Chy6G120820 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATACAAGACACCGATTGAAATGTCCCCTTACGCGATAGTCCTTGGGAAAGCATGCCACTTACCACTGGAGTTGAAGCACAAGGCGGTTTGGGCATGCAAAACATTGAACTTTGATCAGCACGCTGCAGAGAAGCAATATTACTTCAATTGCATGAGCTTCAAGAGTCGTGTTCTCAAGCCTATGAGAATTCCAAAATCTACAAGGAGAGGATAAAGGCATGGCATGATAATCGCATCCGTAAACGTGATTTAGCATTAGTCAGCAAGTGTTATTATTCAATTCACGTTTGCATCTGTTTCCAAGTAAGCTCTATTCACGATGGTCTAGGTCATTTTTAGTCAAGCAAGTTTTTCCAGATGGTGTAATGGAGATGACATCGTAAGATGGAACAAATGCGTTTAAGGTAAACGGATAGAGGCTCAAGGCGAACATTGAA ATACAAGACACCGATTGAAATGTCCCCTTACGCGATAGTCCTTGGGAAAGCATGCCACTTACCACTGGAGTTGAAGCACAAGGCGTCGTGTTCTCAAGCCTATGAGAATTCCAAAATCTACAAGGAGAGGATAAAGGCATGGCATGATAATCGCATCCGTAAACGTGATTTAGCATTAGTCAGCAAGTGTTATTATTCAATTCACGTTTGCATCTGTCATTTTTAGTCAAGCAAGTTTTTCCAGATGGTGTAATGGAGATGACATCGTAAGATGGAACAAATGCGTTTAAGGTAAACGGATAGAGGCTCAAGGCGAACATTGAA ATACAAGACACCGATTGAAATGTCCCCTTACGCGATAGTCCTTGGGAAAGCATGCCACTTACCACTGGAGTTGAAGCACAAGGCGTCGTGTTCTCAAGCCTATGAGAATTCCAAAATCTACAAGGAGAGGATAAAGGCATGGCATGATAATCGCATCCGTAAACGTGATTTAGCATTAGTCAGCAAGTGTTATTATTCAATTCACGTTTGCATCTGTCATTTTTAGTCAAGCAAGTTTTTCCAGATGGTGTAATGGAGATGACATCGTAAGATGGAACAAATGCGTTTAAGGTAAACGGATAGAGGCTCAAGGCGAACATTGAA IQDTD*NVPLRDSPWESMPLTTGVEAQGVVFSSL*EFQNLQGEDKGMA**SHP*T*FSISQQVLLFNSRLHLSFLVKQVFPDGVMEMTS*DGTNAFKVNG*RLKANIE Homology
BLAST of Chy6G120820 vs. ExPASy TrEMBL
Match: A0A5A7TSQ9 (Putative retroelement OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2741G00170 PE=4 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.8e-06 Identity = 38/114 (33.33%), Postives = 55/114 (48.25%), Query Frame = 0
BLAST of Chy6G120820 vs. ExPASy TrEMBL
Match: A0A5A7UE09 (Rve domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G001420 PE=4 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05 Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 0
BLAST of Chy6G120820 vs. ExPASy TrEMBL
Match: A0A1S3CM09 (uncharacterized protein LOC103502497 OS=Cucumis melo OX=3656 GN=LOC103502497 PE=4 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05 Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 0
BLAST of Chy6G120820 vs. ExPASy TrEMBL
Match: A0A1U7XTC2 (uncharacterized protein LOC104240991 OS=Nicotiana sylvestris OX=4096 GN=LOC104240991 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 3.3e-05 Identity = 31/59 (52.54%), Postives = 36/59 (61.02%), Query Frame = 0
BLAST of Chy6G120820 vs. ExPASy TrEMBL
Match: A0A2P6SEK3 (Reverse transcriptase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0344611 PE=4 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04 Identity = 30/63 (47.62%), Postives = 37/63 (58.73%), Query Frame = 0
BLAST of Chy6G120820 vs. NCBI nr
Match: KAE8648415.1 (hypothetical protein Csa_008526 [Cucumis sativus]) HSP 1 Score: 67.4 bits (163), Expect = 8.73e-12 Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 0
BLAST of Chy6G120820 vs. NCBI nr
Match: XP_038899077.1 (uncharacterized protein LOC120086476 [Benincasa hispida]) HSP 1 Score: 61.2 bits (147), Expect = 7.42e-09 Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0
BLAST of Chy6G120820 vs. NCBI nr
Match: XP_038902330.1 (uncharacterized protein LOC120088966 [Benincasa hispida]) HSP 1 Score: 60.8 bits (146), Expect = 1.07e-08 Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0
BLAST of Chy6G120820 vs. NCBI nr
Match: XP_038874881.1 (uncharacterized protein LOC120067384 [Benincasa hispida]) HSP 1 Score: 58.9 bits (141), Expect = 4.08e-08 Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 0
BLAST of Chy6G120820 vs. NCBI nr
Match: XP_038891667.1 (uncharacterized protein LOC120081059 [Benincasa hispida]) HSP 1 Score: 58.9 bits (141), Expect = 5.27e-08 Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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