Chy6G122020 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G122020
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Girdin-like
Location	chrH06: 19281625 .. 19282034 (-)
RNA-Seq Expression	Chy6G122020
Synteny	Chy6G122020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTTTGGGACCCAACATATCCAAGGAAGGAGACTTGTGTGTCTTTCTTTTCAACAATGAGTTCTGAAAATGTCATATGAAAGGCTCAATGGATGCCATTGAAGGCGGTGATTTATAGATGTGGAGATGTTCATAGTGTGCCTTTGTTGGGACCATGAGGGGTGTTAACTATACAACATTTTTAGTTTTGCGTTAGGTATGGCTGAAACAGTTTATACCACTAACTCATAATCTACAAGACTCTGACTTTTCATACGATCTTGAAGATTGTCATGGAAAAAAACGTTGAGCAGTATATGTATGGAAATCTATGAGGAAGATAAAAGACAAAGGACACTATGAAGGAGTTACCAGTGGATACGAGGCATGGCAGGCAAACAGAATGAAGAATGTAATAGATACCTTA

mRNA sequence

ATGGCAGTTTGGGACCCAACATATCCAAGGAAGGAGACTTGTGTGTCTTTCTTTTCAACAATGAGTTCTGAAAATGTCATATGAAAGGCTCAATGGATGCCATTGAAGGCGGTGATTTATAGATGTGGAGATGTTCATAGTGTGCCTTTGTTGGGACCATGAGGGGTGTTAACTATACAACATTTTTAGTTTTGCGTTAGGTATGGCTGAAACAGTTTATACCACTAACTCATAATCTACAAGACTCTGACTTTTCATACGATCTTGAAGATTGTCATGGAAAAAAACGTTGAGCAGTATATGTATGGAAATCTATGAGGAAGATAAAAGACAAAGGACACTATGAAGGAGTTACCAGTGGATACGAGGCATGGCAGGCAAACAGAATGAAGAATGTAATAGATACCTTA

Coding sequence (CDS)

ATGGCAGTTTGGGACCCAACATATCCAAGGAAGGAGACTTGTGTGTCTTTCTTTTCAACAATGAGTTCTGAAAATGTCATATGAAAGGCTCAATGGATGCCATTGAAGGCGGTGATTTATAGATGTGGAGATGTTCATAGTGTGCCTTTGTTGGGACCATGAGGGGTGTTAACTATACAACATTTTTAGTTTTGCGTTAGGTATGGCTGAAACAGTTTATACCACTAACTCATAATCTACAAGACTCTGACTTTTCATACGATCTTGAAGATTGTCATGGAAAAAAACGTTGAGCAGTATATGTATGGAAATCTATGAGGAAGATAAAAGACAAAGGACACTATGAAGGAGTTACCAGTGGATACGAGGCATGGCAGGCAAACAGAATGAAGAATGTAATAGATACCTTA

Protein sequence

MAVWDPTYPRKETCVSFFSTMSSENVI*KAQWMPLKAVIYRCGDVHSVPLLGP*GVLTIQHF*FCVRYG*NSLYH*LIIYKTLTFHTILKIVMEKNVEQYMYGNL*GR*KTKDTMKELPVDTRHGRQTE*RM**IPX

Homology

[Close]

BLAST of Chy6G122020 vs. ExPASy TrEMBL
Match: A0A5D3BYI1 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00630 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1   MAVWDPTYPRKETCVSFFSTMSSENVI*KAQWMPLKAVIYRCGDVHSVPLLGP*G 56
           MAVWDPTYPRKE  +SFF+ ++SENVI KAQWMPLKAVIYRCGD HSVPLLGP G
Sbjct: 77  MAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWG 131

[Close]

BLAST of Chy6G122020 vs. ExPASy TrEMBL
Match: A0A5D3DBS6 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00960 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1  MAVWDPTYPRKETCVSFFSTMSSENVI*KAQWMPLKAVIYRCGDVHSVPLLGP*G 56
          MAVWDPTYPRKE  +SFF+ ++SENVI KAQWMPLKAVIYRCGD HSVPLLGP G
Sbjct: 1  MAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPRG 55

[Close]

BLAST of Chy6G122020 vs. ExPASy TrEMBL
Match: A0A5A7T5S7 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1   MAVWDPTYPRKETCVSFFSTMSSENVI*KAQWMPLKAVIYRCGDVHSVPLLGP*G 56
           MAVWDPTYPRKE  +SFF+ ++SENVI KAQWMPLKAVIYRCGD HSVPLLGP G
Sbjct: 266 MAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWG 320

[Close]

BLAST of Chy6G122020 vs. ExPASy TrEMBL
Match: A0A5A7T642 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00350 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1   MAVWDPTYPRKETCVSFFSTMSSENVI*KAQWMPLKAVIYRCGDVHSVPLLGP*G 56
           MAVWDPTYPRKE  +SFF+ ++SENVI KAQWMPLKAVIYRCGD HSVPLLGP G
Sbjct: 77  MAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPCG 131

[Close]

BLAST of Chy6G122020 vs. ExPASy TrEMBL
Match: A0A5A7T1W2 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00060 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1   MAVWDPTYPRKETCVSFFSTMSSENVI*KAQWMPLKAVIYRCGDVHSVPLLGP*G 56
           MAVWDPTYPRKE  +SFF+ ++SENVI KAQWMPLKAVIYRCGD HSVPLLGP G
Sbjct: 245 MAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWG 299

[Close]

BLAST of Chy6G122020 vs. NCBI nr
Match: TYK20948.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 3.27e-25
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1  MAVWDPTYPRKETCVSFFSTMSSENVI*KAQWMPLKAVIYRCGDVHSVPLLGP*G 55
          MAVWDPTYPRKE  +SFF+ ++SENVI KAQWMPLKAVIYRCGD HSVPLLGP G
Sbjct: 1  MAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPRG 55

[Close]

BLAST of Chy6G122020 vs. NCBI nr
Match: KAA0046902.1 (girdin-like [Cucumis melo var. makuwa] >TYK03246.1 girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 8.00e-24
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1   MAVWDPTYPRKETCVSFFSTMSSENVI*KAQWMPLKAVIYRCGDVHSVPLLGP*G 55
           MAVWDPTYPRKE  +SFF+ ++SENVI KAQWMPLKAVIYRCGD HSVPLLGP G
Sbjct: 77  MAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWG 131

[Close]

BLAST of Chy6G122020 vs. NCBI nr
Match: XP_031739496.1 (uncharacterized protein LOC116403043 [Cucumis sativus])

HSP 1 Score: 104 bits (260), Expect = 8.11e-24
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1   MAVWDPTYPRKETCVSFFSTMSSENVI*KAQWMPLKAVIYRCGDVHSVPLLGP*G 55
           MAVW+PTYP+KET VSFFST+SSE+VI KAQWMPLKAVIYRCGD HSVPLLGP G
Sbjct: 116 MAVWNPTYPKKETWVSFFSTLSSEDVIWKAQWMPLKAVIYRCGDFHSVPLLGPWG 170

[Close]

BLAST of Chy6G122020 vs. NCBI nr
Match: XP_031740432.1 (uncharacterized protein LOC116403430 [Cucumis sativus])

HSP 1 Score: 104 bits (260), Expect = 1.20e-23
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1   MAVWDPTYPRKETCVSFFSTMSSENVI*KAQWMPLKAVIYRCGDVHSVPLLGP*G 55
           MAVW+PTYP+KET VSFFST+SSE+VI KAQWMPLKAVIYRCGD HSVPLLGP G
Sbjct: 115 MAVWNPTYPKKETWVSFFSTLSSEDVIWKAQWMPLKAVIYRCGDFHSVPLLGPWG 169

[Close]

BLAST of Chy6G122020 vs. NCBI nr
Match: KAA0036955.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 1.23e-23
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1   MAVWDPTYPRKETCVSFFSTMSSENVI*KAQWMPLKAVIYRCGDVHSVPLLGP*G 55
           MAVWDPTYPRKE  +SFF+ ++SENVI KAQWMPLKAVIYRCGD HSVPLLGP G
Sbjct: 77  MAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPCG 131

The following BLAST results are available for this feature:

BLAST of Chy6G122020 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G122020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BYI1	1.1e-18	81.82	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00630 PE...	[more]
A0A5D3DBS6	1.1e-18	81.82	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00960 PE...	[more]
A0A5A7T5S7	1.1e-18	81.82	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=...	[more]
A0A5A7T642	1.1e-18	81.82	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00350 PE=...	[more]
A0A5A7T1W2	1.1e-18	81.82	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Chy6G122020 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK20948.1	3.27e-25	81.82	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0046902.1	8.00e-24	81.82	girdin-like [Cucumis melo var. makuwa] >TYK03246.1 girdin-like [Cucumis melo var...	[more]
XP_031739496.1	8.11e-24	85.45	uncharacterized protein LOC116403043 [Cucumis sativus]	[more]
XP_031740432.1	1.20e-23	85.45	uncharacterized protein LOC116403430 [Cucumis sativus]	[more]
KAA0036955.1	1.23e-23	81.82	girdin-like [Cucumis melo var. makuwa]	[more]

BLAST of Chy6G122020 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G122020.1	Chy6G122020.1	mRNA