Chy6G122500 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G122500
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH06: 20106114 .. 20107416 (-)
RNA-Seq Expression	Chy6G122500
Synteny	Chy6G122500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCATGGATGGCGGCACCTCGCCGAATAGTTTTGTCGCACAACTCACTTTCAACGCCTCAAATCGTCTCTCTGACGCATCGGCGCGGTCTCGCTGGCGCTGGCGGTATTTACGTTTTCCAATTATTGCTTTCTTTACAGTTCGTAATTTAGTTTGTCCTTCACCCCGAGCTACTAATGATTGGATGATGAGAAACTTTGAAATTGGAAGGAACTAGAAATCTATGTGCTTATTTCGGTATAATAACTATTCGCTACTCGATGAATTAGGAATTAGAACCAGTAGTAGAACTGGCTCCATGAGCACATTTTTCGTCTCCTCGATCATTTTCCTTTGGGTTTTTCTTCCTTGATTTCTGAAATTGTTCATCTCATATATGAATTTGTTGATTCTCTGCAATCTGCTCTACGTTATGTAAAAAAATCCATTTCTACGATACTCCACTTCCAACTTTTACAACTTTTATAGACTTGGAAAACCAATTAAAAGTTACATAAACTTGACTTTATAACGTATTCTTTATGCAATTGAGACTCAAACTTTCTAAACCAAACTTCGGGTACTGAGAATTATTGTCATGCGTAGCTAGCTATACAATCGTGTCTTTGGAACTTGGCACGACGCCCTAATAACTTTACAGTTTACGTCTGATTCATCATGTCAAATGCTGCTATCAGATTTGAGAGCTGAAGTAATTGATGAACTTGGATCTACAAGTAATTTAATTTGTTTGTTTTACTTTTGTAATCTTGCAGATCATCATGGACCTCCGAAGGTGAACTTTTGGGAGGATCCCTTTAATCCATCCAGATGGAAAGGAGAACATGTGAGCTTGTAGTAGTTATTGAAACTGATTATCATTTGAACTCTGATTATTTCATTCCCATCATATACTATGATGCATACACATTTTAGTTTGGTTAACATGTTTGTTGTGTTGAACGTCCATGTTGGATACTCCGACACCGCGATGGATAGTGTGTAATACAATAGTTAAACAAACCGAGTACATGATGAGTACTCTTGTTAAACATTATAATCCCGTGGAGAACAGTAACACTCATGTATCTTTTGGAAACAATTATTAGAGACATGATTAATGCTACCTGCCATCTTATATAAATCTTCGAATTGATTGATTTCTTGCATTGGTTTTTACAATCACTACCCACCTTACTAACATATATGTATATATATTCACAGTTTGTGATTGTGTCTTTGACTGGATGGGGTTTAGTTCTTTACGGGGCCTACGATTTCTTCACTAAAGGCAAGAAGGAAGAGGTATGGCTTTTTTAG

mRNA sequence

ATGGCGGCATGGATGGCGGCACCTCGCCGAATAGTTTTGTCGCACAACTCACTTTCAACGCCTCAAATCGTCTCTCTGACGCATCGGCGCGGTCTCGCTGGCGCTGGCGATCATCATGGACCTCCGAAGGTGAACTTTTGGGAGGATCCCTTTAATCCATCCAGATGGAAAGGAGAACATTTTGTGATTGTGTCTTTGACTGGATGGGGTTTAGTTCTTTACGGGGCCTACGATTTCTTCACTAAAGGCAAGAAGGAAGAGGTATGGCTTTTTTAG

Coding sequence (CDS)

ATGGCGGCATGGATGGCGGCACCTCGCCGAATAGTTTTGTCGCACAACTCACTTTCAACGCCTCAAATCGTCTCTCTGACGCATCGGCGCGGTCTCGCTGGCGCTGGCGATCATCATGGACCTCCGAAGGTGAACTTTTGGGAGGATCCCTTTAATCCATCCAGATGGAAAGGAGAACATTTTGTGATTGTGTCTTTGACTGGATGGGGTTTAGTTCTTTACGGGGCCTACGATTTCTTCACTAAAGGCAAGAAGGAAGAGGTATGGCTTTTTTAG

Protein sequence

MAAWMAAPRRIVLSHNSLSTPQIVSLTHRRGLAGAGDHHGPPKVNFWEDPFNPSRWKGEHFVIVSLTGWGLVLYGAYDFFTKGKKEEVWLF*

Homology

[Close]

BLAST of Chy6G122500 vs. ExPASy TrEMBL
Match: A0A0A0L362 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G099740 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.2e-43
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MAAWMAAPRRIVLSHNSLSTPQIVSLTHRRGLAGAGDHHGPPKVNFWEDPFNPSRWKGEH 60
          MAAWMAAPRRI+LSHNSLSTPQI SLTHRRGLAG GDHHGPPKVNFWEDPFNPSRWK EH
Sbjct: 1  MAAWMAAPRRILLSHNSLSTPQIASLTHRRGLAGGGDHHGPPKVNFWEDPFNPSRWKREH 60

Query: 61 FVIVSLTGWGLVLYGAYDFFTKGKKEE 88
          FVIVSLTGWGLVLYGAYDFFTKGKKEE
Sbjct: 61 FVIVSLTGWGLVLYGAYDFFTKGKKEE 87

[Close]

BLAST of Chy6G122500 vs. ExPASy TrEMBL
Match: A0A5A7U055 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G001040 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.2e-41
Identity = 79/87 (90.80%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 1  MAAWMAAPRRIVLSHNSLSTPQIVSLTHRRGLAGAGDHHGPPKVNFWEDPFNPSRWKGEH 60
          MAAW AA RRIVLSHNS+STPQ  SL HRRGLAG  DHHGPPKVNFWEDPFNPSRWKGEH
Sbjct: 1  MAAWTAAARRIVLSHNSVSTPQFASLKHRRGLAGGADHHGPPKVNFWEDPFNPSRWKGEH 60

Query: 61 FVIVSLTGWGLVLYGAYDFFTKGKKEE 88
          FVIVSLTGWGLVLYGAYDFFTKGKKEE
Sbjct: 61 FVIVSLTGWGLVLYGAYDFFTKGKKEE 87

[Close]

BLAST of Chy6G122500 vs. ExPASy TrEMBL
Match: A0A6P4AKA6 (uncharacterized protein LOC107430112 isoform X2 OS=Ziziphus jujuba OX=326968 GN=LOC107430112 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.1e-28
Identity = 60/86 (69.77%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 1  MAAWMAAPRRIVLSHNSLSTPQIVSLTHRRGLAGAGDHHGPPKVNFWEDPFNPSRWKGEH 60
          +AA  AA    + S  S ST Q  SL HRRGLAG GDHHGPPKVNFW+DP NPS+WK EH
Sbjct: 6  LAARQAANLLRLSSPKSASTAQAASLVHRRGLAGGGDHHGPPKVNFWQDPLNPSKWKEEH 65

Query: 61 FVIVSLTGWGLVLYGAYDFFTKGKKE 87
          FVIVSLTGWGL+LYG Y +FTKGKK+
Sbjct: 66 FVIVSLTGWGLLLYGGYKYFTKGKKD 91

[Close]

BLAST of Chy6G122500 vs. ExPASy TrEMBL
Match: A0A6P4BBQ1 (uncharacterized protein LOC107430112 isoform X1 OS=Ziziphus jujuba OX=326968 GN=LOC107430112 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.1e-28
Identity = 60/86 (69.77%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 1  MAAWMAAPRRIVLSHNSLSTPQIVSLTHRRGLAGAGDHHGPPKVNFWEDPFNPSRWKGEH 60
          +AA  AA    + S  S ST Q  SL HRRGLAG GDHHGPPKVNFW+DP NPS+WK EH
Sbjct: 6  LAARQAANLLRLSSPKSASTAQAASLVHRRGLAGGGDHHGPPKVNFWQDPLNPSKWKEEH 65

Query: 61 FVIVSLTGWGLVLYGAYDFFTKGKKE 87
          FVIVSLTGWGL+LYG Y +FTKGKK+
Sbjct: 66 FVIVSLTGWGLLLYGGYKYFTKGKKD 91

[Close]

BLAST of Chy6G122500 vs. ExPASy TrEMBL
Match: A0A2C9W6M2 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G116100 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 9.0e-28
Identity = 59/92 (64.13%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 1  MAAWMAAPRRI-----VLSHNSLSTPQIVSLTHRRGLAGAGDHHGPPKVNFWEDPFNPSR 60
          MAAW AA R+      + S    S PQ  SL HRRGLAG GDHHGPPKVNFW+DP +PS+
Sbjct: 1  MAAWTAAARQAGNITRLSSPRVASAPQAASLIHRRGLAGGGDHHGPPKVNFWQDPMSPSK 60

Query: 61 WKGEHFVIVSLTGWGLVLYGAYDFFTKGKKEE 88
          WK EHFVIVSLTGWGL+ +G Y FFT+GKK++
Sbjct: 61 WKEEHFVIVSLTGWGLLFFGGYKFFTRGKKDK 92

[Close]

BLAST of Chy6G122500 vs. NCBI nr
Match: KAE8650170.1 (hypothetical protein Csa_010956 [Cucumis sativus])

HSP 1 Score: 195 bits (495), Expect = 7.48e-63
Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MAAWMAAPRRIVLSHNSLSTPQIVSLTHRRGLAGAGDHHGPPKVNFWEDPFNPSRWKGEH 60
          MAAWMAAPRRI+LSHNSLSTPQI SLTHRRGLAG GDHHGPPKVNFWEDPFNPSRWK EH
Sbjct: 1  MAAWMAAPRRILLSHNSLSTPQIASLTHRRGLAGGGDHHGPPKVNFWEDPFNPSRWKREH 60

Query: 61 FVIVSLTGWGLVLYGAYDFFTKGKKEEVWLF 91
          FVIVSLTGWGLVLYGAYDFFTKGKKEEVWLF
Sbjct: 61 FVIVSLTGWGLVLYGAYDFFTKGKKEEVWLF 91

[Close]

BLAST of Chy6G122500 vs. NCBI nr
Match: KAA0046869.1 (hypothetical protein E6C27_scaffold230G00240 [Cucumis melo var. makuwa] >TYK03277.1 hypothetical protein E5676_scaffold298G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (450), Expect = 1.17e-55
Identity = 79/87 (90.80%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 1  MAAWMAAPRRIVLSHNSLSTPQIVSLTHRRGLAGAGDHHGPPKVNFWEDPFNPSRWKGEH 60
          MAAW AA RRIVLSHNS+STPQ  SL HRRGLAG  DHHGPPKVNFWEDPFNPSRWKGEH
Sbjct: 1  MAAWTAAARRIVLSHNSVSTPQFASLKHRRGLAGGADHHGPPKVNFWEDPFNPSRWKGEH 60

Query: 61 FVIVSLTGWGLVLYGAYDFFTKGKKEE 87
          FVIVSLTGWGLVLYGAYDFFTKGKKEE
Sbjct: 61 FVIVSLTGWGLVLYGAYDFFTKGKKEE 87

[Close]

BLAST of Chy6G122500 vs. NCBI nr
Match: XP_015896402.1 (uncharacterized protein LOC107430112 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 134 bits (338), Expect = 9.31e-39
Identity = 60/87 (68.97%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 1  MAAWMAAPRRIVLSHNSLSTPQIVSLTHRRGLAGAGDHHGPPKVNFWEDPFNPSRWKGEH 60
          +AA  AA    + S  S ST Q  SL HRRGLAG GDHHGPPKVNFW+DP NPS+WK EH
Sbjct: 6  LAARQAANLLRLSSPKSASTAQAASLVHRRGLAGGGDHHGPPKVNFWQDPLNPSKWKEEH 65

Query: 61 FVIVSLTGWGLVLYGAYDFFTKGKKEE 87
          FVIVSLTGWGL+LYG Y +FTKGKK+ 
Sbjct: 66 FVIVSLTGWGLLLYGGYKYFTKGKKDN 92

[Close]

BLAST of Chy6G122500 vs. NCBI nr
Match: XP_021684587.1 (uncharacterized protein LOC110667905 [Hevea brasiliensis])

HSP 1 Score: 134 bits (337), Expect = 1.32e-38
Identity = 61/92 (66.30%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 1  MAAWMAAPRRI-----VLSHNSLSTPQIVSLTHRRGLAGAGDHHGPPKVNFWEDPFNPSR 60
          MAAW AA R+      + S    S PQ VSL HRRGLAG GDHHGPPKVNFW+DP NPS+
Sbjct: 1  MAAWTAAARQAANLTTLSSPRVASAPQAVSLIHRRGLAGGGDHHGPPKVNFWQDPLNPSK 60

Query: 61 WKGEHFVIVSLTGWGLVLYGAYDFFTKGKKEE 87
          WK EHFVIVSLTGWGL+ YG Y FFT  KK++
Sbjct: 61 WKEEHFVIVSLTGWGLLFYGGYKFFTGDKKDK 92

[Close]

BLAST of Chy6G122500 vs. NCBI nr
Match: XP_015896395.1 (uncharacterized protein LOC107430112 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 134 bits (338), Expect = 1.56e-38
Identity = 60/87 (68.97%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 1  MAAWMAAPRRIVLSHNSLSTPQIVSLTHRRGLAGAGDHHGPPKVNFWEDPFNPSRWKGEH 60
          +AA  AA    + S  S ST Q  SL HRRGLAG GDHHGPPKVNFW+DP NPS+WK EH
Sbjct: 6  LAARQAANLLRLSSPKSASTAQAASLVHRRGLAGGGDHHGPPKVNFWQDPLNPSKWKEEH 65

Query: 61 FVIVSLTGWGLVLYGAYDFFTKGKKEE 87
          FVIVSLTGWGL+LYG Y +FTKGKK+ 
Sbjct: 66 FVIVSLTGWGLLLYGGYKYFTKGKKDN 92

[Close]

BLAST of Chy6G122500 vs. TAIR 10
Match: AT2G20820.1 (unknown protein; Has 44 Blast hits to 44 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 90.1 bits (222), Expect = 9.9e-19
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 25 SLTHRRGLAGAGDHHGPPKVNFWEDPFNPSRWKGEHFVIVSLTGWGLVLYGAYDFFTKGK 84
          S+  RR LAGA DHHG  KV+FW+ P NP  WK EHFV++SL+GWGL+ Y  Y   T GK
Sbjct: 25 SIGQRRCLAGAADHHGSTKVDFWKQPTNPGNWKEEHFVLISLSGWGLLFYSGYKLATGGK 84

Query: 85 KE 87
          KE
Sbjct: 85 KE 86

[Close]

BLAST of Chy6G122500 vs. TAIR 10
Match: AT2G20820.2 (unknown protein; Has 36 Blast hits to 36 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-08
Identity = 22/38 (57.89%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 25 SLTHRRGLAGAGDHHGPPKVNFWEDPFNPSRWKGEHFV 63
          S+  RR LAGA DHHG  KV+FW+ P NP  WK EH++
Sbjct: 25 SIGQRRCLAGAADHHGSTKVDFWKQPTNPGNWKEEHWI 62

The following BLAST results are available for this feature:

BLAST of Chy6G122500 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G122500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L362	1.2e-43	95.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G099740 PE=4 SV=1	[more]
A0A5A7U055	4.2e-41	90.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6P4AKA6	4.1e-28	69.77	uncharacterized protein LOC107430112 isoform X2 OS=Ziziphus jujuba OX=326968 GN=...	[more]
A0A6P4BBQ1	4.1e-28	69.77	uncharacterized protein LOC107430112 isoform X1 OS=Ziziphus jujuba OX=326968 GN=...	[more]
A0A2C9W6M2	9.0e-28	64.13	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G116100 PE=4 SV=...	[more]

BLAST of Chy6G122500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650170.1	7.48e-63	95.60	hypothetical protein Csa_010956 [Cucumis sativus]	[more]
KAA0046869.1	1.17e-55	90.80	hypothetical protein E6C27_scaffold230G00240 [Cucumis melo var. makuwa] >TYK0327...	[more]
XP_015896402.1	9.31e-39	68.97	uncharacterized protein LOC107430112 isoform X2 [Ziziphus jujuba]	[more]
XP_021684587.1	1.32e-38	66.30	uncharacterized protein LOC110667905 [Hevea brasiliensis]	[more]
XP_015896395.1	1.56e-38	68.97	uncharacterized protein LOC107430112 isoform X1 [Ziziphus jujuba]	[more]

BLAST of Chy6G122500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20820.1	9.9e-19	59.68	unknown protein; Has 44 Blast hits to 44 proteins in 13 species: Archae - 0; Bac...	[more]
AT2G20820.2	1.2e-08	57.89	unknown protein; Has 36 Blast hits to 36 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35292:SF8	SUBFAMILY NOT NAMED	coord: 5..86
None	No IPR available	PANTHER	PTHR35292	EXPRESSED PROTEIN	coord: 5..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G122500.1	Chy6G122500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane