Chy6G122110 (gene) Cucumber (hystrix) v1

Overview
NameChy6G122110
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH06: 19417325 .. 19421074 (-)
RNA-Seq ExpressionChy6G122110
SyntenyChy6G122110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCTTCCTCTTCTTCAGTCATGGCCATCATTTCCCACTCTCGCACTTCACCACTCATTAACAGAGAAGGCACATGTGGGAGGGTCACCAGTTGGGGAAAAGAAATTGAACCCAAGAACGTGATGAACAGGTGAAGAAATTCCTATTTTATTGATGTAACTTTCAACTTTTGCCAACGGCGGAATAGTGTGATTGCTTTTTGTTTCTTGTTTTTCTTGTTTTTTTCAATTTTTCTTTTTGTTTGATTTCGGACATCGAGGAATTCTTTTGCTTGATTGTTGGGAAAGTAAAAGGATGCTTGAGTGTGGGGACTTAGATAGGAAAGAAAAGGGGAAAATATATGCTTCAATCTATTTTCAACCTCTTCTTTATTGTGTTTTCTTTTCATGGGGCCCTTCACTTTTTCAAAAAAAAATGTCTTACATGGAATTGGGAACTTGGTTTTTCTCTCTTTTTCTGTTGTGCCCTTTTGGATGAAATTAAATTTATTGTCTATTTAGTGAAGAAAGTAATGAACCGCATCTCAAACCCCATCAAATCTTGTTCTGATGAGCCATTTGTCTTCCTATGATTTATGATTTTTTTTTATATCAGTAAGTTTCTAGGTCAGCATCAACTCATCGCCCAGGGCACTCTAATATTTGGGTGTTAAGAAAATTTACAAGATGTTAAATTCCAAGTGGATTGAACCATCACCTCTTAGCTCTGAGTGTTGGTTTCCTTTCTTTGCTTGTTTTAGCTTTCGAAGAGTGGGGCAAATTTTGTTCTATTTGTGTGACTTTTTGTGGCCTGGTGTTAGGCACTTTATGTGTTTGAGCCTCAGTCAACAAACGGATGATTCTCTTAACATTTGGGTCAATTTTTTAGCCGAAACAAATGTATGTTGTTTTAAAATTTACTAGTTGGTTTTAAACTAATAGGATTTCGATGTCTTTATCAGACATGGTGATTGTTCTGTTGACAAAAAGATTTCAATCAATGCATTTTAGGCAGAAGAACCGCATATGTGTTGTAATTATTACAGTTTTCTTTTCCACAACACTTTGATTTCTTTGGTAAGGAGAGAAGTCTTTGCTTAACATTTTTGATTCCTTCATATCAGGTGGATTGTAAATTTGTAATGTATTAAAATATCACAATATCTTTATAAAAAAATTAACACAAAAAATACAATAAAATAGAACTGGTCTGTAAGTACGGGTTAACCGTACAAAAAACCCCTCAATGGTGCCAGGCAAAGACTTGGGGAGGAATTAGGAATGATGGAGGAAGGAGATGCAAAATGCCCCCTCATAGTCCAACTTAGATTTTGAAATTTTCTCTCATTTTATCCCCGAAAATTTCAAAATCAAAAGAGTATATTTTTTAAATGCTTAAATTGCAATTTTTTTCCCTTTGTTAAGAAATTTCTTACCCTTGTACTCTGTGTTTGGTGACATGCTCTAAAAGATCGCGTGTTAAAGCCACCAACTTAAATTAATGAAGATAAAGTTGAAAACATTGGTAGTAATCTTCAAGATTTGGCTGAGATGTTTGGAGATACCCTCCGATGTCTCGAGGACTAGAAAACTTAATAACGTGAAACTCTTCTTTGTATTTTAAAGCTAGCTTTCGGGGAGGCAAAGCCTCTCTAAAGATTAGTGGGAGGTGAGCATATGCACAATATGAGTGGAGCCCACAATACCCAGTTGTTAAAAAAATTAAATTAAAGTAATAAAGAAAAACTGATGGTATGGTTTAATTACTTTAACACATTAAACTTGCAGGTGGTACAGCAAATGGCTTTAGTGTTTCTGACAAAAGTTATGGGTTCCTCTCAACAGGCTATGTGAAGAGGAGAGATATATGAGGAATAATTGTGGTCTACATCACATTCTTTCCAACCGCTGCTCTTTTTTGCTACCAAACCATTTTCTTTCTTCTCTTGAATTATATGGATGTGCTTGTGCTTGGTACAGCATAGCTGTAAGGTGAGCAAAACATTATTCTCTTCTGTTTCTCTTTATTATGTTGTTTTTTATCTTTATATTCTTTCTCTGAAGGAATAATTTGCTACCTATTTTTTTTTTTTTCTCTTTTCATTCTTTTTGATAGAAAATGGTTACACAAACAAGACATGCCTTCACTTTGGGCCAAACTTTTGTTTTGCTTAAATTAATATATCAATATCATGACTGCTTTTTGTATTCTTTTTCCTTTCATCTGATTTCATGGTGTTTTTATATGAGATTGTGTGAGATTTGCTACCCTCCCCATGATGACATATGAAGGGACTTATTCAGATTGAACTTATTCAATACTTATTCATTATGTATTGAAGAATTTCAAAATGTATTTTTAGGCTAAAAGGTCTGTAAAGAAAACTTGAGAAATTTTTAGTGTTACTCTCATTTCAAGAATTTTTTTTAACAGCCATAGCATAGTGACCAGTTCTAATAATGTCTCCATAAAAACCAGTATCACAGAATCATTAATTATATCAAAGCAAAGCATATAGTTTATCTTTGTTTCCTCTTCTTCTCTGTCCGTAAATATGGATGAAGAATCATTATTGAGGTAAAAGTAATGGTTCTGAGTATGGGTTAGTGCATACAATTTGATTCAATGTTATCTTTGAAATTTAGGAGATGATCTAAATGGGGCAGGCTGTAAAACCTCCTCCAACTTCCTAAACACCTTTAGTTACCTCACCCATGGTGACTGGGTTTAGTTTAGGCTAAAATCTAAATGAGATTTATTTCTTTTAAAATGTGGAAACTTTTTGCAATTACCAATGAGCCCCTATTTTGGCTTCCCAGACAGGGAGGGCCATTATTTTGCTTTCTTAAAGTTTGTTGCTTCAGACAAAGTATAGTATTCACTAAGCTAGGCATCGCAATTTAATGAAAAAAGGTGTAGTAATCAAATTATAATCAACTCTTTTCCCATTTATTTTATTTTTCTATAGTGGAAAGTGTGAGTTGGTGCGGGTTGGATGCTTTCTTTATTAAATAATGGTTTGAGAAAAATAGATGTCTTGTTTTTTCATGACAGGTTAGCTATGGAATTGGAAGTATTGGATGCAAACTATCCCTCAAAACTAAATAAAAACTTTAGATGCTCTTAAGCGACTGAGTAGCTTATAACAGATGGTTTTCATTGTTTTTGATATCGTGCCATCAGAATATAACTAACTGCCATCACAGAGGATCTTGGACTTCTTCATCCTCGTCCATTTGCTTCCGTAAGTTCTTGCTTTTTGTTTATTATTCTCTTCACACTCTTATTTTAAAACTTCCACACAAACAACACCCGCCCCCCGCCCCTCCTTACCTGAACGAGGGGAGGCCTCGGTATCTTAATCATTGAAGCATGTACATTTTGGGAAAACAAAAAACATTGCAAGTTCCTTTTCTGTATTTAGCTGAAGATGTAAACAAAGATAAGACAAAGAGCCACCTTCCCCCACCTGTGACTCCATATTGTGTGTGCATGTGTGTGGTGTCACCTTTTAGTTTTTTCGAAGTCGTTATGAAAGTTTTAAACTTTTCTAATTTGCCCCTTCCTGCTTTAGTACAATTGACTTTATAAGATTTTTGCCCTCCTTATAACAAAATTTGCGGCTCGGCCTTGGAGATCGGATTCAAATAAGAACATGCTGAGAAAATGAGTTTCTTTTCAGGGCTAAGGGGCCATCGGCATTACATTCTTATGTAGAACCCATTTTCATCAGCATCATTTTTGTTCCAAGCAAATCATTCGGTTGA

mRNA sequence

ATGAAACCTTCCTCTTCTTCAGTCATGGCCATCATTTCCCACTCTCGCACTTCACCACTCATTAACAGAGAAGGCACATGTGGGAGGGTCACCAGTTGGGGAAAAGAAATTGAACCCAAGAACGTGATGAACAGGCTATGTGAAGAGGAGAGATATATGAGGAATAATTGTGGTCTACATCACATTCTTTCCAACCGCTGCTCTTTTTTGCTACCAAACCATTTTCTTTCTTCTCTTGAATTATATGGATGTGCTTGTGCTTGGTACAGCATAGCTGTAAGTGGAAAGTGTGAGTTGGTGCGGGTTAGCTATGGAATTGGAAATGTAAACAAAGATAAGACAAAGAGCCACCTTCCCCCACCTGTGACTCCATATTGTGTGTGCATGGCTAAGGGGCCATCGGCATTACATTCTTATGTAGAACCCATTTTCATCAGCATCATTTTTGTTCCAAGCAAATCATTCGGTTGA

Coding sequence (CDS)

ATGAAACCTTCCTCTTCTTCAGTCATGGCCATCATTTCCCACTCTCGCACTTCACCACTCATTAACAGAGAAGGCACATGTGGGAGGGTCACCAGTTGGGGAAAAGAAATTGAACCCAAGAACGTGATGAACAGGCTATGTGAAGAGGAGAGATATATGAGGAATAATTGTGGTCTACATCACATTCTTTCCAACCGCTGCTCTTTTTTGCTACCAAACCATTTTCTTTCTTCTCTTGAATTATATGGATGTGCTTGTGCTTGGTACAGCATAGCTGTAAGTGGAAAGTGTGAGTTGGTGCGGGTTAGCTATGGAATTGGAAATGTAAACAAAGATAAGACAAAGAGCCACCTTCCCCCACCTGTGACTCCATATTGTGTGTGCATGGCTAAGGGGCCATCGGCATTACATTCTTATGTAGAACCCATTTTCATCAGCATCATTTTTGTTCCAAGCAAATCATTCGGTTGA

Protein sequence

MKPSSSSVMAIISHSRTSPLINREGTCGRVTSWGKEIEPKNVMNRLCEEERYMRNNCGLHHILSNRCSFLLPNHFLSSLELYGCACAWYSIAVSGKCELVRVSYGIGNVNKDKTKSHLPPPVTPYCVCMAKGPSALHSYVEPIFISIIFVPSKSFG*
Homology
[Close]
BLAST of Chy6G122110 vs. ExPASy TrEMBL
Match: A0A6J1C3J3 (uncharacterized protein LOC111008157 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008157 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 9.4e-17
Identity = 58/118 (49.15%), Postives = 60/118 (50.85%), Query Frame = 0 

Query: 29  RVTSWGKEIEPKNVMNRLCEEERYMRNNCGLHHILSNRCSFLLPNHFLSSLELYGCACAW 88
           R    GK  E  NVM RL EEERYMRNNCGLHHILS  CSFL P HFLSSLE YG  CAW
Sbjct: 11  RAKEGGKRTEATNVMKRLFEEERYMRNNCGLHHILSYLCSFLPPTHFLSSLESYG--CAW 70

Query: 89  YSIAVSGKCELVRVSYGIGNVNKDKTKSHLPPPVTPYCVCMAKGPSALHSYVEPIFIS 147
           YSIAV                                    A+    +HSYVE IFIS
Sbjct: 71  YSIAV-----------------------------------RARNQQQIHSYVEAIFIS 91

[Close]
BLAST of Chy6G122110 vs. NCBI nr
Match: KAE8650182.1 (hypothetical protein Csa_009985 [Cucumis sativus])

HSP 1 Score: 315 bits (806), Expect = 3.39e-108
Identity = 150/156 (96.15%), Postives = 151/156 (96.79%), Query Frame = 0 

Query: 1   MKPSSSSVMAIISHSRTSPLINREGTCGRVTSWGKEIEPKNVMNRLCEEERYMRNNCGLH 60
           MKPSSSS MAIISHSRTSP INREGTCGRVTSWGKEIEPKNVMNRLCEEERYMRNNCGLH
Sbjct: 1   MKPSSSSAMAIISHSRTSPHINREGTCGRVTSWGKEIEPKNVMNRLCEEERYMRNNCGLH 60

Query: 61  HILSNRCSFLLPNHFLSSLELYGCACAWYSIAVSGKCELVRVSYGIGNVNKDKTKSHLPP 120
           HILSN CSFLLPNHFLSSLELYGCACAWYSIAVSGKCELVRVSYGIGNVNKDKTKSHLPP
Sbjct: 61  HILSNLCSFLLPNHFLSSLELYGCACAWYSIAVSGKCELVRVSYGIGNVNKDKTKSHLPP 120

Query: 121 PVTPYCVCMAKGPSALHSYVEPIFISIIFVPSKSFG 156
           PVTPYCVCMAK PSALHSYVEPIFISI FVPSK+FG
Sbjct: 121 PVTPYCVCMAKEPSALHSYVEPIFISITFVPSKAFG 156

[Close]
BLAST of Chy6G122110 vs. NCBI nr
Match: XP_031739301.1 (uncharacterized protein LOC101206733 isoform X2 [Cucumis sativus])

HSP 1 Score: 191 bits (484), Expect = 1.11e-59
Identity = 92/99 (92.93%), Postives = 92/99 (92.93%), Query Frame = 0 

Query: 1  MKPSSSSVMAIISHSRTSPLINREGTCGRVTSWGKEIEPKNVMNRLCEEERYMRNNCGLH 60
          MKPSSSS MAIISHSRTSP INREGTCGRVTSWGKEIEPKNVMNRLCEEERYMRNNCGLH
Sbjct: 1  MKPSSSSAMAIISHSRTSPHINREGTCGRVTSWGKEIEPKNVMNRLCEEERYMRNNCGLH 60

Query: 61 HILSNRCSFLLPNHFLSSLELYGCACAWYSIAVSGKCEL 99
          HILSN CSFLLPNHFLSSLELYGCACAWYSIAV    EL
Sbjct: 61 HILSNLCSFLLPNHFLSSLELYGCACAWYSIAVRLAMEL 99

[Close]
BLAST of Chy6G122110 vs. NCBI nr
Match: XP_022136451.1 (uncharacterized protein LOC111008157 isoform X2 [Momordica charantia])

HSP 1 Score: 97.8 bits (242), Expect = 2.89e-23
Identity = 58/118 (49.15%), Postives = 60/118 (50.85%), Query Frame = 0 

Query: 29  RVTSWGKEIEPKNVMNRLCEEERYMRNNCGLHHILSNRCSFLLPNHFLSSLELYGCACAW 88
           R    GK  E  NVM RL EEERYMRNNCGLHHILS  CSFL P HFLSSLE YGCA  W
Sbjct: 11  RAKEGGKRTEATNVMKRLFEEERYMRNNCGLHHILSYLCSFLPPTHFLSSLESYGCA--W 70

Query: 89  YSIAVSGKCELVRVSYGIGNVNKDKTKSHLPPPVTPYCVCMAKGPSALHSYVEPIFIS 146
           YSIAV                                    A+    +HSYVE IFIS
Sbjct: 71  YSIAVR-----------------------------------ARNQQQIHSYVEAIFIS 91

The following BLAST results are available for this feature:
BLAST of Chy6G122110 vs.
Match NameE-valueIdentityDescription
BLAST of Chy6G122110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C3J39.4e-1749.15uncharacterized protein LOC111008157 isoform X2 OS=Momordica charantia OX=3673 G... [more]
BLAST of Chy6G122110 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650182.13.39e-10896.15hypothetical protein Csa_009985 [Cucumis sativus][more]
XP_031739301.11.11e-5992.93uncharacterized protein LOC101206733 isoform X2 [Cucumis sativus][more]
XP_022136451.12.89e-2349.15uncharacterized protein LOC111008157 isoform X2 [Momordica charantia][more]
BLAST of Chy6G122110 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy6G122110.1Chy6G122110.1mRNA