Chy6G121970 (gene) Cucumber (hystrix) v1

Overview
NameChy6G121970
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionGirdin-like
LocationchrH06: 19281157 .. 19281736 (-)
RNA-Seq ExpressionChy6G121970
SyntenyChy6G121970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATGTATGGAAATCTATGAGGAAGATAAAAGACAAAGGACACTATGAAGGAGTTACCAGTGGATACGAGGCATGGCAGGCAAACAGAATGAAGAATGTAATAGATACCTTAAGGGAGGTAGTTGAAAGAGTAGAAGAGACAAGCTTTGAACAACCAAACCAGTGGGTTGAGAAGAGCATAAAATTAAAAGAGAAAATCGACTATTAGAGCAAGACAATGAGAAAATTTGTAAAGAGAAAAGTCAATGGATGGATCATGCGAATTTTTTGCAGAAAGAGCTTGAAAAGACCAAGAGTTTCTTAAGAAATCCAGATAAGTTAGAAAAGAATCTTGAGGTGTTAGATAAAGAGATGAGGTGAATGAATAAAGCAAATAGAACGTTGAAAAATGAAAAGACAACATTACAGGCAACAATAGTATCAAAAGATGAATATATTAAAGATTTAGAAAGTGGGAAGGAATATTTTCTTGAGCTTGTCAATGATTTGAATACATCAATTGGAAAACGGGAAGCACAAATAGTAGATTTGGAAGCACACAATCATTCTCTACGTCAAACTGTTGATAGCTTACATGTGA

mRNA sequence

ATATGTATGGAAATCTATGAGGAAGATAAAAGACAAAGGACACTATGAAGGAGTTACCAGTGGATACGAGGCATGGCAGGCAAACAGAATGAAGAATGTAATAGATACCTTAAGGGAGGTAGTTGAAAGAGTAGAAGAGACAAGCTTTGAACAACCAAACCAGTGGGTTGAGAAGAGCATAAAATTAAAAGAGAAAATCGACTATTAGAGCAAGACAATGAGAAAATTTGTAAAGAGAAAAGTCAATGGATGGATCATGCGAATTTTTTGCAGAAAGAGCTTGAAAAGACCAAGAGTTTCTTAAGAAATCCAGATAAGTTAGAAAAGAATCTTGAGGTGTTAGATAAAGAGATGAGGTGAATGAATAAAGCAAATAGAACGTTGAAAAATGAAAAGACAACATTACAGGCAACAATAGTATCAAAAGATGAATATATTAAAGATTTAGAAAGTGGGAAGGAATATTTTCTTGAGCTTGTCAATGATTTGAATACATCAATTGGAAAACGGGAAGCACAAATAGTAGATTTGGAAGCACACAATCATTCTCTACGTCAAACTGTTGATAGCTTACATGTGA

Coding sequence (CDS)

ATATGTATGGAAATCTATGAGGAAGATAAAAGACAAAGGACACTATGAAGGAGTTACCAGTGGATACGAGGCATGGCAGGCAAACAGAATGAAGAATGTAATAGATACCTTAAGGGAGGTAGTTGAAAGAGTAGAAGAGACAAGCTTTGAACAACCAAACCAGTGGGTTGAGAAGAGCATAAAATTAAAAGAGAAAATCGACTATTAGAGCAAGACAATGAGAAAATTTGTAAAGAGAAAAGTCAATGGATGGATCATGCGAATTTTTTGCAGAAAGAGCTTGAAAAGACCAAGAGTTTCTTAAGAAATCCAGATAAGTTAGAAAAGAATCTTGAGGTGTTAGATAAAGAGATGAGGTGAATGAATAAAGCAAATAGAACGTTGAAAAATGAAAAGACAACATTACAGGCAACAATAGTATCAAAAGATGAATATATTAAAGATTTAGAAAGTGGGAAGGAATATTTTCTTGAGCTTGTCAATGATTTGAATACATCAATTGGAAAACGGGAAGCACAAATAGTAGATTTGGAAGCACACAATCATTCTCTACGTCAAACTGTTGATAGCTTACATGTGA

Protein sequence

ICMEIYEEDKRQRTL*RSYQWIRGMAGKQNEECNRYLKGGS*KSRRDKL*TTKPVG*EEHKIKRENRLLEQDNEKICKEKSQWMDHANFLQKELEKTKSFLRNPDKLEKNLEVLDKEMR*MNKANRTLKNEKTTLQATIVSKDEYIKDLESGKEYFLELVNDLNTSIGKREAQIVDLEAHNHSLRQTVDSLHVX
Homology
BLAST of Chy6G121970 vs. ExPASy TrEMBL
Match: A0A5A7VFL0 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00850 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 6.1e-50
Identity = 106/133 (79.70%), Postives = 121/133 (90.98%), Query Frame = 0

Query: 61  KIKRENRLLEQDNEKICKEKSQWMDHANFLQKELEKTKSFLRNPDKLEKNLEVLDKEMR* 120
           +++ +NRLLEQ+NEK+ KE SQWMDHA +LQ ELEKTKSFL+N DKLEK+LE LDKEMR 
Sbjct: 341 ELEEKNRLLEQENEKLRKETSQWMDHATYLQNELEKTKSFLKNQDKLEKDLETLDKEMRR 400

Query: 121 MNKANRTLKNEKTTLQATIVSKDEYIKDLESGKEYFLELVNDLNTSIGKREAQIVDLEAH 180
           MNKANR+LKNEKTTLQAT+ S+DEYIKDLE+GKEYFLE VNDLNTSIGKRE QI+DLEA 
Sbjct: 401 MNKANRSLKNEKTTLQATMGSQDEYIKDLENGKEYFLERVNDLNTSIGKRETQIMDLEAQ 460

Query: 181 NHSLRQTVDSLHV 194
           NHSLRQTVDSLH+
Sbjct: 461 NHSLRQTVDSLHL 473

BLAST of Chy6G121970 vs. ExPASy TrEMBL
Match: A0A5D3DJ95 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 2.3e-49
Identity = 104/133 (78.20%), Postives = 120/133 (90.23%), Query Frame = 0

Query: 61  KIKRENRLLEQDNEKICKEKSQWMDHANFLQKELEKTKSFLRNPDKLEKNLEVLDKEMR* 120
           +++ +NRLLEQ+NEK+ KE SQW+DHA +LQ ELEKTKSFL+N DKLEK++E LDKEMR 
Sbjct: 72  ELEEKNRLLEQENEKLRKETSQWIDHATYLQNELEKTKSFLKNQDKLEKDIETLDKEMRR 131

Query: 121 MNKANRTLKNEKTTLQATIVSKDEYIKDLESGKEYFLELVNDLNTSIGKREAQIVDLEAH 180
           MNKANR LKNEKTTLQAT+ S+DEYIKDLE+GKEYFLELVNDLNTSIGKRE QI+DLEA 
Sbjct: 132 MNKANRRLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVNDLNTSIGKRETQIMDLEAQ 191

Query: 181 NHSLRQTVDSLHV 194
           NHSL QTVDSLH+
Sbjct: 192 NHSLHQTVDSLHL 204

BLAST of Chy6G121970 vs. ExPASy TrEMBL
Match: A0A5D3D533 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 3.3e-48
Identity = 106/133 (79.70%), Postives = 119/133 (89.47%), Query Frame = 0

Query: 61  KIKRENRLLEQDNEKICKEKSQWMDHANFLQKELEKTKSFLRNPDKLEKNLEVLDKEMR* 120
           K+K +NRLLEQ+NEK+ KE SQWMDH   LQ ELEKTKSFL+N DKLEK+LE  DKEMR 
Sbjct: 123 KLKEKNRLLEQENEKLRKETSQWMDH---LQNELEKTKSFLKNQDKLEKDLETSDKEMRR 182

Query: 121 MNKANRTLKNEKTTLQATIVSKDEYIKDLESGKEYFLELVNDLNTSIGKREAQIVDLEAH 180
           MNKANR+LKNEKTTLQAT+ S+DEYIKDLE+GKEYFLELVNDLNTSIGKRE QI+DLEA 
Sbjct: 183 MNKANRSLKNEKTTLQATVGSEDEYIKDLENGKEYFLELVNDLNTSIGKRETQIMDLEAQ 242

Query: 181 NHSLRQTVDSLHV 194
           NHSLRQTVD+LH+
Sbjct: 243 NHSLRQTVDNLHL 252

BLAST of Chy6G121970 vs. ExPASy TrEMBL
Match: A0A5A7T6E2 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00290 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 7.4e-48
Identity = 102/133 (76.69%), Postives = 120/133 (90.23%), Query Frame = 0

Query: 61  KIKRENRLLEQDNEKICKEKSQWMDHANFLQKELEKTKSFLRNPDKLEKNLEVLDKEMR* 120
           +++ +NRLLEQ+NEK+ KE SQWMDHA +LQ +LEKTKSFL+N DKLEK+LE LDKEMR 
Sbjct: 364 ELEEKNRLLEQENEKLRKETSQWMDHATYLQNKLEKTKSFLKNQDKLEKDLETLDKEMRR 423

Query: 121 MNKANRTLKNEKTTLQATIVSKDEYIKDLESGKEYFLELVNDLNTSIGKREAQIVDLEAH 180
           MNKANR+LKNEKTT QAT+ S+DEYIKDLE+GKEYFL+LVNDLNTSI KRE +I+DLEA 
Sbjct: 424 MNKANRSLKNEKTTFQATMGSQDEYIKDLENGKEYFLKLVNDLNTSIRKRETKIMDLEAQ 483

Query: 181 NHSLRQTVDSLHV 194
           NHSLRQTVDSLH+
Sbjct: 484 NHSLRQTVDSLHL 496

BLAST of Chy6G121970 vs. ExPASy TrEMBL
Match: A0A5D3DK34 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00110 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 7.4e-48
Identity = 103/133 (77.44%), Postives = 118/133 (88.72%), Query Frame = 0

Query: 61  KIKRENRLLEQDNEKICKEKSQWMDHANFLQKELEKTKSFLRNPDKLEKNLEVLDKEMR* 120
           +++ +NRLLEQ+NEK+ KE SQWMDHA +LQ ELEK KS L+N DKLEKNLE LDKEMR 
Sbjct: 203 ELEEKNRLLEQENEKLRKETSQWMDHAAYLQNELEKNKSSLKNQDKLEKNLETLDKEMRR 262

Query: 121 MNKANRTLKNEKTTLQATIVSKDEYIKDLESGKEYFLELVNDLNTSIGKREAQIVDLEAH 180
           MNKANR+LKNEKTTL+AT+ S+DEYIKDLESGKEYFLE VNDL+TSIG RE QI+DLEAH
Sbjct: 263 MNKANRSLKNEKTTLKATVGSEDEYIKDLESGKEYFLEFVNDLHTSIGIRETQIMDLEAH 322

Query: 181 NHSLRQTVDSLHV 194
           NHSLRQ VDSLH+
Sbjct: 323 NHSLRQIVDSLHL 335

BLAST of Chy6G121970 vs. NCBI nr
Match: TYK23632.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (519), Expect = 1.41e-61
Identity = 104/132 (78.79%), Postives = 119/132 (90.15%), Query Frame = 0

Query: 62  IKRENRLLEQDNEKICKEKSQWMDHANFLQKELEKTKSFLRNPDKLEKNLEVLDKEMR*M 121
           ++ +NRLLEQ+NEK+ KE SQW+DHA +LQ ELEKTKSFL+N DKLEK++E LDKEMR M
Sbjct: 73  LEEKNRLLEQENEKLRKETSQWIDHATYLQNELEKTKSFLKNQDKLEKDIETLDKEMRRM 132

Query: 122 NKANRTLKNEKTTLQATIVSKDEYIKDLESGKEYFLELVNDLNTSIGKREAQIVDLEAHN 181
           NKANR LKNEKTTLQAT+ S+DEYIKDLE+GKEYFLELVNDLNTSIGKRE QI+DLEA N
Sbjct: 133 NKANRRLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVNDLNTSIGKRETQIMDLEAQN 192

Query: 182 HSLRQTVDSLHV 193
           HSL QTVDSLH+
Sbjct: 193 HSLHQTVDSLHL 204

BLAST of Chy6G121970 vs. NCBI nr
Match: KAA0066094.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 206 bits (524), Expect = 2.27e-60
Identity = 106/132 (80.30%), Postives = 120/132 (90.91%), Query Frame = 0

Query: 62  IKRENRLLEQDNEKICKEKSQWMDHANFLQKELEKTKSFLRNPDKLEKNLEVLDKEMR*M 121
           ++ +NRLLEQ+NEK+ KE SQWMDHA +LQ ELEKTKSFL+N DKLEK+LE LDKEMR M
Sbjct: 342 LEEKNRLLEQENEKLRKETSQWMDHATYLQNELEKTKSFLKNQDKLEKDLETLDKEMRRM 401

Query: 122 NKANRTLKNEKTTLQATIVSKDEYIKDLESGKEYFLELVNDLNTSIGKREAQIVDLEAHN 181
           NKANR+LKNEKTTLQAT+ S+DEYIKDLE+GKEYFLE VNDLNTSIGKRE QI+DLEA N
Sbjct: 402 NKANRSLKNEKTTLQATMGSQDEYIKDLENGKEYFLERVNDLNTSIGKRETQIMDLEAQN 461

Query: 182 HSLRQTVDSLHV 193
           HSLRQTVDSLH+
Sbjct: 462 HSLRQTVDSLHL 473

BLAST of Chy6G121970 vs. NCBI nr
Match: TYK18656.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 200 bits (509), Expect = 1.66e-59
Identity = 106/133 (79.70%), Postives = 119/133 (89.47%), Query Frame = 0

Query: 61  KIKRENRLLEQDNEKICKEKSQWMDHANFLQKELEKTKSFLRNPDKLEKNLEVLDKEMR* 120
           K+K +NRLLEQ+NEK+ KE SQWMDH   LQ ELEKTKSFL+N DKLEK+LE  DKEMR 
Sbjct: 123 KLKEKNRLLEQENEKLRKETSQWMDH---LQNELEKTKSFLKNQDKLEKDLETSDKEMRR 182

Query: 121 MNKANRTLKNEKTTLQATIVSKDEYIKDLESGKEYFLELVNDLNTSIGKREAQIVDLEAH 180
           MNKANR+LKNEKTTLQAT+ S+DEYIKDLE+GKEYFLELVNDLNTSIGKRE QI+DLEA 
Sbjct: 183 MNKANRSLKNEKTTLQATVGSEDEYIKDLENGKEYFLELVNDLNTSIGKRETQIMDLEAQ 242

Query: 181 NHSLRQTVDSLHV 193
           NHSLRQTVD+LH+
Sbjct: 243 NHSLRQTVDNLHL 252

BLAST of Chy6G121970 vs. NCBI nr
Match: XP_016900531.1 (PREDICTED: girdin-like [Cucumis melo])

HSP 1 Score: 199 bits (506), Expect = 5.92e-59
Identity = 103/132 (78.03%), Postives = 117/132 (88.64%), Query Frame = 0

Query: 62  IKRENRLLEQDNEKICKEKSQWMDHANFLQKELEKTKSFLRNPDKLEKNLEVLDKEMR*M 121
           ++ +NRLLEQ+NEK+ KE SQWMDHA +LQ ELEK KS L+N DKLEKNLE LDKEMR M
Sbjct: 130 LEEKNRLLEQENEKLRKETSQWMDHAAYLQNELEKNKSSLKNQDKLEKNLETLDKEMRRM 189

Query: 122 NKANRTLKNEKTTLQATIVSKDEYIKDLESGKEYFLELVNDLNTSIGKREAQIVDLEAHN 181
           NKANR+LKNEKTTL+AT+ S+DEYIKDLESGKEYFLE VNDL+TSIG RE QI+DLEAHN
Sbjct: 190 NKANRSLKNEKTTLKATVGSEDEYIKDLESGKEYFLEFVNDLHTSIGIRETQIMDLEAHN 249

Query: 182 HSLRQTVDSLHV 193
           HSLRQ VDSLH+
Sbjct: 250 HSLRQIVDSLHL 261

BLAST of Chy6G121970 vs. NCBI nr
Match: TYK27808.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 198 bits (504), Expect = 2.11e-58
Identity = 102/132 (77.27%), Postives = 117/132 (88.64%), Query Frame = 0

Query: 62  IKRENRLLEQDNEKICKEKSQWMDHANFLQKELEKTKSFLRNPDKLEKNLEVLDKEMR*M 121
           ++ +NRLLEQ+NEK+ K+ SQWMDHA +LQKELEKTKSFL+N DKLE NLE LDKEMR +
Sbjct: 208 LEEKNRLLEQENEKLRKKTSQWMDHATYLQKELEKTKSFLKNQDKLEMNLETLDKEMRRI 267

Query: 122 NKANRTLKNEKTTLQATIVSKDEYIKDLESGKEYFLELVNDLNTSIGKREAQIVDLEAHN 181
           NKANR+LKNEKTTLQA + S+DEYIKDLESGKEYFLELVNDLNTSI K+E QI+DLEAHN
Sbjct: 268 NKANRSLKNEKTTLQAIVGSQDEYIKDLESGKEYFLELVNDLNTSIEKQETQIMDLEAHN 327

Query: 182 HSLRQTVDSLHV 193
           H L Q VDSLH+
Sbjct: 328 HYLHQIVDSLHL 339

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VFL06.1e-5079.70Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00850 PE=... [more]
A0A5D3DJ952.3e-4978.20Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 P... [more]
A0A5D3D5333.3e-4879.70Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE... [more]
A0A5A7T6E27.4e-4876.69Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00290 PE=... [more]
A0A5D3DK347.4e-4877.44Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00110 PE... [more]
Match NameE-valueIdentityDescription
TYK23632.11.41e-6178.79girdin-like [Cucumis melo var. makuwa][more]
KAA0066094.12.27e-6080.30girdin-like [Cucumis melo var. makuwa][more]
TYK18656.11.66e-5979.70girdin-like [Cucumis melo var. makuwa][more]
XP_016900531.15.92e-5978.03PREDICTED: girdin-like [Cucumis melo][more]
TYK27808.12.11e-5877.27girdin-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy6G121970.1Chy6G121970.1mRNA