Chy6G121710 (gene) Cucumber (hystrix) v1

Overview
NameChy6G121710
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH06: 19088841 .. 19090406 (+)
RNA-Seq ExpressionChy6G121710
SyntenyChy6G121710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCGACTTTTTCTTCTCCAAATTTCCTTTCCTTCTCTTCCTTTTCCACAAAATTTCCCCTTCATTCCCTTCCCCACAATTTTTCCATTCCTTTCCAAGTCAGTGGCTTTCGCCACCGTCGCTGCACCTCTGTCGCATTGCCCGCCGCCGACGCTGACTCCAGCCGCAAGCTCCGCCCAGATCTGACTCCGCTGCCGCTGCCGCCGCACACTACTGCGCTGCAGGTTCCAACGCCAGCCAAATCTTCAACCGTACGTTCTACTCTCGGTGAGTTCATCTATTTTTATTTATATTAGTAATTTGGGTTGTGTTTAGAGTGATAGAAACATATATTTTCTACACCCCTCATAAAAAATATATTAAGATTTTTGAATTGTAAGCTTCTTTAGGTTAGAATTCAAGGTTTTTTTTTTTAAGAAAAAACATTCCAATTAGACATGGTTTATAAGCTTTTTAGTTAGGTTGTGTTGAGTGTTAAAATCTCACTTTAGATACTTTCTAGGTTGTCTTGGGTGTCATCAAAGTGTTTTAGGTGCACTTTAGTTTGGGATTGAAAGTGAAAGTAGCATTTAGGTACTTTTTAGGTTGTGTTTAGAGCGAAAGTGCCATTTAGACACTTTTCTTTAACTTAGTTGGTTTTGAGATTCAAGGTGTCTTTTAGGAAATTATTAGGTATGCGGAAAAATGTTTATCTAACCGTTTTGGGTTTTCAAGATCAATTGACTAACCTTATACAACTAGGTACGTTATGACAACTTTGAGTTATGGTTAGTGGATTTAGGAACTTGATTTGGTTATTGTATGGTTATCCTAGCCAAGTATGAGCATTTAGTGGATTTATGAACTTAATTTGTTGTTGTGTGGCTATCCTGCCATTATGGTAGCCACTTTAAATATGTATATTTAGAGGGGAGGGGTTTACTTTGTCACTTTATATTCATTTTTGTTGCTACTTTGTAGGTTTAAAGGGCGGTTAAATGGAACTTAGGATACGTTCGTAGCTTTTGAGGTGGATGTGTACTAATTGTTTTTTTACATTAGATTGAGGCTAAATTTGTGCACTTGAAAGGAACTTTGTTCTTGTGTATTTGTAAGGATTTGATTGTTGTGTTCTATGCTTTTATGACCATCGAATGTCTGGTTTAGTCTTGAAAAAAATTTAGTTGGATAGAAGAGGGAGGGGTTCGCTTTGGCACTTTATATGTATCTGTCGCTACTTTTTCTAGATTTAAAGGGCAGTTTGATGGAACTTAGAAAATGTTCATAGCTTTGGGAGGGGTGTTTATGTGTTCTAATTGTTTTTTCTTCTCTAATTTTTCCCTCAAAATGTGAGATTTTATTTCTTGATTTCAATCTCTATTTGTTGATCAATTTAATTCATATATGTTTTTGTAGTATAGCCTTTTAATCGGTTTGTCAAGATATTAGTTTGAATTGGAACCTTTAAATCCGCATCCATTCTCTTTTCTCTGACACGAAATTAATGCAATGGTTGTGGTTTCTGAAGATGATTTTGGGTCTTTGTAAACTATTCTTGTTGCAGGTCGCTGGGAATTTCATAGCTGA

mRNA sequence

ATCCGACTTTTTCTTCTCCAAATTTCCTTTCCTTCTCTTCCTTTTCCACAAAATTTCCCCTTCATTCCCTTCCCCACAATTTTTCCATTCCTTTCCAAGTCAGTGGCTTTCGCCACCGTCGCTGCACCTCTGTCGCATTGCCCGCCGCCGACGCTGACTCCAGCCGCAAGCTCCGCCCAGATCTGACTCCGCTGCCGCTGCCGCCGCACACTACTGCGCTGCAGGTTCCAACGCCAGCCAAATCTTCAACCGTACGTTCTACTCTCGGTCGCTGGGAATTTCATAGCTGA

Coding sequence (CDS)

ATCCGACTTTTTCTTCTCCAAATTTCCTTTCCTTCTCTTCCTTTTCCACAAAATTTCCCCTTCATTCCCTTCCCCACAATTTTTCCATTCCTTTCCAAGTCAGTGGCTTTCGCCACCGTCGCTGCACCTCTGTCGCATTGCCCGCCGCCGACGCTGACTCCAGCCGCAAGCTCCGCCCAGATCTGACTCCGCTGCCGCTGCCGCCGCACACTACTGCGCTGCAGGTTCCAACGCCAGCCAAATCTTCAACCGTACGTTCTACTCTCGGTCGCTGGGAATTTCATAGCTGA

Protein sequence

IRLFLLQISFPSLPFPQNFPFIPFPTIFPFLSKSVAFATVAAPLSHCPPPTLTPAASSAQI*LRCRCRRTLLRCRFQRQPNLQPYVLLSVAGNFIAX
Homology
[Close]
BLAST of Chy6G121710 vs. NCBI nr
Match: KAA0037112.1 (uncharacterized protein E6C27_scaffold379G00130 [Cucumis melo var. makuwa] >TYK13964.1 uncharacterized protein E5676_scaffold832G001680 [Cucumis melo var. makuwa])

HSP 1 Score: 47.8 bits (112), Expect = 9.71e-05
Identity = 26/44 (59.09%), Postives = 29/44 (65.91%), Query Frame = 0 

Query: 19 FPFIPFPTIFPFLSKSVAFATVAAP--LSHCPPPTLTPAASSAQ 60
          FPF  FPTIFPFL K +  A VAAP  + H  PP LTP ASS +
Sbjct: 3  FPFFSFPTIFPFLPKVITLAPVAAPQPMPHRMPPMLTPVASSTK 46

[Close]
BLAST of Chy6G121710 vs. NCBI nr
Match: KAA0033001.1 (uncharacterized protein E6C27_scaffold269G00940 [Cucumis melo var. makuwa] >TYK03410.1 uncharacterized protein E5676_scaffold121G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 47.4 bits (111), Expect = 2.24e-04
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 0 

Query: 19 FPFIPFPTIFPFLSKSVAFATVAAP--LSHCPPPTLTPAASSAQ 60
          FPF PFPTIFPFL K +  A + AP  + H  PP LTP ASS +
Sbjct: 3  FPFFPFPTIFPFLPKLITPAPITAPQLMPHRMPPMLTPVASSTK 46

The following BLAST results are available for this feature:
BLAST of Chy6G121710 vs.
Match NameE-valueIdentityDescription
BLAST of Chy6G121710 vs.
Match NameE-valueIdentityDescription
BLAST of Chy6G121710 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0037112.19.71e-0559.09uncharacterized protein E6C27_scaffold379G00130 [Cucumis melo var. makuwa] >TYK1... [more]
KAA0033001.12.24e-0456.82uncharacterized protein E6C27_scaffold269G00940 [Cucumis melo var. makuwa] >TYK0... [more]
BLAST of Chy6G121710 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy6G121710.1Chy6G121710.1mRNA