Chy6G122470 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G122470
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH06: 20075290 .. 20075722 (+)
RNA-Seq Expression	Chy6G122470
Synteny	Chy6G122470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACATCTACAACAAATCCAACATATATACTCCAAAAGATAATACAACCCCATTGGAAACAGCAACATAGAAGAGCGAGGGTTGCCAAAAACAAAATCGGAACTAGGGCGGCGGCGGCTGCTGAAAATCCGTCACGTGGGGGTGGGGGCTGCTCACCGACGTTCAATGACTGAAGAAAATGGAACGATCGGGCCTCACCAGCATTCGGTGCCAGAAGAAAATGTAACAGTGGGGCAGAAAGCGGCAAAGAAACGCGGGTGGCCGCTCATCGGCGTCCGATGCGAGAAGAACGTGGGAGGGAGCTCGTGGTGTTCTGTGGAGAAGAAAAGAAGATTAGGGGTGGGGGTTTGTTCTGCCGAAAAGAAAATGGGGGAGGGAGGGGAAGGGTTTGTGAGAGAGGGAAAAATGTGGGGAAAGGGAGGGAGAAAA

mRNA sequence

ATGGCTACATCTACAACAAATCCAACATATATACTCCAAAAGATAATACAACCCCATTGGAAACAGCAACATAGAAGAGCGAGGGTTGCCAAAAACAAAATCGGAACTAGGGCGGCGGCGGCTGCTGAAAATCCGTCACGTGGGGGTGGGGGCTGCTCACCGACGTTCAATGACTGAAGAAAATGGAACGATCGGGCCTCACCAGCATTCGGTGCCAGAAGAAAATGTAACAGTGGGGCAGAAAGCGGCAAAGAAACGCGGGTGGCCGCTCATCGGCGTCCGATGCGAGAAGAACGTGGGAGGGAGCTCGTGGTGTTCTGTGGAGAAGAAAAGAAGATTAGGGGTGGGGGTTTGTTCTGCCGAAAAGAAAATGGGGGAGGGAGGGGAAGGGTTTGTGAGAGAGGGAAAAATGTGGGGAAAGGGAGGGAGAAAA

Coding sequence (CDS)

ATGGCTACATCTACAACAAATCCAACATATATACTCCAAAAGATAATACAACCCCATTGGAAACAGCAACATAGAAGAGCGAGGGTTGCCAAAAACAAAATCGGAACTAGGGCGGCGGCGGCTGCTGAAAATCCGTCACGTGGGGGTGGGGGCTGCTCACCGACGTTCAATGACTGAAGAAAATGGAACGATCGGGCCTCACCAGCATTCGGTGCCAGAAGAAAATGTAACAGTGGGGCAGAAAGCGGCAAAGAAACGCGGGTGGCCGCTCATCGGCGTCCGATGCGAGAAGAACGTGGGAGGGAGCTCGTGGTGTTCTGTGGAGAAGAAAAGAAGATTAGGGGTGGGGGTTTGTTCTGCCGAAAAGAAAATGGGGGAGGGAGGGGAAGGGTTTGTGAGAGAGGGAAAAATGTGGGGAAAGGGAGGGAGAAAA

Protein sequence

MATSTTNPTYILQKIIQPHWKQQHRRARVAKNKIGTRAAAAAENPSRGGGGCSPTFND*RKWNDRASPAFGARRKCNSGAESGKETRVAAHRRPMREERGRELVVFCGEEKKIRGGGLFCRKENGGGRGRVCERGKNVGKGREKX

Homology

[Close]

BLAST of Chy6G122470 vs. ExPASy TrEMBL
Match: A0A0A0KVM8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G098210 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.3e-08
Identity = 60/148 (40.54%), Postives = 77/148 (52.03%), Query Frame = 0


Query: 1   MATSTTNPTYILQKIIQPHWKQQHRRARVAKNKIGTRAAAAAENPSRGGGGCSPTFND*R 60
           MATSTTN   ILQKIIQPHWKQQHR  RV +NKIG       +      G  +  ++   
Sbjct: 1   MATSTTNLRCILQKIIQPHWKQQHRIERVVENKIGRGRRWLLKIRHLEVG--ATHWHSMT 60

Query: 61  KWNDRASPAFGARRKCNSGAESGKETRVAAHRR-----PMREERGRELVVFCGEEKKIR- 120
           K N    P      +C+   E+    + A  +R      +R E+     ++C  EKK R 
Sbjct: 61  KENRTMGP-----HRCSVPEENETMGQKATKKRGWPFTGVRCEKNVGGSLWCSMEKKRRL 120

Query: 121 GGGLFCRKENGGGRGRVCERGKNVGKGR 143
             G+   ++ GGGRGRVCERGK  GKGR
Sbjct: 121 RVGVCSAEKRGGGRGRVCERGKMWGKGR 141

[Close]

BLAST of Chy6G122470 vs. NCBI nr
Match: KAE8649286.1 (hypothetical protein Csa_015388 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.22e-13
Identity = 62/150 (41.33%), Postives = 79/150 (52.67%), Query Frame = 0


Query: 1   MATSTTNPTYILQKIIQPHWKQQHRRARVAKNKIGT--RAAAAAENPSRGGGGCSPTFND 60
           MATSTTN   ILQKIIQPHWKQQHR  RVA+NKIG   R      +   G    +  ++ 
Sbjct: 1   MATSTTNLRCILQKIIQPHWKQQHRIERVAENKIGRGRRWLLKIRHLEVG----ATHWHS 60

Query: 61  *RKWNDRASPAFGARRKCNSGAESGKETRVAAHRRP-----MREERGRELVVFCGEEKKI 120
             K N    P      +C+   E+    + A  +R      +R E+     ++C  EKK 
Sbjct: 61  MTKENRTMGP-----HRCSVPEENETMGQKATKKRGWPFTGVRCEKNVGGSLWCSMEKKR 120

Query: 121 R-GGGLFCRKENGGGRGRVCERGKNVGKGR 142
           R   G+   ++ GGGRGRVCERGK  GKGR
Sbjct: 121 RLRVGVCSAEKRGGGRGRVCERGKMWGKGR 141

The following BLAST results are available for this feature:

BLAST of Chy6G122470 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G122470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVM8	3.3e-08	40.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G098210 PE=4 SV=1	[more]

BLAST of Chy6G122470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649286.1	2.22e-13	41.33	hypothetical protein Csa_015388 [Cucumis sativus]	[more]

BLAST of Chy6G122470 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G122470.1	Chy6G122470.1	mRNA