Chy6G122900 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G122900
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Spindle pole body component protein
Location	chrH06: 20796943 .. 20797456 (-)
RNA-Seq Expression	Chy6G122900
Synteny	Chy6G122900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCGCATAGAGAATCCGGAGGAGACAGAGGCGGCAGGCTCGAAGGATATGAGATCTCTGGCTCCGATTACCACCAGAAAACACCGGCGGAGAAAACGAAGCGCGTTGTTACCTTCGGCGGCGGCGAAACTAGCCGCCGATTGGAAGCCGTCGCTGGGAGCGATTTCAGAGGATAAGGTAGTTCTGGTAGTGATGGAGAGAGAGAAGAGCGATGATCAGACCACGGAATTGGAACGATCGGTGAAAAGAAAGAGCAGATCCCGAGACGGAGAAAGCAGAGGAGTTCACGGCCGTAATAACAGTAACGATTTCAGGTACGTTAACGTTTTTGTCAGCTCATGAATCTTCCGTATGATTTTCAAAACCGTAAGGATCCGTGAAATGAAAACGACATCTGAAATGAATCTTTCCGTTAATTTTTTTTTTCTCTGTCTCCCTCAGCCTTAGGCAAAGTCCGTCGGCGATTCCGGTGGTGATCCCGGCATTTTCTCCGGCTCCGTTCTTGTTCTGA

mRNA sequence

ATGTCGCGCATAGAGAATCCGGAGGAGACAGAGGCGGCAGGCTCGAAGGATATGAGATCTCTGGCTCCGATTACCACCAGAAAACACCGGCGGAGAAAACGAAGCGCGTTGTTACCTTCGGCGGCGGCGAAACTAGCCGCCGATTGGAAGCCGTCGCTGGGAGCGATTTCAGAGGATAAGGTAGTTCTGGTAGTGATGGAGAGAGAGAAGAGCGATGATCAGACCACGGAATTGGAACGATCGGTGAAAAGAAAGAGCAGATCCCGAGACGGAGAAAGCAGAGGAGTTCACGGCCGTAATAACAGTAACGATTTCAGCCTTAGGCAAAGTCCGTCGGCGATTCCGGTGGTGATCCCGGCATTTTCTCCGGCTCCGTTCTTGTTCTGA

Coding sequence (CDS)

ATGTCGCGCATAGAGAATCCGGAGGAGACAGAGGCGGCAGGCTCGAAGGATATGAGATCTCTGGCTCCGATTACCACCAGAAAACACCGGCGGAGAAAACGAAGCGCGTTGTTACCTTCGGCGGCGGCGAAACTAGCCGCCGATTGGAAGCCGTCGCTGGGAGCGATTTCAGAGGATAAGGTAGTTCTGGTAGTGATGGAGAGAGAGAAGAGCGATGATCAGACCACGGAATTGGAACGATCGGTGAAAAGAAAGAGCAGATCCCGAGACGGAGAAAGCAGAGGAGTTCACGGCCGTAATAACAGTAACGATTTCAGCCTTAGGCAAAGTCCGTCGGCGATTCCGGTGGTGATCCCGGCATTTTCTCCGGCTCCGTTCTTGTTCTGA

Protein sequence

MSRIENPEETEAAGSKDMRSLAPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDKVVLVVMEREKSDDQTTELERSVKRKSRSRDGESRGVHGRNNSNDFSLRQSPSAIPVVIPAFSPAPFLF*

Homology

[Close]

BLAST of Chy6G122900 vs. ExPASy TrEMBL
Match: A0A0A0L6G1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G094500 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.2e-57
Identity = 124/128 (96.88%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MSRIENPEETEAAGSKDMRSLAPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK 60
           MSRI+NPEETEAAGSK+MRSL PITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK
Sbjct: 16  MSRIDNPEETEAAGSKEMRSLPPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK 75

Query: 61  VVLVVMEREKSDDQTTELERSVKRKSRSRDGESRGVHGRNNSNDFSLRQSPSAIPVVIPA 120
           VVLVVMEREKSD+QTTELERSVKRKSRSRDGESRGVHGRNNSNDFSLRQSPSAIPVVIPA
Sbjct: 76  VVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDFSLRQSPSAIPVVIPA 135

Query: 121 FSPAPFLF 129
           FSPAPFLF
Sbjct: 136 FSPAPFLF 143

[Close]

BLAST of Chy6G122900 vs. ExPASy TrEMBL
Match: A0A5A7TVI5 (Spindle pole body component protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001340 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.7e-53
Identity = 119/128 (92.97%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MSRIENPEETEAAGSKDMRSLAPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK 60
           MSRIENPEETEAA SK+MR+LAPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK
Sbjct: 1   MSRIENPEETEAAASKEMRTLAPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK 60

Query: 61  VVLVVMEREKSDDQTTELERSVKRKSRSRDGESRGVHGRNNSNDFSLRQSPSAIPVVIPA 120
           VVLVVMEREKSDDQ  ELERSVKRKS SRDGESR VHGR NSNDFSLRQ+PSAIPVVIPA
Sbjct: 61  VVLVVMEREKSDDQAAELERSVKRKSGSRDGESR-VHGRKNSNDFSLRQNPSAIPVVIPA 120

Query: 121 FSPAPFLF 129
           FSPAPFLF
Sbjct: 121 FSPAPFLF 127

[Close]

BLAST of Chy6G122900 vs. ExPASy TrEMBL
Match: A0A1S3BTM8 (uncharacterized protein LOC103493394 OS=Cucumis melo OX=3656 GN=LOC103493394 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.7e-53
Identity = 119/128 (92.97%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MSRIENPEETEAAGSKDMRSLAPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK 60
           MSRIENPEETEAA SK+MR+LAPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK
Sbjct: 16  MSRIENPEETEAAASKEMRTLAPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK 75

Query: 61  VVLVVMEREKSDDQTTELERSVKRKSRSRDGESRGVHGRNNSNDFSLRQSPSAIPVVIPA 120
           VVLVVMEREKSDDQ  ELERSVKRKS SRDGESR VHGR NSNDFSLRQ+PSAIPVVIPA
Sbjct: 76  VVLVVMEREKSDDQAAELERSVKRKSGSRDGESR-VHGRKNSNDFSLRQNPSAIPVVIPA 135

Query: 121 FSPAPFLF 129
           FSPAPFLF
Sbjct: 136 FSPAPFLF 142

[Close]

BLAST of Chy6G122900 vs. ExPASy TrEMBL
Match: A0A6J1EVT0 (uncharacterized protein LOC111438455 OS=Cucurbita moschata OX=3662 GN=LOC111438455 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.3e-44
Identity = 104/128 (81.25%), Postives = 115/128 (89.84%), Query Frame = 0


Query: 1   MSRIENPEETEAAGSKDMRSLAPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK 60
           MSR+ENPE T A G ++M+SLAPITTRKHRRRKR ALLPS AAKLAADWKPSLGAISEDK
Sbjct: 16  MSRLENPEATAAPGVEEMKSLAPITTRKHRRRKRGALLPS-AAKLAADWKPSLGAISEDK 75

Query: 61  VVLVVMEREKSDDQTTELERSVKRKSRSRDGESRGVHGRNNSNDFSLRQSPSAIPVVIPA 120
           VVLV+ EREKSDDQT E ERSVKRKS SRDGE+RGV+GR+NSNDF  R+SP++IPVVIPA
Sbjct: 76  VVLVLREREKSDDQTAESERSVKRKSGSRDGEARGVNGRSNSNDF--RRSPASIPVVIPA 135

Query: 121 FSPAPFLF 129
           FSP PFLF
Sbjct: 136 FSPTPFLF 140

[Close]

BLAST of Chy6G122900 vs. ExPASy TrEMBL
Match: A0A6J1JD62 (uncharacterized protein LOC111483313 OS=Cucurbita maxima OX=3661 GN=LOC111483313 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.1e-42
Identity = 102/128 (79.69%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MSRIENPEETEAAGSKDMRSLAPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK 60
           MSR+ENPE T A G ++M+SLAPI TRKHRRRKR ALLPS AAKLAADWKPSLGAISEDK
Sbjct: 16  MSRLENPEATAAPGVEEMKSLAPIATRKHRRRKRGALLPS-AAKLAADWKPSLGAISEDK 75

Query: 61  VVLVVMEREKSDDQTTELERSVKRKSRSRDGESRGVHGRNNSNDFSLRQSPSAIPVVIPA 120
           VVLV+ EREKSDDQT   ERSVKRKS SRDGE+RGV+GR+NSNDF  R+SP++IPVVIPA
Sbjct: 76  VVLVLREREKSDDQTAGSERSVKRKSGSRDGEARGVNGRSNSNDF--RRSPASIPVVIPA 135

Query: 121 FSPAPFLF 129
           FSP PFLF
Sbjct: 136 FSPTPFLF 140

[Close]

BLAST of Chy6G122900 vs. NCBI nr
Match: XP_004149939.2 (uncharacterized protein LOC101213465 [Cucumis sativus] >KGN56182.1 hypothetical protein Csa_011709 [Cucumis sativus])

HSP 1 Score: 232 bits (591), Expect = 4.22e-76
Identity = 124/128 (96.88%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MSRIENPEETEAAGSKDMRSLAPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK 60
           MSRI+NPEETEAAGSK+MRSL PITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK
Sbjct: 16  MSRIDNPEETEAAGSKEMRSLPPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK 75

Query: 61  VVLVVMEREKSDDQTTELERSVKRKSRSRDGESRGVHGRNNSNDFSLRQSPSAIPVVIPA 120
           VVLVVMEREKSD+QTTELERSVKRKSRSRDGESRGVHGRNNSNDFSLRQSPSAIPVVIPA
Sbjct: 76  VVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDFSLRQSPSAIPVVIPA 135

Query: 121 FSPAPFLF 128
           FSPAPFLF
Sbjct: 136 FSPAPFLF 143

[Close]

BLAST of Chy6G122900 vs. NCBI nr
Match: KAA0046974.1 (spindle pole body component protein [Cucumis melo var. makuwa] >TYK04810.1 spindle pole body component protein [Cucumis melo var. makuwa])

HSP 1 Score: 216 bits (550), Expect = 4.44e-70
Identity = 119/128 (92.97%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MSRIENPEETEAAGSKDMRSLAPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK 60
           MSRIENPEETEAA SK+MR+LAPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK
Sbjct: 1   MSRIENPEETEAAASKEMRTLAPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK 60

Query: 61  VVLVVMEREKSDDQTTELERSVKRKSRSRDGESRGVHGRNNSNDFSLRQSPSAIPVVIPA 120
           VVLVVMEREKSDDQ  ELERSVKRKS SRDGESR VHGR NSNDFSLRQ+PSAIPVVIPA
Sbjct: 61  VVLVVMEREKSDDQAAELERSVKRKSGSRDGESR-VHGRKNSNDFSLRQNPSAIPVVIPA 120

Query: 121 FSPAPFLF 128
           FSPAPFLF
Sbjct: 121 FSPAPFLF 127

[Close]

BLAST of Chy6G122900 vs. NCBI nr
Match: XP_008452335.1 (PREDICTED: uncharacterized protein LOC103493394 [Cucumis melo])

HSP 1 Score: 216 bits (550), Expect = 7.26e-70
Identity = 119/128 (92.97%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MSRIENPEETEAAGSKDMRSLAPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK 60
           MSRIENPEETEAA SK+MR+LAPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK
Sbjct: 16  MSRIENPEETEAAASKEMRTLAPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK 75

Query: 61  VVLVVMEREKSDDQTTELERSVKRKSRSRDGESRGVHGRNNSNDFSLRQSPSAIPVVIPA 120
           VVLVVMEREKSDDQ  ELERSVKRKS SRDGESR VHGR NSNDFSLRQ+PSAIPVVIPA
Sbjct: 76  VVLVVMEREKSDDQAAELERSVKRKSGSRDGESR-VHGRKNSNDFSLRQNPSAIPVVIPA 135

Query: 121 FSPAPFLF 128
           FSPAPFLF
Sbjct: 136 FSPAPFLF 142

[Close]

BLAST of Chy6G122900 vs. NCBI nr
Match: XP_038905048.1 (uncharacterized protein LOC120091204 [Benincasa hispida])

HSP 1 Score: 207 bits (528), Expect = 6.46e-66
Identity = 113/128 (88.28%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MSRIENPEETEAAGSKDMRSLAPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK 60
           MSRIENPEETEA G K++RSLAPITTRKHRRRKRSA LPSA AKLA DWKPSLGAISEDK
Sbjct: 58  MSRIENPEETEAPGVKEVRSLAPITTRKHRRRKRSASLPSA-AKLAVDWKPSLGAISEDK 117

Query: 61  VVLVVMEREKSDDQTTELERSVKRKSRSRDGESRGVHGRNNSNDFSLRQSPSAIPVVIPA 120
           VVLVVMEREKSD+QT E ERSVKRKS SRDGESRGVHGRNNSNDFS+R+SP+AIPVVIPA
Sbjct: 118 VVLVVMEREKSDEQTAESERSVKRKSGSRDGESRGVHGRNNSNDFSIRRSPAAIPVVIPA 177

Query: 121 FSPAPFLF 128
           FSP PFLF
Sbjct: 178 FSPTPFLF 184

[Close]

BLAST of Chy6G122900 vs. NCBI nr
Match: XP_022932132.1 (uncharacterized protein LOC111438455 [Cucurbita moschata] >XP_023520436.1 uncharacterized protein LOC111783825 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 187 bits (474), Expect = 2.58e-58
Identity = 104/128 (81.25%), Postives = 115/128 (89.84%), Query Frame = 0


Query: 1   MSRIENPEETEAAGSKDMRSLAPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDK 60
           MSR+ENPE T A G ++M+SLAPITTRKHRRRKR ALLPSA AKLAADWKPSLGAISEDK
Sbjct: 16  MSRLENPEATAAPGVEEMKSLAPITTRKHRRRKRGALLPSA-AKLAADWKPSLGAISEDK 75

Query: 61  VVLVVMEREKSDDQTTELERSVKRKSRSRDGESRGVHGRNNSNDFSLRQSPSAIPVVIPA 120
           VVLV+ EREKSDDQT E ERSVKRKS SRDGE+RGV+GR+NSNDF  R+SP++IPVVIPA
Sbjct: 76  VVLVLREREKSDDQTAESERSVKRKSGSRDGEARGVNGRSNSNDF--RRSPASIPVVIPA 135

Query: 121 FSPAPFLF 128
           FSP PFLF
Sbjct: 136 FSPTPFLF 140

[Close]

BLAST of Chy6G122900 vs. TAIR 10
Match: AT5G54585.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-05
Identity = 43/126 (34.13%), Postives = 66/126 (52.38%), Query Frame = 0


Query: 8   EETEAAGSKDMRSLAPITTRKHRRRKRSALLPSAAAKLAADWKPSLGAISEDKVVLVVME 67
           +E+ A+ + D  S    T  K RRR++   +     ++ A+W+PSL  ISE+K  +  + 
Sbjct: 18  QESAASTADDSVSDETQTLMKQRRRRKRVRVAGQPGQV-AEWRPSLSVISENKPAITKIS 77

Query: 68  REKSDDQTTELERSVKRKSRSRDG-----ESRGVHGRNNSNDFSLRQSPSAIPVVIPAFS 127
            EK+++     ++ V+RKS    G      S G H R  S+DF      +A   VIPAFS
Sbjct: 78  -EKNEE-----KKKVRRKSEGNGGGDASSRSGGGHIRFRSDDF----GRNAFEPVIPAFS 132

Query: 128 PAPFLF 129
           P PF+F
Sbjct: 138 PTPFMF 132

The following BLAST results are available for this feature:

BLAST of Chy6G122900 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G122900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6G1	1.2e-57	96.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G094500 PE=4 SV=1	[more]
A0A5A7TVI5	6.7e-53	92.97	Spindle pole body component protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3BTM8	6.7e-53	92.97	uncharacterized protein LOC103493394 OS=Cucumis melo OX=3656 GN=LOC103493394 PE=...	[more]
A0A6J1EVT0	4.3e-44	81.25	uncharacterized protein LOC111438455 OS=Cucurbita moschata OX=3662 GN=LOC1114384...	[more]
A0A6J1JD62	1.1e-42	79.69	uncharacterized protein LOC111483313 OS=Cucurbita maxima OX=3661 GN=LOC111483313...	[more]

BLAST of Chy6G122900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149939.2	4.22e-76	96.88	uncharacterized protein LOC101213465 [Cucumis sativus] >KGN56182.1 hypothetical ...	[more]
KAA0046974.1	4.44e-70	92.97	spindle pole body component protein [Cucumis melo var. makuwa] >TYK04810.1 spind...	[more]
XP_008452335.1	7.26e-70	92.97	PREDICTED: uncharacterized protein LOC103493394 [Cucumis melo]	[more]
XP_038905048.1	6.46e-66	88.28	uncharacterized protein LOC120091204 [Benincasa hispida]	[more]
XP_022932132.1	2.58e-58	81.25	uncharacterized protein LOC111438455 [Cucurbita moschata] >XP_023520436.1 unchar...	[more]

BLAST of Chy6G122900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54585.1	1.0e-05	34.13	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR35318:SF2	BNAA10G08410D PROTEIN	coord: 5..128
None	No IPR available	PANTHER	PTHR35318	BNAA10G08410D PROTEIN	coord: 5..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G122900.1	Chy6G122900.1	mRNA