDIIYTASVLSRFLHFSSKNHMVAGKRVLRYLKGTLSLAIKFSKVENFELKGYSDSDWGQSTAEVKFIATTATVNQAVWLKKLMHDLYLKQEESVKVFVDITLTISLNPVFHGRAKHFKIKYYVLREMQKEGEVQLVQCSSEEQVANIFTKSFCMGRFQALRSKLGVYSI*

Homology

[Close]

BLAST of Chy6G122950 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 163.3 bits (412), Expect = 3.7e-39
Identity = 107/297 (36.03%), Postives = 160/297 (53.87%), Query Frame = 0


Query: 1    MMKVFEMTDLDLMYYFLGMEIQQTQNEIFLCQKKYVREILRRFNMEECKSVNTPMIQKEK 60
            +M+ F MTDL+ + +F+G+ I+  +++I+L Q  YV++IL +FNME C +V+TP+  K  
Sbjct: 1108 LMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKIN 1167

Query: 61   LEKKDGEEPADENVYRRLVGCLMY-LTSTRPDIIYTASVLSRFLHFSSKNHMVAG---KR 120
             E  + +E  +    R L+GCLMY +  TRPD+    ++LSR   +SSKN+       KR
Sbjct: 1168 YELLNSDEDCN-TPCRSLIGCLMYIMLCTRPDLTTAVNILSR---YSSKNNSELWQNLKR 1227

Query: 121  VLRYLKGTLSLAIKFSKVENFELK--GYSDSDW--------------------------- 180
            VLRYLKGT+ + + F K   FE K  GY DSDW                           
Sbjct: 1228 VLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNT 1287

Query: 181  ------GQSTAEVKFIATTATVNQAVWLKKLMHDLYLKQEESVKVFVDI--TLTISLNPV 240
                    S+ E +++A    V +A+WLK L+  + +K E  +K++ D    ++I+ NP 
Sbjct: 1288 KRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPS 1347

Query: 241  FHGRAKHFKIKYYVLREMQKEGEVQLVQCSSEEQVANIFTKSFCMGRFQALRSKLGV 257
             H RAKH  IKY+  RE  +   + L    +E Q+A+IFTK     RF  LR KLG+
Sbjct: 1348 CHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Chy6G122950 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.5e-35
Identity = 89/286 (31.12%), Postives = 139/286 (48.60%), Query Frame = 0


Query: 5    FEMTDLDLMYYFLGMEIQQTQNEIFLCQKKYVREILRRFNMEECKSVNTPMIQKEKLEKK 64
            F + D + ++YFLG+E ++    + L Q++Y+ ++L R NM   K V TPM    KL   
Sbjct: 1175 FSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLY 1234

Query: 65   DGEEPADENVYRRLVGCLMYLTSTRPDIIYTASVLSRFLHFSSKNHMVAGKRVLRYLKGT 124
             G +  D   YR +VG L YL  TRPDI Y  + LS+F+H  ++ H+ A KR+LRYL GT
Sbjct: 1235 SGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGT 1294

Query: 125  LSLAIKFSKVENFELKGYSDSDWG--------------------------------QSTA 184
             +  I   K     L  YSD+DW                                 +S+ 
Sbjct: 1295 PNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSST 1354

Query: 185  EVKFIATTATVNQAVWLKKLMHDLYLKQEESVKVFVDI--TLTISLNPVFHGRAKHFKIK 244
            E ++ +   T ++  W+  L+ +L ++      ++ D      +  NPVFH R KH  I 
Sbjct: 1355 EAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAID 1414

Query: 245  YYVLREMQKEGEVQLVQCSSEEQVANIFTKSFCMGRFQALRSKLGV 257
            Y+ +R   + G +++V  S+ +Q+A+  TK      FQ   SK+GV
Sbjct: 1415 YHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGV 1460

[Close]

BLAST of Chy6G122950 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.5e-32
Identity = 97/301 (32.23%), Postives = 153/301 (50.83%), Query Frame = 0


Query: 1    MMKVFEMTDLDLMYYFLGMEI--QQTQNEIFLCQKKYVREILRRFNMEECKSVNTPMIQK 60
            + K F+M DL      LGM+I  ++T  +++L Q+KY+  +L RFNM+  K V+TP+   
Sbjct: 1029 LSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGH 1088

Query: 61   EKLEKKDGEEPADEN------VYRRLVGCLMY-LTSTRPDIIYTASVLSRFLHFSSKNHM 120
             KL KK      +E        Y   VG LMY +  TRPDI +   V+SRFL    K H 
Sbjct: 1089 LKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHW 1148

Query: 121  VAGKRVLRYLKGTLSLAIKFSKVENFELKGYSDSD------------------------W 180
             A K +LRYL+GT    + F   +   LKGY+D+D                        W
Sbjct: 1149 EAVKWILRYLRGTTGDCLCFGGSDPI-LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISW 1208

Query: 181  --------GQSTAEVKFIATTATVNQAVWLKKLMHDLYLKQEESVKVFVD--ITLTISLN 240
                      ST E ++IA T T  + +WLK+ + +L L Q+E V V+ D    + +S N
Sbjct: 1209 QSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYV-VYCDSQSAIDLSKN 1268

Query: 241  PVFHGRAKHFKIKYYVLREMQKEGEVQLVQCSSEEQVANIFTKSFCMGRFQALRSKLGVY 259
             ++H R KH  ++Y+ +REM  +  +++++ S+ E  A++ TK     +F+  +  +G++
Sbjct: 1269 SMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGMH 1327

[Close]

BLAST of Chy6G122950 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.7e-32
Identity = 85/289 (29.41%), Postives = 136/289 (47.06%), Query Frame = 0


Query: 5    FEMTDLDLMYYFLGMEIQQTQNEIFLCQKKYVREILRRFNMEECKSVNTPMIQKEKLEKK 64
            F + + + ++YFLG+E ++    + L Q++Y  ++L R NM   K V TPM    KL   
Sbjct: 1158 FSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLH 1217

Query: 65   DGEEPADENVYRRLVGCLMYLTSTRPDIIYTASVLSRFLHFSSKNHMVAGKRVLRYLKGT 124
             G +  D   YR +VG L YL  TRPD+ Y  + LS+++H  + +H  A KRVLRYL GT
Sbjct: 1218 SGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGT 1277

Query: 125  LSLAIKFSKVENFELKGYSDSDWG--------------------------------QSTA 184
                I   K     L  YSD+DW                                 +S+ 
Sbjct: 1278 PDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSST 1337

Query: 185  EVKFIATTATVNQAVWLKKLMHDLYLKQEESVKVFVDI--TLTISLNPVFHGRAKHFKIK 244
            E ++ +   T ++  W+  L+ +L ++      ++ D      +  NPVFH R KH  + 
Sbjct: 1338 EAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALD 1397

Query: 245  YYVLREMQKEGEVQLVQCSSEEQVANIFTKSFCMGRFQALRSKLGVYSI 260
            Y+ +R   + G +++V  S+ +Q+A+  TK      FQ    K+GV  +
Sbjct: 1398 YHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIKV 1446

[Close]

BLAST of Chy6G122950 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.7e-18
Identity = 53/152 (34.87%), Postives = 83/152 (54.61%), Query Frame = 0


Query: 1   MMKVFEMTDLDLMYYFLGMEIQQTQNEIFLCQKKYVREILRRFNMEECKSVNTPMIQKEK 60
           +   F M DL  ++YFLG++I+   + +FL Q KY  +IL    M +CK ++TP+  K  
Sbjct: 27  LSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN 86

Query: 61  LEKKDGEEPADENVYRRLVGCLMYLTSTRPDIIYTASVLSRFLHFSSKNHMVAGKRVLRY 120
                 + P D + +R +VG L YLT TRPDI Y  +++ + +H  +       KRVLRY
Sbjct: 87  SSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRY 146

Query: 121 LKGTLSLAIKFSKVENFELKGYSDSDWGQSTA 153
           +KGT+   +   K     ++ + DSDW   T+
Sbjct: 147 VKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTS 177

[Close]

BLAST of Chy6G122950 vs. ExPASy TrEMBL
Match: A0A438IYC9 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_824 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 4.1e-78
Identity = 157/292 (53.77%), Postives = 202/292 (69.18%), Query Frame = 0


Query: 1   MMKVFEMTDLDLMYYFLGMEIQQTQNEIFLCQKKYVREILRRFNMEECKSVNTPMIQKEK 60
           M +VFEMTDL  M YFLGME+ Q QNEIF+CQ+KY +EIL++F MEECKS +TPM QKEK
Sbjct: 429 MEQVFEMTDLGEMSYFLGMEVHQKQNEIFICQQKYAKEILKKFKMEECKSTSTPMNQKEK 488

Query: 61  LEKKDGEEPADENVYRRLVGCLMYLTSTRPDIIYTASVLSRFLHFSSKNHMVAGKRVLRY 120
             K+DG E  DE +YR ++GCLMYLT+TRPDI++  S+LSR++H +S+ H  A KRV+RY
Sbjct: 489 FCKEDGAEKVDEGLYRSMIGCLMYLTATRPDIMHAVSLLSRYMHCASEIHFQAAKRVIRY 548

Query: 121 LKGTLSLAIKFSKVENFELKGYSDSDW--------------------------------G 180
           +KGT+   IKFS+V++F   G+SDSDW                                 
Sbjct: 549 VKGTVDYGIKFSQVQSFNFHGFSDSDWAGCVDDMRSTSGYCFSFGSGVSSWSSRKQEVVA 608

Query: 181 QSTAEVKFIATTATVNQAVWLKKLMHDLYLKQEESVKVFVDITLTISL--NPVFHGRAKH 240
           QSTAE ++IA  A VNQA+WL+KL+ DL +KQE S KVFVD   TIS+  +PVFHG+ KH
Sbjct: 609 QSTAEAEYIAAVAAVNQALWLRKLLTDLDMKQEVSTKVFVDNQATISIANDPVFHGKTKH 668

Query: 241 FKIKYYVLREMQKEGEVQLVQCSSEEQVANIFTKSFCMGRFQALRSKLGVYS 259
           FKIK Y LRE+QKEG++QLV C++E Q A+I TK+    RF+ LR +LGV S
Sbjct: 669 FKIKLYFLREVQKEGDIQLVYCNTESQNADILTKALPKIRFEFLRERLGVCS 720

[Close]

BLAST of Chy6G122950 vs. ExPASy TrEMBL
Match: A0A0V0I9I8 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 1.2e-77
Identity = 149/291 (51.20%), Postives = 199/291 (68.38%), Query Frame = 0


Query: 1   MMKVFEMTDLDLMYYFLGMEIQQTQNEIFLCQKKYVREILRRFNMEECKSVNTPMIQKEK 60
           MMKVFEMTDL LM YFLG+EI+Q ++ +F+CQKKY +EIL++F+ME+CK ++TPM QKE 
Sbjct: 1   MMKVFEMTDLGLMAYFLGVEIKQNEDNVFICQKKYAQEILKKFHMEDCKVMSTPMNQKEN 60

Query: 61  LEKKDGEEPADENVYRRLVGCLMYLTSTRPDIIYTASVLSRFLHFSSKNHMVAGKRVLRY 120
             K DG E  DE  YR L+GCLMYLT+TRPDI+Y  S LSRF+H +S  H+ A KR++RY
Sbjct: 61  FSKDDGTEKVDEAYYRSLIGCLMYLTATRPDILYAVSFLSRFMHCASDLHLRAAKRIVRY 120

Query: 121 LKGTLSLAIKFSKVENFELKGYSDSDWG-------------------------------Q 180
           +KGT++  +KF K + F L G+SDSDWG                               Q
Sbjct: 121 IKGTINYGVKFHKSQKFRLNGFSDSDWGGAPDMKSTSGFCFNIGSGAFSWYSKKQDIVAQ 180

Query: 181 STAEVKFIATTATVNQAVWLKKLMHDLYLKQEESVKVFVDITLTISL--NPVFHGRAKHF 240
           STAE +FI  T TVNQA+WL+K+M DL ++Q+E  +VF+D    IS+  NPVFH + KHF
Sbjct: 181 STAEAEFIVATTTVNQALWLRKIMCDLNMEQKEGTEVFIDNQAAISIANNPVFHAKTKHF 240

Query: 241 KIKYYVLREMQKEGEVQLVQCSSEEQVANIFTKSFCMGRFQALRSKLGVYS 259
            IK + LR++QK G+V+L+ C S+EQVA+IFTK   +G+F+  R KLG+ S
Sbjct: 241 NIKLFFLRDVQKHGDVKLLYCKSDEQVADIFTKPLSLGKFEFFREKLGISS 291

[Close]

BLAST of Chy6G122950 vs. ExPASy TrEMBL
Match: A0A151T915 (Copia protein OS=Cajanus cajan OX=3821 GN=KK1_018108 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 2.7e-77
Identity = 150/292 (51.37%), Postives = 198/292 (67.81%), Query Frame = 0


Query: 1   MMKVFEMTDLDLMYYFLGMEIQQTQNEIFLCQKKYVREILRRFNMEECKSVNTPMIQKEK 60
           MM+ FEMTDL  M YFLG+EI+Q+ NE+F+CQ+KY +EIL++F MEECKSVNTPM QKEK
Sbjct: 96  MMQAFEMTDLGHMTYFLGIEIKQSVNEVFICQRKYAKEILKKFQMEECKSVNTPMNQKEK 155

Query: 61  LEKKDGEEPADENVYRRLVGCLMYLTSTRPDIIYTASVLSRFLHFSSKNHMVAGKRVLRY 120
           L K++G +  DE  YR L+GC MYLT+TRPDI++  S+LSRF+H +S+ H+   KR+LRY
Sbjct: 156 LSKENGADKIDEGYYRSLIGCQMYLTATRPDILFVVSLLSRFMHCASEMHLKTAKRILRY 215

Query: 121 LKGTLSLAIKFSKVENFELKGYSDSDW--------------------------------G 180
           +KGT+   +KF K + F+L G+SDSDW                                 
Sbjct: 216 VKGTIDYGVKFEKCQEFKLYGFSDSDWAGFVDDMKSTSGYYFSLGSGVFSWCTKKQEIVA 275

Query: 181 QSTAEVKFIATTATVNQAVWLKKLMHDLYLKQEESVKVFVD--ITLTISLNPVFHGRAKH 240
           QSTAE KFIA TA VNQ +WLKK++ DL L Q+   ++FVD    + I+ NPV HG+ KH
Sbjct: 276 QSTAEAKFIAATAAVNQVLWLKKILSDLLLHQKNKTEIFVDNQAAIAIANNPVCHGKTKH 335

Query: 241 FKIKYYVLREMQKEGEVQLVQCSSEEQVANIFTKSFCMGRFQALRSKLGVYS 259
           F IK Y LREMQ+ GEV LV C +E+Q+A+IFTKS  + +F+ LR ++GV S
Sbjct: 336 FNIKLYFLREMQQSGEVNLVYCKTEDQLADIFTKSLPISKFELLRKRIGVCS 387

[Close]

BLAST of Chy6G122950 vs. ExPASy TrEMBL
Match: A0A151QUV8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_044989 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 3.0e-76
Identity = 149/292 (51.03%), Postives = 199/292 (68.15%), Query Frame = 0


Query: 1    MMKVFEMTDLDLMYYFLGMEIQQTQNEIFLCQKKYVREILRRFNMEECKSVNTPMIQKEK 60
            M  VFEMTDL  M +FLGM++QQ +NEIF+CQ+KY +E+L +FNM ECKS  TPM QKEK
Sbjct: 972  MENVFEMTDLGKMTFFLGMQVQQKKNEIFVCQEKYAKEVLMKFNMGECKSAATPMNQKEK 1031

Query: 61   LEKKDGEEPADENVYRRLVGCLMYLTSTRPDIIYTASVLSRFLHFSSKNHMVAGKRVLRY 120
              ++DG E  DE ++R L+GCLMYLT+TRPDI+++ S+LSR++H +S+ H  A KR+LRY
Sbjct: 1032 FCREDGAEKVDEKLFRSLIGCLMYLTATRPDIMHSVSLLSRYMHCASEIHFQAAKRILRY 1091

Query: 121  LKGTLSLAIKFSKVENFELKGYSDSDW--------------------------------G 180
            +KGT+   + F KVE+    GYSDSDW                                 
Sbjct: 1092 VKGTIDYGVWFKKVESLSFHGYSDSDWAGCVDDMRSTSGYCFSLGSGVFSWCSKKQEIIA 1151

Query: 181  QSTAEVKFIATTATVNQAVWLKKLMHDLYLKQEESVKVFVDITLTISL--NPVFHGRAKH 240
            QSTAE +++A  A VNQ VW++K+M DL+++QE+S K+FVD    IS+  NPVFHG+ KH
Sbjct: 1152 QSTAEAEYVAAAAAVNQTVWIRKIMADLHIEQEDSTKIFVDNQAAISIANNPVFHGKTKH 1211

Query: 241  FKIKYYVLREMQKEGEVQLVQCSSEEQVANIFTKSFCMGRFQALRSKLGVYS 259
            FKIK + LRE+Q+EG+V+LV C SE+QVA+I TK+    RF+ LR KLGV S
Sbjct: 1212 FKIKLFFLREVQREGQVKLVYCKSEDQVADILTKALPKSRFEFLRQKLGVCS 1263

[Close]

BLAST of Chy6G122950 vs. ExPASy TrEMBL
Match: A0A314KJ27 (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) OS=Nicotiana attenuata OX=49451 GN=POLX_38 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 3.0e-76
Identity = 147/290 (50.69%), Postives = 199/290 (68.62%), Query Frame = 0


Query: 1   MMKVFEMTDLDLMYYFLGMEIQQTQNEIFLCQKKYVREILRRFNMEECKSVNTPMIQKEK 60
           MM+ FEMTDL L+ YFLGMEI+  ++E+F+CQ KY +EIL++F ME CK++NTPM QKEK
Sbjct: 108 MMQAFEMTDLGLVTYFLGMEIKPEKDEVFICQNKYAKEILKKFGMENCKAMNTPMNQKEK 167

Query: 61  LEKKDGEEPADENVYRRLVGCLMYLTSTRPDIIYTASVLSRFLHFSSKNHMVAGKRVLRY 120
           L K DG E  DE+ +R ++GCLMYLT+TRPDI+Y  SVLSRF+H  S+ H+ A KRV+RY
Sbjct: 168 LRKDDGAEKVDESYFRSIIGCLMYLTATRPDILYAVSVLSRFMHCPSEVHLKAAKRVVRY 227

Query: 121 LKGTLSLAIKFSKVENFELKGYSDSDWG-------------------------------- 180
           +KGT++  +KF +  N EL GYSDSDWG                                
Sbjct: 228 IKGTINYGVKFHRSRNMELFGYSDSDWGGSLDDMKSTSGYCFSLGSRMFSWCSKKQDTVA 287

Query: 181 QSTAEVKFIATTATVNQAVWLKKLMHDLYLKQEESVKVFVD--ITLTISLNPVFHGRAKH 240
           QSTA+ +F+A TA VNQA+WL++++ DL+++  +S +VFVD    + IS NPVFHG+ KH
Sbjct: 288 QSTAQAEFVAATAAVNQALWLREILVDLHMEPRKSTEVFVDNQAAIAISHNPVFHGKTKH 347

Query: 241 FKIKYYVLREMQKEGEVQLVQCSSEEQVANIFTKSFCMGRFQALRSKLGV 257
           F IK + LRE+QK+G + LV C +EE+VA+IF K   + +F+ LR KLGV
Sbjct: 348 FNIKLFFLREVQKDGAITLVYCKTEEEVADIFKKPLPVSKFELLRQKLGV 397

[Close]

BLAST of Chy6G122950 vs. NCBI nr
Match: KYP63531.1 (Copia protein [Cajanus cajan])

HSP 1 Score: 299 bits (766), Expect = 5.61e-97
Identity = 150/292 (51.37%), Postives = 198/292 (67.81%), Query Frame = 0


Query: 1   MMKVFEMTDLDLMYYFLGMEIQQTQNEIFLCQKKYVREILRRFNMEECKSVNTPMIQKEK 60
           MM+ FEMTDL  M YFLG+EI+Q+ NE+F+CQ+KY +EIL++F MEECKSVNTPM QKEK
Sbjct: 96  MMQAFEMTDLGHMTYFLGIEIKQSVNEVFICQRKYAKEILKKFQMEECKSVNTPMNQKEK 155

Query: 61  LEKKDGEEPADENVYRRLVGCLMYLTSTRPDIIYTASVLSRFLHFSSKNHMVAGKRVLRY 120
           L K++G +  DE  YR L+GC MYLT+TRPDI++  S+LSRF+H +S+ H+   KR+LRY
Sbjct: 156 LSKENGADKIDEGYYRSLIGCQMYLTATRPDILFVVSLLSRFMHCASEMHLKTAKRILRY 215

Query: 121 LKGTLSLAIKFSKVENFELKGYSDSDWG-------------------------------- 180
           +KGT+   +KF K + F+L G+SDSDW                                 
Sbjct: 216 VKGTIDYGVKFEKCQEFKLYGFSDSDWAGFVDDMKSTSGYYFSLGSGVFSWCTKKQEIVA 275

Query: 181 QSTAEVKFIATTATVNQAVWLKKLMHDLYLKQEESVKVFVD--ITLTISLNPVFHGRAKH 240
           QSTAE KFIA TA VNQ +WLKK++ DL L Q+   ++FVD    + I+ NPV HG+ KH
Sbjct: 276 QSTAEAKFIAATAAVNQVLWLKKILSDLLLHQKNKTEIFVDNQAAIAIANNPVCHGKTKH 335

Query: 241 FKIKYYVLREMQKEGEVQLVQCSSEEQVANIFTKSFCMGRFQALRSKLGVYS 258
           F IK Y LREMQ+ GEV LV C +E+Q+A+IFTKS  + +F+ LR ++GV S
Sbjct: 336 FNIKLYFLREMQQSGEVNLVYCKTEDQLADIFTKSLPISKFELLRKRIGVCS 387

[Close]

BLAST of Chy6G122950 vs. NCBI nr
Match: OIT28784.1 (retrovirus-related pol polyprotein from transposon tnt 1-94, partial [Nicotiana attenuata])

HSP 1 Score: 296 bits (757), Expect = 1.70e-95
Identity = 147/290 (50.69%), Postives = 199/290 (68.62%), Query Frame = 0


Query: 1   MMKVFEMTDLDLMYYFLGMEIQQTQNEIFLCQKKYVREILRRFNMEECKSVNTPMIQKEK 60
           MM+ FEMTDL L+ YFLGMEI+  ++E+F+CQ KY +EIL++F ME CK++NTPM QKEK
Sbjct: 108 MMQAFEMTDLGLVTYFLGMEIKPEKDEVFICQNKYAKEILKKFGMENCKAMNTPMNQKEK 167

Query: 61  LEKKDGEEPADENVYRRLVGCLMYLTSTRPDIIYTASVLSRFLHFSSKNHMVAGKRVLRY 120
           L K DG E  DE+ +R ++GCLMYLT+TRPDI+Y  SVLSRF+H  S+ H+ A KRV+RY
Sbjct: 168 LRKDDGAEKVDESYFRSIIGCLMYLTATRPDILYAVSVLSRFMHCPSEVHLKAAKRVVRY 227

Query: 121 LKGTLSLAIKFSKVENFELKGYSDSDWG-------------------------------- 180
           +KGT++  +KF +  N EL GYSDSDWG                                
Sbjct: 228 IKGTINYGVKFHRSRNMELFGYSDSDWGGSLDDMKSTSGYCFSLGSRMFSWCSKKQDTVA 287

Query: 181 QSTAEVKFIATTATVNQAVWLKKLMHDLYLKQEESVKVFVD--ITLTISLNPVFHGRAKH 240
           QSTA+ +F+A TA VNQA+WL++++ DL+++  +S +VFVD    + IS NPVFHG+ KH
Sbjct: 288 QSTAQAEFVAATAAVNQALWLREILVDLHMEPRKSTEVFVDNQAAIAISHNPVFHGKTKH 347

Query: 241 FKIKYYVLREMQKEGEVQLVQCSSEEQVANIFTKSFCMGRFQALRSKLGV 256
           F IK + LRE+QK+G + LV C +EE+VA+IF K   + +F+ LR KLGV
Sbjct: 348 FNIKLFFLREVQKDGAITLVYCKTEEEVADIFKKPLPVSKFELLRQKLGV 397

[Close]

BLAST of Chy6G122950 vs. NCBI nr
Match: XP_019228613.1 (PREDICTED: uncharacterized protein LOC109209746 [Nicotiana attenuata])

HSP 1 Score: 293 bits (750), Expect = 2.68e-95
Identity = 147/292 (50.34%), Postives = 199/292 (68.15%), Query Frame = 0


Query: 1   MMKVFEMTDLDLMYYFLGMEIQQTQNEIFLCQKKYVREILRRFNMEECKSVNTPMIQKEK 60
           MM+VF+MTDL LM YFLGMEI+Q  + IF+CQKKY REIL++F ME CK+ +TPM  KEK
Sbjct: 42  MMQVFQMTDLGLMTYFLGMEIKQGSHAIFICQKKYAREILKKFGMENCKATSTPMNPKEK 101

Query: 61  LEKKDGEEPADENVYRRLVGCLMYLTSTRPDIIYTASVLSRFLHFSSKNHMVAGKRVLRY 120
           L K+DG +  DE  +R L+ CLMYLT+TRPDI++  S+LSRF+H +++ H+ A KR++RY
Sbjct: 102 LSKEDGTDKVDEGNFRSLIVCLMYLTATRPDILFAVSLLSRFMHCATEMHLRAAKRIIRY 161

Query: 121 LKGTLSLAIKFSKVENFELKGYSDSDWG-------------------------------- 180
           +KGT+   +KF K +N +L G+SDSDW                                 
Sbjct: 162 IKGTIDYGVKFKKCQNLKLYGFSDSDWAGSFDDIKSTSGYCFSLGSGIFSWCSKKQETVA 221

Query: 181 QSTAEVKFIATTATVNQAVWLKKLMHDLYLKQEESVKVFVD--ITLTISLNPVFHGRAKH 240
           QSTAE +FIATT  VNQA+WL+KLM DL++ Q ++ K+ VD    + IS NPVFHG+ KH
Sbjct: 222 QSTAEAEFIATTTAVNQALWLRKLMCDLHMDQRDNTKIHVDNQAAIAISHNPVFHGKTKH 281

Query: 241 FKIKYYVLREMQKEGEVQLVQCSSEEQVANIFTKSFCMGRFQALRSKLGVYS 258
           F IK + LR++QK GEV LV C SE+Q+A++FTKS  + +F+ LR +LG+ S
Sbjct: 282 FNIKLFFLRDVQKNGEVILVYCKSEDQLADVFTKSLPVSKFEFLRQRLGIRS 333

[Close]

BLAST of Chy6G122950 vs. NCBI nr
Match: PKI56466.1 (hypothetical protein CRG98_023104 [Punica granatum])

HSP 1 Score: 291 bits (746), Expect = 7.33e-95
Identity = 152/286 (53.15%), Postives = 193/286 (67.48%), Query Frame = 0


Query: 3   KVFEMTDLDLMYYFLGMEIQQTQNEIFLCQKKYVREILRRFNMEECKSVNTPMIQKEKLE 62
           KVFEMTDL  M YFLGM++QQ +NE F+CQKKY+REIL++F MEECKS  TPM  KEKL+
Sbjct: 33  KVFEMTDLGDMSYFLGMKVQQKKNEAFICQKKYLREILKKFKMEECKSALTPMNLKEKLK 92

Query: 63  KKDGEEPADENVYRRLVGCLMYLTSTRPDIIYTASVLSRFLHFSSKNHMVAGKRVLRYLK 122
           K DG +  D + YR L+GCLMYLT+TRP+I+   SVLSR+L  +S+NHMVA KRV+RYLK
Sbjct: 93  KDDGSDATDASRYRSLIGCLMYLTATRPNILLVVSVLSRYLSCASENHMVAAKRVVRYLK 152

Query: 123 GTLSLAIKFSKVENFELKGYSDSDWG------------------------------QSTA 182
           GT S  +KF K + F+L GY DSDW                               QS A
Sbjct: 153 GTPSFGVKFCKSDQFKLHGYIDSDWAGSIDDISSGYCLSFGSTCFSWSSKKQDIVAQSIA 212

Query: 183 EVKFIATTATVNQAVWLKKLMHDLYLKQEESVKVFVD--ITLTISLNPVFHGRAKHFKIK 242
           E K IA T   NQAVWL+KLM+DL    EE+   +VD    + +S N VFHG+ KHFK+K
Sbjct: 213 EAKLIAATTAANQAVWLRKLMNDLGFGVEEATTSYVDNQAAIAVSQNLVFHGKTKHFKVK 272

Query: 243 YYVLREMQKEGEVQLVQCSSEEQVANIFTKSFCMGRFQALRSKLGV 256
           Y+ LRE+Q EG+V+L  CSSE+Q+A++FTK+F +G+F  LR  +GV
Sbjct: 273 YFYLREVQHEGKVKLQHCSSEDQLADMFTKAFSVGQFNHLRQNIGV 318

[Close]

BLAST of Chy6G122950 vs. NCBI nr
Match: RVX01687.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 302 bits (773), Expect = 3.86e-94
Identity = 157/292 (53.77%), Postives = 202/292 (69.18%), Query Frame = 0


Query: 1   MMKVFEMTDLDLMYYFLGMEIQQTQNEIFLCQKKYVREILRRFNMEECKSVNTPMIQKEK 60
           M +VFEMTDL  M YFLGME+ Q QNEIF+CQ+KY +EIL++F MEECKS +TPM QKEK
Sbjct: 429 MEQVFEMTDLGEMSYFLGMEVHQKQNEIFICQQKYAKEILKKFKMEECKSTSTPMNQKEK 488

Query: 61  LEKKDGEEPADENVYRRLVGCLMYLTSTRPDIIYTASVLSRFLHFSSKNHMVAGKRVLRY 120
             K+DG E  DE +YR ++GCLMYLT+TRPDI++  S+LSR++H +S+ H  A KRV+RY
Sbjct: 489 FCKEDGAEKVDEGLYRSMIGCLMYLTATRPDIMHAVSLLSRYMHCASEIHFQAAKRVIRY 548

Query: 121 LKGTLSLAIKFSKVENFELKGYSDSDWG-------------------------------- 180
           +KGT+   IKFS+V++F   G+SDSDW                                 
Sbjct: 549 VKGTVDYGIKFSQVQSFNFHGFSDSDWAGCVDDMRSTSGYCFSFGSGVSSWSSRKQEVVA 608

Query: 181 QSTAEVKFIATTATVNQAVWLKKLMHDLYLKQEESVKVFVDITLTISL--NPVFHGRAKH 240
           QSTAE ++IA  A VNQA+WL+KL+ DL +KQE S KVFVD   TIS+  +PVFHG+ KH
Sbjct: 609 QSTAEAEYIAAVAAVNQALWLRKLLTDLDMKQEVSTKVFVDNQATISIANDPVFHGKTKH 668

Query: 241 FKIKYYVLREMQKEGEVQLVQCSSEEQVANIFTKSFCMGRFQALRSKLGVYS 258
           FKIK Y LRE+QKEG++QLV C++E Q A+I TK+    RF+ LR +LGV S
Sbjct: 669 FKIKLYFLREVQKEGDIQLVYCNTESQNADILTKALPKIRFEFLRERLGVCS 720

[Close]

BLAST of Chy6G122950 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 104.0 bits (258), Expect = 1.9e-22
Identity = 69/246 (28.05%), Postives = 114/246 (46.34%), Query Frame = 0


Query: 5   FEMTDLDLMYYFLGMEIQQTQNEIFLCQKKYVREILRRFNMEECKSVNTPMIQKEKLEKK 64
           F++ DL  + YFLG+EI ++   I +CQ+KY  ++L    +  CK  + PM         
Sbjct: 308 FKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAH 367

Query: 65  DGEEPADENVYRRLVGCLMYLTSTRPDIIYTASVLSRFLHFSSKNHMVAGKRVLRYLKGT 124
            G +  D   YRRL+G LMYL  TR DI +  + LS+F       H  A  ++L Y+KGT
Sbjct: 368 SGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGT 427

Query: 125 LSLAIKFSKVENFELKGYSDSDW--------------------------------GQSTA 184
           +   + +S     +L+ +SD+ +                                 +S+A
Sbjct: 428 VGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSA 487

Query: 185 EVKFIATTATVNQAVWLKKLMHDLYLKQEESVKVFVDIT--LTISLNPVFHGRAKHFKIK 217
           E ++ A +   ++ +WL +   +L L   +   +F D T  + I+ N VFH R KH +  
Sbjct: 488 EAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESD 547

[Close]

BLAST of Chy6G122950 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-19
Identity = 53/152 (34.87%), Postives = 83/152 (54.61%), Query Frame = 0


Query: 1   MMKVFEMTDLDLMYYFLGMEIQQTQNEIFLCQKKYVREILRRFNMEECKSVNTPMIQKEK 60
           +   F M DL  ++YFLG++I+   + +FL Q KY  +IL    M +CK ++TP+  K  
Sbjct: 27  LSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN 86

Query: 61  LEKKDGEEPADENVYRRLVGCLMYLTSTRPDIIYTASVLSRFLHFSSKNHMVAGKRVLRY 120
                 + P D + +R +VG L YLT TRPDI Y  +++ + +H  +       KRVLRY
Sbjct: 87  SSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRY 146

Query: 121 LKGTLSLAIKFSKVENFELKGYSDSDWGQSTA 153
           +KGT+   +   K     ++ + DSDW   T+
Sbjct: 147 VKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTS 177

[Close]

BLAST of Chy6G122950 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 57.0 bits (136), Expect = 2.6e-08
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 83  MYLTSTRPDIIYTASVLSRFLHFSSKNHMVAGKRVLRYLKGTLSLAIKFSKVENFELKGY 142
           MYLT TRPD+ +  + LS+F   S    M A  +VL Y+KGT+   + +S   + +LK +
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 143 SDSDW 148
           +DSDW
Sbjct: 61  ADSDW 65

The following BLAST results are available for this feature:

BLAST of Chy6G122950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	3.7e-39	36.03	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	5.5e-35	31.12	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P10978	2.5e-32	32.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	5.7e-32	29.41	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92519	2.7e-18	34.87	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Chy6G122950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438IYC9	4.1e-78	53.77	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A0V0I9I8	1.2e-77	51.20	Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1	[more]
A0A151T915	2.7e-77	51.37	Copia protein OS=Cajanus cajan OX=3821 GN=KK1_018108 PE=4 SV=1	[more]
A0A151QUV8	3.0e-76	51.03	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]
A0A314KJ27	3.0e-76	50.69	Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) OS=Nicoti...	[more]

BLAST of Chy6G122950 vs. NCBI nr


Match Name	E-value	Identity	Description
KYP63531.1	5.61e-97	51.37	Copia protein [Cajanus cajan]	[more]
OIT28784.1	1.70e-95	50.69	retrovirus-related pol polyprotein from transposon tnt 1-94, partial [Nicotiana ...	[more]
XP_019228613.1	2.68e-95	50.34	PREDICTED: uncharacterized protein LOC109209746 [Nicotiana attenuata]	[more]
PKI56466.1	7.33e-95	53.15	hypothetical protein CRG98_023104 [Punica granatum]	[more]
RVX01687.1	3.86e-94	53.77	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]

BLAST of Chy6G122950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.9e-22	28.05	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.9e-19	34.87	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	2.6e-08	41.54	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..56 e-value: 4.4E-9 score: 36.3
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 53..149
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 53..149
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 140..241 e-value: 3.21871E-32 score: 113.332
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 13..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G122950.1	Chy6G122950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0043167	ion binding
molecular_function	GO:0097159	organic cyclic compound binding