Chy6G121050 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G121050
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	DUF4218 domain-containing protein
Location	chrH06: 17864956 .. 17865237 (+)
RNA-Seq Expression	Chy6G121050
Synteny	Chy6G121050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGAAATACAAGAGGATATGAGAAAATCATCAGAAGATAGATCTGAACTAACCCTAGAGGCAATTATTTATGAACGGATTTTGGAAAAACGTTCAGGTAATACTACATGTCTTAGATGGAAGCCAACCCCTAATGTAGCAACATGTGGTACATCGACCTATGTGTTTGAGAAAGATATTAGGGATAAGTATGAAAAGCTTCAAGTAGAGGTGAAAGACTTAAAGGAGAAAAATGTCATGTTGAAGCTAAGTCAACAATTTCGGGTTTTCAAGATCAATTGA

mRNA sequence

TTGGAAATACAAGAGGATATGAGAAAATCATCAGAAGATAGATCTGAACTAACCCTAGAGGCAATTATTTATGAACGGATTTTGGAAAAACGTTCAGGTAATACTACATGTCTTAGATGGAAGCCAACCCCTAATGTAGCAACATGTGGTACATCGACCTATGTGTTTGAGAAAGATATTAGGGATAAGTATGAAAAGCTTCAAGTAGAGGTGAAAGACTTAAAGGAGAAAAATGTCATGTTGAAGCTAAGTCAACAATTTCGGGTTTTCAAGATCAATTGA

Coding sequence (CDS)

TTGGAAATACAAGAGGATATGAGAAAATCATCAGAAGATAGATCTGAACTAACCCTAGAGGCAATTATTTATGAACGGATTTTGGAAAAACGTTCAGGTAATACTACATGTCTTAGATGGAAGCCAACCCCTAATGTAGCAACATGTGGTACATCGACCTATGTGTTTGAGAAAGATATTAGGGATAAGTATGAAAAGCTTCAAGTAGAGGTGAAAGACTTAAAGGAGAAAAATGTCATGTTGAAGCTAAGTCAACAATTTCGGGTTTTCAAGATCAATTGA

Protein sequence

LEIQEDMRKSSEDRSELTLEAIIYERILEKRSGNTTCLRWKPTPNVATCGTSTYVFEKDIRDKYEKLQVEVKDLKEKNVMLKLSQQFRVFKIN*

Homology

[Close]

BLAST of Chy6G121050 vs. ExPASy TrEMBL
Match: A0A5A7UKB8 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G001590 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.6e-17
Identity = 51/76 (67.11%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 3   IQEDMRKSSEDRSELTLEAIIYERILEKRSGNTTCLRWKPTPNVATCGTSTYVFEKDIRD 62
           +QE++RKSSED ++ T + IIYE++LEKRSG+T  L WK TPNVATC TST+VFEKDI D
Sbjct: 242 MQEEIRKSSEDGAQPTPKKIIYEQVLEKRSGHTKGLGWKATPNVATC-TSTHVFEKDIGD 301

Query: 63  KYEKLQVEVKDLKEKN 79
           KYEKLQ +V +LKE+N
Sbjct: 302 KYEKLQTKVINLKEEN 316

[Close]

BLAST of Chy6G121050 vs. NCBI nr
Match: KAA0055007.1 (uncharacterized protein E6C27_scaffold43052G001590 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 3.35e-21
Identity = 51/76 (67.11%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 3   IQEDMRKSSEDRSELTLEAIIYERILEKRSGNTTCLRWKPTPNVATCGTSTYVFEKDIRD 62
           +QE++RKSSED ++ T + IIYE++LEKRSG+T  L WK TPNVATC TST+VFEKDI D
Sbjct: 242 MQEEIRKSSEDGAQPTPKKIIYEQVLEKRSGHTKGLGWKATPNVATC-TSTHVFEKDIGD 301

Query: 63  KYEKLQVEVKDLKEKN 78
           KYEKLQ +V +LKE+N
Sbjct: 302 KYEKLQTKVINLKEEN 316

The following BLAST results are available for this feature:

BLAST of Chy6G121050 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G121050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKB8	5.6e-17	67.11	DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Chy6G121050 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055007.1	3.35e-21	67.11	uncharacterized protein E6C27_scaffold43052G001590 [Cucumis melo var. makuwa]	[more]

BLAST of Chy6G121050 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 57..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G121050.1	Chy6G121050.1	mRNA