Chy6G120820 (gene) Cucumber (hystrix) v1

Overview
NameChy6G120820
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH06: 17432524 .. 17432960 (+)
RNA-Seq ExpressionChy6G120820
SyntenyChy6G120820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATACAAGACACCGATTGAAATGTCCCCTTACGCGATAGTCCTTGGGAAAGCATGCCACTTACCACTGGAGTTGAAGCACAAGGCGGTTTGGGCATGCAAAACATTGAACTTTGATCAGCACGCTGCAGAGAAGCAATATTACTTCAATTGCATGAGCTTCAAGAGTCGTGTTCTCAAGCCTATGAGAATTCCAAAATCTACAAGGAGAGGATAAAGGCATGGCATGATAATCGCATCCGTAAACGTGATTTAGCATTAGTCAGCAAGTGTTATTATTCAATTCACGTTTGCATCTGTTTCCAAGTAAGCTCTATTCACGATGGTCTAGGTCATTTTTAGTCAAGCAAGTTTTTCCAGATGGTGTAATGGAGATGACATCGTAAGATGGAACAAATGCGTTTAAGGTAAACGGATAGAGGCTCAAGGCGAACATTGAA

mRNA sequence

ATACAAGACACCGATTGAAATGTCCCCTTACGCGATAGTCCTTGGGAAAGCATGCCACTTACCACTGGAGTTGAAGCACAAGGCGTCGTGTTCTCAAGCCTATGAGAATTCCAAAATCTACAAGGAGAGGATAAAGGCATGGCATGATAATCGCATCCGTAAACGTGATTTAGCATTAGTCAGCAAGTGTTATTATTCAATTCACGTTTGCATCTGTCATTTTTAGTCAAGCAAGTTTTTCCAGATGGTGTAATGGAGATGACATCGTAAGATGGAACAAATGCGTTTAAGGTAAACGGATAGAGGCTCAAGGCGAACATTGAA

Coding sequence (CDS)

ATACAAGACACCGATTGAAATGTCCCCTTACGCGATAGTCCTTGGGAAAGCATGCCACTTACCACTGGAGTTGAAGCACAAGGCGTCGTGTTCTCAAGCCTATGAGAATTCCAAAATCTACAAGGAGAGGATAAAGGCATGGCATGATAATCGCATCCGTAAACGTGATTTAGCATTAGTCAGCAAGTGTTATTATTCAATTCACGTTTGCATCTGTCATTTTTAGTCAAGCAAGTTTTTCCAGATGGTGTAATGGAGATGACATCGTAAGATGGAACAAATGCGTTTAAGGTAAACGGATAGAGGCTCAAGGCGAACATTGAA

Protein sequence

IQDTD*NVPLRDSPWESMPLTTGVEAQGVVFSSL*EFQNLQGEDKGMA**SHP*T*FSISQQVLLFNSRLHLSFLVKQVFPDGVMEMTS*DGTNAFKVNG*RLKANIE
Homology
BLAST of Chy6G120820 vs. ExPASy TrEMBL
Match: A0A5A7TSQ9 (Putative retroelement OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2741G00170 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-06
Identity = 38/114 (33.33%), Postives = 55/114 (48.25%), Query Frame = 0

Query: 1   IQDTD*NVPLRDSPWESMPLTTGVEAQGVVFSSL*EFQNLQGEDKGMA**SHP*T*FSIS 60
           +QD   NV LR S WE +PLT G   +GV                             + 
Sbjct: 230 VQDAYWNVYLRASLWEGLPLTIGFGIEGV-----------------------------MG 289

Query: 61  QQVLLFNSRLHLS------FLVKQVFPDGVMEMTS*DGTNAFKVNG*RLKANIE 109
           ++  ++  ++ +S      F+VKQ+FP G +E+TS DGTNAFKVN   LKA ++
Sbjct: 290 RKAKIYKEKMKVSFGWSRPFMVKQIFPYGAVEITSLDGTNAFKVNRQGLKAYLK 314

BLAST of Chy6G120820 vs. ExPASy TrEMBL
Match: A0A5A7UE09 (Rve domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G001420 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 0

Query: 59  ISQQVLLFNSRLHL-----------SFLVKQVFPDGVMEMTS*DGTNAFKVNG*RLKANI 109
           + Q+VLLFNSRL L            F VKQ+F  GV+E+TS D TN FKVNG RLKA +
Sbjct: 202 VGQKVLLFNSRLQLFLDKLYLRWSRPFFVKQIFLHGVVEITSIDETNLFKVNGQRLKAYL 261

BLAST of Chy6G120820 vs. ExPASy TrEMBL
Match: A0A1S3CM09 (uncharacterized protein LOC103502497 OS=Cucumis melo OX=3656 GN=LOC103502497 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 0

Query: 59  ISQQVLLFNSRLHL-----------SFLVKQVFPDGVMEMTS*DGTNAFKVNG*RLKANI 109
           + Q+VLLFNSRL L            F VKQ+F  GV+E+TS D TN FKVNG RLKA +
Sbjct: 202 VGQKVLLFNSRLQLFLDKLYLRWSRPFFVKQIFLHGVVEITSIDETNLFKVNGQRLKAYL 261

BLAST of Chy6G120820 vs. ExPASy TrEMBL
Match: A0A1U7XTC2 (uncharacterized protein LOC104240991 OS=Nicotiana sylvestris OX=4096 GN=LOC104240991 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.3e-05
Identity = 31/59 (52.54%), Postives = 36/59 (61.02%), Query Frame = 0

Query: 57  FSISQQVLLFNSRLHL-----------SFLVKQVFPDGVMEMTS*DGTNAFKVNG*RLK 105
           F    +VLL+NSRL L            F V +VFP GV+E+TS DGTN FKVNG RLK
Sbjct: 881 FKPGDKVLLYNSRLRLFPGKLKSRWSGPFKVTEVFPSGVVEITSEDGTNTFKVNGQRLK 939

BLAST of Chy6G120820 vs. ExPASy TrEMBL
Match: A0A2P6SEK3 (Reverse transcriptase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0344611 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04
Identity = 30/63 (47.62%), Postives = 37/63 (58.73%), Query Frame = 0

Query: 57   FSISQQVLLFNSRLHL-----------SFLVKQVFPDGVMEMTS*DGTNAFKVNG*RLKA 109
            F  SQ+VLL+NSRLHL            F+VK+VFP G +E+      N FKVNG RLK 
Sbjct: 1284 FEPSQKVLLYNSRLHLFPGKLRSRWTGPFVVKRVFPFGAVEIEDPKNGNVFKVNGQRLKP 1343

BLAST of Chy6G120820 vs. NCBI nr
Match: KAE8648415.1 (hypothetical protein Csa_008526 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 8.73e-12
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 57  FSISQQVLLFNSRLHL--SFLVKQVFPDGVMEMTS*DGTNAFKVNG*RLKANIE 108
           FSI Q+VLLFNSRL     FLVK+VFP G +E+TS DGTN F+VNG RLKA ++
Sbjct: 61  FSIGQKVLLFNSRLRWFGPFLVKEVFPHGAVEITSTDGTNTFEVNGQRLKAYMD 114

BLAST of Chy6G120820 vs. NCBI nr
Match: XP_038899077.1 (uncharacterized protein LOC120086476 [Benincasa hispida])

HSP 1 Score: 61.2 bits (147), Expect = 7.42e-09
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0

Query: 61  QQVLLFNSRLHL-----------SFLVKQVFPDGVMEMTS*DGTNAFKVNG*RLK 104
           Q+VLLFNSRLHL            F++K+VFP G +E+T+ DGTNAFKVNG R+K
Sbjct: 101 QRVLLFNSRLHLFLGKLKSRWFGPFIIKEVFPHGAVELTNEDGTNAFKVNGQRVK 155

BLAST of Chy6G120820 vs. NCBI nr
Match: XP_038902330.1 (uncharacterized protein LOC120088966 [Benincasa hispida])

HSP 1 Score: 60.8 bits (146), Expect = 1.07e-08
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0

Query: 60  SQQVLLFNSRLHL-----------SFLVKQVFPDGVMEMTS*DGTNAFKVNG*RL 103
           SQ+VLLFNSRLHL            F++K+VFP G +E+T+ DGTNAFKVNG R+
Sbjct: 100 SQRVLLFNSRLHLFPGKLKSRWFGPFIIKEVFPHGAVELTNEDGTNAFKVNGQRV 154

BLAST of Chy6G120820 vs. NCBI nr
Match: XP_038874881.1 (uncharacterized protein LOC120067384 [Benincasa hispida])

HSP 1 Score: 58.9 bits (141), Expect = 4.08e-08
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 0

Query: 59  ISQQVLLFNSRLHL-----------SFLVKQVFPDGVMEMTS*DGTNAFKVNG*RLKANI 108
           + Q+V+LFNSRLHL            F++K +FP GV+E+T  DGTNAFKVN  R+K   
Sbjct: 80  VGQKVILFNSRLHLFLGKLKSRWLGPFMIKTIFPYGVVELTREDGTNAFKVNDQRVKPYF 139

BLAST of Chy6G120820 vs. NCBI nr
Match: XP_038891667.1 (uncharacterized protein LOC120081059 [Benincasa hispida])

HSP 1 Score: 58.9 bits (141), Expect = 5.27e-08
Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 0

Query: 59  ISQQVLLFNSRLHL-----------SFLVKQVFPDGVMEMTS*DGTNAFKVNG*RLKANI 108
           + Q+VLLFNSRLHL            F++K +FP G +E+T  DGTN FKVNG R+K   
Sbjct: 95  VGQKVLLFNSRLHLFPGKLKFRWSGPFIIKTIFPYGAVELTREDGTNIFKVNGQRVKPYF 154

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TSQ91.8e-0633.33Putative retroelement OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5A7UE091.1e-0552.46Rve domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A1S3CM091.1e-0552.46uncharacterized protein LOC103502497 OS=Cucumis melo OX=3656 GN=LOC103502497 PE=... [more]
A0A1U7XTC23.3e-0552.54uncharacterized protein LOC104240991 OS=Nicotiana sylvestris OX=4096 GN=LOC10424... [more]
A0A2P6SEK32.8e-0447.62Reverse transcriptase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0344611 PE=4 S... [more]
Match NameE-valueIdentityDescription
KAE8648415.18.73e-1264.81hypothetical protein Csa_008526 [Cucumis sativus][more]
XP_038899077.17.42e-0956.36uncharacterized protein LOC120086476 [Benincasa hispida][more]
XP_038902330.11.07e-0856.36uncharacterized protein LOC120088966 [Benincasa hispida][more]
XP_038874881.14.08e-0849.18uncharacterized protein LOC120067384 [Benincasa hispida][more]
XP_038891667.15.27e-0849.18uncharacterized protein LOC120081059 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 96..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy6G120820.1Chy6G120820.1mRNA