Chy6G121100 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G121100
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	cytochrome c oxidase subunit 6a, mitochondrial
Location	chrH06: 17935960 .. 17937465 (+)
RNA-Seq Expression	Chy6G121100
Synteny	Chy6G121100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGGCGTCGATCCGATCCAATCTTCTTCGCGCCGCCCTACGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGACGCTCGTAAGTCTCTCTCTCTCTCTTAGGTATTTTTTTTAATTGCGATGGTATGTGCACTGCAACTGGTTCACGTCTCTCTCTATTTGCTTGTCTTTATTGACGGATTTTTTTTCTTGTTAATTTCAGCAACTTTGCTTAGTCCATTATATGTTTTAATTTTATTCATTTTCCTGCCCTGTTTTCATCTGACGAAATGGGGGAAAGAAGGAGGATGTTGATTATTGAATCATGTTCAAAATTTTGTTCCAAAATAATTTGATTCGATGTTTTTCGCTCCTTTTAGATTGAAAGTCTTGCCTTGCAAAAGGAGGTGTTTTGAAATTTGAACACAGATTTAAATGTTATTCAATAGTTTTTTAAAATAATCGAATGGGATTATATACATTATATTTGACAATTAACTGTGCATGGGGTTTCCAGCCGCTAAGAAGTAGATTTGGTTTAAAGCTTAGGAAAGAAGATGGCAAAGGGGAATGATCTATTACTGAGTGGCAACACTATAATTGAAAAAAAATGCTCTAGAAAGTCTTGTATTTTGTGGTAGATTTAATTTACCTCTGATTTCGAGTGAGTAAGGCACGGTGGAAGGGAAACACAAATGCATCTAATTTATTAGAGGGTTAAGACCTTTAGTCAATGAACTCTTCTCCAGGTTGAAGTTAGTGAACGTTTTTTCACCTCTAATCTGATGCTTTCTTTTTTGATTAATTCTTTTCTGGGATGGAGGTCATGGAAGTTTTTCCACCTCTAATCATATATCTGTTTCTTCTTTCTCTCACTCCTCCCCACATTTTTTCTCTCACACGTTTATCGGTTGTGGGTGGGGAGGGGGGGGGGGGGGGGGGATTTCTTCTTTTTTTGGAGTAGGTAAGTACACTGCTGGTGCTAAGCTATTTCAGTGTTGTGAATGTATTTTCTAGTAATCCACCATAACATATACTTTTGATGCCTCGTTACATTTGTTGGGTGCATATGTTTTGTTAGTTTTAAATACTATTTCATTCTTATATTGTTCAAGCACGTAGGAAGAAAAAATTGAGTGCAAGAGTGCTATGACGCTTGTACTCCTTATGTTTGATCTCTCACCTTCCTTTTCTTATGTCAGGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGTAACCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGTAAGCTATAACTTCAGTCAATTTATACTTTTTCCTCCAGTGCTGAGTACCTTAGTTGGAACTATGTATTGTACTCTCATGTGTTAACCATTTATTTTTGTTTGGGTTTTCACTCTATGCAGGCATATCCATATATGCACATACGCAATAAAGAGTTTCCTTGGGGTAAGTTTCCACTTCATTAA

mRNA sequence

ATGGCAATGGCGTCGATCCGATCCAATCTTCTTCGCGCCGCCCTACGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGACGCTCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGTAACCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGCATATCCATATATGCACATACGCAATAAAGAGTTTCCTTGGGGTAAGTTTCCACTTCATTAA

Coding sequence (CDS)

ATGGCAATGGCGTCGATCCGATCCAATCTTCTTCGCGCCGCCCTACGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGACGCTCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGTAACCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGCATATCCATATATGCACATACGCAATAAAGAGTTTCCTTGGGGTAAGTTTCCACTTCATTAA

Protein sequence

MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGKFPLH*

Homology

[Close]

BLAST of Chy6G121100 vs. ExPASy Swiss-Prot
Match: Q9T070 (Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX6A PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.6e-27
Identity = 61/89 (68.54%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIVTCSILAF 60
          MA A +RS L RA  R A + SV PKR F+SSA HDDA E AKWEKITY GI +C+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYMHIRNKEFPWG 89
          Y LSKGH H E+PPAYP+MHIRNKEFPWG
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWG 89

[Close]

BLAST of Chy6G121100 vs. ExPASy TrEMBL
Match: A0A0A0L3I0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115610 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.3e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 3  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 62
          MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL
Sbjct: 1  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 60

Query: 63 SKGHPHHEEPPAYPYMHIRNKEFPWG 89
          SKGHPHHEEPPAYPYMHIRNKEFPWG
Sbjct: 61 SKGHPHHEEPPAYPYMHIRNKEFPWG 86

[Close]

BLAST of Chy6G121100 vs. ExPASy TrEMBL
Match: A0A1S3BPM0 (cytochrome c oxidase subunit 6a, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491837 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.3e-42
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMASIRSN LRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY
Sbjct: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWG 89
          NLSKGHPHHEEPPAYPY+HIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of Chy6G121100 vs. ExPASy TrEMBL
Match: A0A6J1ERW3 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111435960 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.1e-40
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMA+IRSNLLRAA RGASRNS QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWG 89
          NLSKGHPH+EEPPAYPY+HIRNKEFPWG
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of Chy6G121100 vs. ExPASy TrEMBL
Match: A0A6J1J8L1 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111482732 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.4e-39
Identity = 81/88 (92.05%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMA IRSNLLRAA RGASRN  QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFY
Sbjct: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWG 89
          NLSKGHPH+EEPPAYPY+HIRNKEFPWG
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of Chy6G121100 vs. ExPASy TrEMBL
Match: A0A6J1KMD3 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111495450 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.2e-39
Identity = 79/88 (89.77%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMA+IRSNLLRAA+RGASRNS QPKRGFASSAHDDA ETAKWEKITYAGI  C+ LAFY
Sbjct: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWG 89
          NLSKGHPHHEEPPAYPY+HIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of Chy6G121100 vs. NCBI nr
Match: XP_011650608.1 (cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sativus] >KAE8650204.1 hypothetical protein Csa_009645 [Cucumis sativus])

HSP 1 Score: 181 bits (460), Expect = 2.22e-57
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY
Sbjct: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWG 88
          NLSKGHPHHEEPPAYPYMHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWG 88

[Close]

BLAST of Chy6G121100 vs. NCBI nr
Match: KAG7015416.1 (Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179 bits (454), Expect = 1.61e-56
Identity = 85/93 (91.40%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMA+IRSNLLRAA RGASRNS QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWGKFPLH 93
          NLSKGHPH+EEPPAYPY+HIRNKEFPWGK P H
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGKLPRH 93

[Close]

BLAST of Chy6G121100 vs. NCBI nr
Match: XP_008450167.1 (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo])

HSP 1 Score: 179 bits (453), Expect = 2.59e-56
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMASIRSN LRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY
Sbjct: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWG 88
          NLSKGHPHHEEPPAYPY+HIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of Chy6G121100 vs. NCBI nr
Match: XP_038905594.1 (cytochrome c oxidase subunit 6a, mitochondrial [Benincasa hispida])

HSP 1 Score: 175 bits (443), Expect = 8.70e-55
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMASIRSNLLRAA+RGASRNS QPKRGFASSAHDDARETAKWEKITYAGI TC+ILAFY
Sbjct: 1  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWG 88
          NLSKGHPHHEEPPAYPY+HIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of Chy6G121100 vs. NCBI nr
Match: XP_023551866.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174 bits (440), Expect = 2.50e-54
Identity = 83/88 (94.32%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMA+IRSNLLRAALRGASRNS QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFY
Sbjct: 1  MAMATIRSNLLRAALRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWG 88
          NLSKGHPH+EEPPAYPY+HIRNKEFPWG
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of Chy6G121100 vs. TAIR 10
Match: AT4G37830.1 (cytochrome c oxidase-related )

HSP 1 Score: 122.5 bits (306), Expect = 1.8e-28
Identity = 61/89 (68.54%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIVTCSILAF 60
          MA A +RS L RA  R A + SV PKR F+SSA HDDA E AKWEKITY GI +C+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYMHIRNKEFPWG 89
          Y LSKGH H E+PPAYP+MHIRNKEFPWG
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWG 89

[Close]

BLAST of Chy6G121100 vs. TAIR 10
Match: AT4G37830.2 (cytochrome c oxidase-related )

HSP 1 Score: 94.0 bits (232), Expect = 7.0e-20
Identity = 52/89 (58.43%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIVTCSILAF 60
          MA A +RS L RA  R A + SV PKR F+SSA HDDA E AKWEKITY GI +C+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYMHIRNKEFPWG 89
          Y LSKGH H E+PP          EFPWG
Sbjct: 61 YVLSKGHHHGEDPP----------EFPWG 79

The following BLAST results are available for this feature:

BLAST of Chy6G121100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T070	2.6e-27	68.54	Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Chy6G121100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3I0	2.3e-42	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115610 PE=3 SV=1	[more]
A0A1S3BPM0	2.3e-42	97.73	cytochrome c oxidase subunit 6a, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1ERW3	2.1e-40	93.18	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1J8L1	1.4e-39	92.05	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1KMD3	5.2e-39	89.77	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of Chy6G121100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650608.1	2.22e-57	100.00	cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sativus] >KAE...	[more]
KAG7015416.1	1.61e-56	91.40	Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma ...	[more]
XP_008450167.1	2.59e-56	97.73	PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo]	[more]
XP_038905594.1	8.70e-55	94.32	cytochrome c oxidase subunit 6a, mitochondrial [Benincasa hispida]	[more]
XP_023551866.1	2.50e-54	94.32	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Chy6G121100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37830.1	1.8e-28	68.54	cytochrome c oxidase-related	[more]
AT4G37830.2	7.0e-20	58.43	cytochrome c oxidase-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001349	Cytochrome c oxidase, subunit VIa	PFAM	PF02046	COX6A	coord: 34..88 e-value: 3.8E-6 score: 27.3
IPR001349	Cytochrome c oxidase, subunit VIa	PANTHER	PTHR11504	CYTOCHROME C OXIDASE POLYPEPTIDE VIA	coord: 1..89
IPR036418	Cytochrome c oxidase, subunit VIa superfamily	GENE3D	4.10.95.10	Cytochrome c oxidase, subunit VIa	coord: 29..92 e-value: 3.7E-15 score: 57.6
IPR036418	Cytochrome c oxidase, subunit VIa superfamily	SUPERFAMILY	81411	Mitochondrial cytochrome c oxidase subunit VIa	coord: 30..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..37
None	No IPR available	PANTHER	PTHR11504:SF0	CYTOCHROME C OXIDASE SUBUNIT 6A, MITOCHONDRIAL	coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G121100.1	Chy6G121100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0005751	mitochondrial respiratory chain complex IV
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0004129	cytochrome-c oxidase activity
molecular_function	GO:0030234	enzyme regulator activity