Chy6G121440 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G121440
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Retrotransposon protein
Location	chrH06: 18715394 .. 18716376 (+)
RNA-Seq Expression	Chy6G121440
Synteny	Chy6G121440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGTTCTTCAAGAGCACCGAAACACACATGGACTAAAGAGGAAGAAGCAAAACTGGTTGAGTGCTTGATGAAATTGATAGAGATCGGATAATGGACATTTTGACCTGGGTACTTGGCCCAATTACAATGGATGATGGCAGAGAAGTTGCCCGTCACTAATATCCAAGGATCACCGACTATAGATTGTCGTGTGAAATCTTTTAAAAAAAACCTACCAAAAAATTTTGTAAATGAGGGGGCCATCGTGTAGTGGCTTTGGATGGAACGAAGAATATCAATGTATCATTGTAGAACGAGAGTTGTTTGATAGTTGGGTCAAGGTATTAATTTCACAGTACAATTTTATGTACTTTTATAATCCCAATCATCAACTAATTTGTCTGAATTATGTCTGTACAGAGTCATCCTATAGCCAAAGGCCTTTTACACAAATCATTTCTATATTATGATGATTTGTCCTATGCCTTCAGTAAAGATCGGGCAACAAGAGCACGTTCAGAGACCTTTGATGATGTGGGATCTAATGTGCATTACAATTTTAATAACGGTTCCCCTTGGTGATTCACATGATCAAGATATCCCGATGATGTATAGCTCAGGACTGGATATGTCACTAGATGAGATGTTAGGAACACGTGCAAGTCGATCAGGTGAAGGAAGAAATTGTTCAAGTGGAAGTAAGAGAAAACGGGGTGGTCAACATTATGAAGCAGTAGATGTGATCAGTAATGCAATGGAAGTTAGAAATGATCAATTAAATTCAATTGCAAATTGGCCGAAAGAAAAGCGTGAAACAAAGGTCTAATTACATGTTGAAGTCGTGAAACAGCTGCAAGATATCCCTGAACTACAAAGTTGAGACAGGGTAAAGCTTATGCAAATCATATTCCATAGGGTGGATGACATAGAGAGATTCTTGTCGTGTTCAACAGAACTTAAATTGGAGTATTGCAGGGTTCTCTTGGAAGATAATGTTTG

mRNA sequence

ATGTCAAGTTCTTCAAGAGCACCGAAACACACATGGACTAAAGAGGAAGAAGCAAAACTGGTTGAGTGCTTGATGAAATTGATAGAGATCGGATAATGGACATTTTGACCTGGGTACTTGGCCCAATTACAATGGATGATGGCAGAGAAGTTGCCCGTCACTAATATCCAAGGATCACCGACTATAGATTGTCGTGTGAAATCTTTTAAAAAAAACCTACCAAAAAATTTTGTAAATGAGGGGGCCATCGTGTAGTGGCTTTGGATGGAACGAAGAATATCAATGTATCATTGTAGAACGAGAGTTGTTTGATAGTTGGGTCAAGAGTCATCCTATAGCCAAAGGCCTTTTACACAAATCATTTCTATATTATGATGATTTGTCCTATGCCTTCAGTAAAGATCGGGCAACAAGAGCACGTTCAGAGACCTTTGATGATGTGGGATCTAATGTGCATTACAATTTTAATAACGGTTCCCCTTGGTGATTCACATGATCAAGATATCCCGATGATGTATAGCTCAGGACTGGATATGTCACTAGATGAGATGTTAGGAACACGTGCAAGTCGATCAGGTGAAGGAAGAAATTGTTCAAGTGGAAGTAAGAGAAAACGGGGTGGTCAACATTATGAAGCAGTAGATGTGATCAGTAATGCAATGGAAGTTAGAAATGATCAATTAAATTCAATTGCAAATTGGCCGAAAGAAAAGCGTGAAACAAAGGTCTAATTACATGTTGAAGTCGTGAAACAGCTGCAAGATATCCCTGAACTACAAAGTTGAGACAGGGTAAAGCTTATGCAAATCATATTCCATAGGGTGGATGACATAGAGAGATTCTTGTCGTGTTCAACAGAACTTAAATTGGAGTATTGCAGGGTTCTCTTGGAAGATAATGTTTG

Coding sequence (CDS)

ATGTCAAGTTCTTCAAGAGCACCGAAACACACATGGACTAAAGAGGAAGAAGCAAAACTGGTTGAGTGCTTGATGAAATTGATAGAGATCGGATAATGGACATTTTGACCTGGGTACTTGGCCCAATTACAATGGATGATGGCAGAGAAGTTGCCCGTCACTAATATCCAAGGATCACCGACTATAGATTGTCGTGTGAAATCTTTTAAAAAAAACCTACCAAAAAATTTTGTAAATGAGGGGGCCATCGTGTAGTGGCTTTGGATGGAACGAAGAATATCAATGTATCATTGTAGAACGAGAGTTGTTTGATAGTTGGGTCAAGAGTCATCCTATAGCCAAAGGCCTTTTACACAAATCATTTCTATATTATGATGATTTGTCCTATGCCTTCAGTAAAGATCGGGCAACAAGAGCACGTTCAGAGACCTTTGATGATGTGGGATCTAATGTGCATTACAATTTTAATAACGGTTCCCCTTGGTGATTCACATGATCAAGATATCCCGATGATGTATAGCTCAGGACTGGATATGTCACTAGATGAGATGTTAGGAACACGTGCAAGTCGATCAGGTGAAGGAAGAAATTGTTCAAGTGGAAGTAAGAGAAAACGGGGTGGTCAACATTATGAAGCAGTAGATGTGATCAGTAATGCAATGGAAGTTAGAAATGATCAATTAAATTCAATTGCAAATTGGCCGAAAGAAAAGCGTGAAACAAAGGTCTAATTACATGTTGAAGTCGTGAAACAGCTGCAAGATATCCCTGAACTACAAAGTTGAGACAGGGTAAAGCTTATGCAAATCATATTCCATAGGGTGGATGACATAGAGAGATTCTTGTCGTGTTCAACAGAACTTAAATTGGAGTATTGCAGGGTTCTCTTGGAAGATAATGTTTG

Protein sequence

MSSSSRAPKHTWTKEEEAKLVECLMKLIEIG*WTF*PGYLAQLQWMMAEKLPVTNIQGSPTIDCRVKSFKKNLPKNFVNEGAIV*WLWMERRISMYHCRTRVV**LGQESSYSQRPFTQIISIL**FVLCLQ*RSGNKSTFRDL**CGI*CALQF**RFPLVIHMIKISR*CIAQDWICH*MRC*EHVQVDQVKEEIVQVEVRENGVVNIMKQ*M*SVMQWKLEMIN*IQLQIGRKKSVKQRSNYMLKS*NSCKISLNYKVETG*SLCKSYSIGWMT*RDSCRVQQNLNWSIAGFSWKIMFX

Homology

[Close]

BLAST of Chy6G121440 vs. ExPASy TrEMBL
Match: A0A5D3CQS4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00390 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 9.9e-23
Identity = 59/76 (77.63%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1  MSSSSRAPKHTWTKEEEAKLVECLMKLIEIG*W-----TF*PGYLAQLQWMMAEKLPVTN 60
          M+SSSRAPKHTWTKEEEAKLVECL++L+  G W     TF PGYLAQLQ MMAEKLP TN
Sbjct: 1  MASSSRAPKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRPGYLAQLQRMMAEKLPDTN 60

Query: 61 IQGSPTIDCRVKSFKK 72
          IQGSPTID RVKS KK
Sbjct: 61 IQGSPTIDYRVKSLKK 76

[Close]

BLAST of Chy6G121440 vs. ExPASy TrEMBL
Match: A0A5A7TJS2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00710 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.2e-21
Identity = 57/86 (66.28%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 1   MSSSSRAPKHTWTKEEEAKLVECLMKLIEIG*W-----TF*PGYLAQLQWMMAEKLPVTN 60
           M+SSSRA KHTWTKEEEAKLVECL++L+  G W     TF  GYLAQLQ MM +KL  TN
Sbjct: 172 MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTN 231

Query: 61  IQGSPTIDCRVKSFKKNLPKNFVNEG 82
           IQGS  +DCRVKS KK+LP NF   G
Sbjct: 232 IQGSLPMDCRVKSLKKHLPSNFRMRG 257

[Close]

BLAST of Chy6G121440 vs. ExPASy TrEMBL
Match: A0A5D3D8J6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00030 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.1e-21
Identity = 56/82 (68.29%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 1   MSSSSRAPKHTWTKEEEAKLVECLMKLIEIG*W-----TF*PGYLAQLQWMMAEKLPVTN 60
           M+SSSRA KHTWTKEEEAKLVECL++L+  G W     TF  GYLAQLQ MM +KL  TN
Sbjct: 172 MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRLGYLAQLQRMMVKKLSDTN 231

Query: 61  IQGSPTIDCRVKSFKKNLPKNF 78
           IQGS  +DCRVKS KK+LP NF
Sbjct: 232 IQGSLPMDCRVKSLKKHLPSNF 253

[Close]

BLAST of Chy6G121440 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-19
Identity = 54/76 (71.05%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 1  MSSSSRAPKHTWTKEEEAKLVECLMKLIEIG*W-----TF*PGYLAQLQWMMAEKLPVTN 60
          M+S SRAPKHTWTKEEE K VECL++L+  G W     TF PGYLAQLQ MMAEKLP TN
Sbjct: 1  MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61 IQGSPTIDCRVKSFKK 72
          IQ S TIDC VKS KK
Sbjct: 61 IQESSTIDCHVKSLKK 76

[Close]

BLAST of Chy6G121440 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-19
Identity = 54/76 (71.05%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 1  MSSSSRAPKHTWTKEEEAKLVECLMKLIEIG*W-----TF*PGYLAQLQWMMAEKLPVTN 60
          M+S SRAPKHTWTKEEE K VECL++L+  G W     TF PGYLAQLQ MMAEKLP TN
Sbjct: 1  MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61 IQGSPTIDCRVKSFKK 72
          IQ S TIDC VKS KK
Sbjct: 61 IQESSTIDCHVKSLKK 76

[Close]

BLAST of Chy6G121440 vs. NCBI nr
Match: KAA0066605.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14213.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (287), Expect = 4.11e-28
Identity = 59/76 (77.63%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1  MSSSSRAPKHTWTKEEEAKLVECLMKLIEIG*W-----TF*PGYLAQLQWMMAEKLPVTN 60
          M+SSSRAPKHTWTKEEEAKLVECL++L+  G W     TF PGYLAQLQ MMAEKLP TN
Sbjct: 1  MASSSRAPKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRPGYLAQLQRMMAEKLPDTN 60

Query: 61 IQGSPTIDCRVKSFKK 71
          IQGSPTID RVKS KK
Sbjct: 61 IQGSPTIDYRVKSLKK 76

[Close]

BLAST of Chy6G121440 vs. NCBI nr
Match: KAA0043564.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (273), Expect = 1.65e-23
Identity = 57/86 (66.28%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 1   MSSSSRAPKHTWTKEEEAKLVECLMKLIEIG*W-----TF*PGYLAQLQWMMAEKLPVTN 60
           M+SSSRA KHTWTKEEEAKLVECL++L+  G W     TF  GYLAQLQ MM +KL  TN
Sbjct: 172 MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTN 231

Query: 61  IQGSPTIDCRVKSFKKNLPKNFVNEG 81
           IQGS  +DCRVKS KK+LP NF   G
Sbjct: 232 IQGSLPMDCRVKSLKKHLPSNFRMRG 257

[Close]

BLAST of Chy6G121440 vs. NCBI nr
Match: TYK19779.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (271), Expect = 1.72e-22
Identity = 57/86 (66.28%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 1   MSSSSRAPKHTWTKEEEAKLVECLMKLIEIG*W-----TF*PGYLAQLQWMMAEKLPVTN 60
           M+SSSRA KHTWTKEEEAKLVECL++L+  G W     TF  GYLAQLQ MM +KL  TN
Sbjct: 172 MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRLGYLAQLQRMMVKKLSDTN 231

Query: 61  IQGSPTIDCRVKSFKKNLPKNFVNEG 81
           IQGS  +DCRVKS KK+LP NF   G
Sbjct: 232 IQGSLPMDCRVKSLKKHLPSNFRIRG 257

[Close]

BLAST of Chy6G121440 vs. NCBI nr
Match: KAA0067707.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK21933.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (254), Expect = 2.56e-22
Identity = 53/87 (60.92%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 1  MSSSSRAPKHTWTKEEEAKLVECLMKLIEIG*W-----TF*PGYLAQLQWMMAEKLPVTN 60
          M SSSRA KHTWTKEEEA+L ECL++L+  G W     TF PGYLAQLQ MMA+KLP T 
Sbjct: 1  MESSSRASKHTWTKEEEAELAECLVELVSTGGWRSNNGTFRPGYLAQLQRMMAKKLPDTY 60

Query: 61 IQGSPTIDCRVKSFKKNLPKNFVNEGA 82
          IQGSP ID     F+ N+P N  N+G 
Sbjct: 61 IQGSPMID-----FRSNVPNNMFNDGV 82

[Close]

BLAST of Chy6G121440 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (261), Expect = 3.61e-22
Identity = 54/76 (71.05%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 1  MSSSSRAPKHTWTKEEEAKLVECLMKLIEIG*W-----TF*PGYLAQLQWMMAEKLPVTN 60
          M+S SRAPKHTWTKEEE K VECL++L+  G W     TF PGYLAQLQ MMAEKLP TN
Sbjct: 1  MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61 IQGSPTIDCRVKSFKK 71
          IQ S TIDC VKS KK
Sbjct: 61 IQESSTIDCHVKSLKK 76

The following BLAST results are available for this feature:

BLAST of Chy6G121440 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G121440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CQS4	9.9e-23	77.63	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TJS2	3.2e-21	66.28	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D8J6	7.1e-21	68.29	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U0H7	1.0e-19	71.05	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	1.0e-19	71.05	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]

BLAST of Chy6G121440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066605.1	4.11e-28	77.63	retrotransposon protein [Cucumis melo var. makuwa] >TYK14213.1 retrotransposon p...	[more]
KAA0043564.1	1.65e-23	66.28	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK19779.1	1.72e-22	66.28	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0067707.1	2.56e-22	60.92	retrotransposon protein [Cucumis melo var. makuwa] >TYK21933.1 retrotransposon p...	[more]
XP_008441954.1	3.61e-22	71.05	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]

BLAST of Chy6G121440 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 2..70
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 2..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G121440.1	Chy6G121440.1	mRNA