Chy6G120520 (gene) Cucumber (hystrix) v1

Overview
NameChy6G120520
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH06: 16851381 .. 16856986 (+)
RNA-Seq ExpressionChy6G120520
SyntenyChy6G120520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATCAGACAAAACTTTTGGGAAATTGCCAAAAATAGGCTAAAAATAGAGGGATAAAAAATTTTTGGGATTGATTTTGAAAAAGTTGATTTTTAGGACAAATTGAGGATGAATTGTCTAAATTACCCTTCTTTAATTTTTCCTTTATCTTTCCTTCCATTTTCTCTCTCATTTTCTTCTTTTATCTTTCCTTCCCTTCCATGGCACCTTTATTTTCTCCATCCATCAACACATTCTTCTTCTCACAGACGTAAAGACAATTCTTTCCTTTTCATCATTCTCTATTATGTCTCTATCTCTTTTTCCTCCCCTTATAAAGTTGATTTTGAAACTAATAGTGAAAGTTTGAAACGTGCGAGATAGGTGTGAGATGTGTGCGAGATGCATGCGAAATAAAACATTCGGCCTAATAAACTTACTAAACATGCAAAAAATCACTCTAAATGACTTAGGAGGGGTAGCAATTTGATTGTGAAACTCATAGTGAAAGTTTGAAACGTGCGAGATAGGTGCGGGATGGTTGCGAGATGCGTGCGAAACAAAACATCCAGCCTAATAAACTTACTAGATATACACAAAATCACTCTAAATGGCTTATGAGGGGTAACAATTTGATTGTGAAACTCATAGTGAACGTTTGAAACGTGGGAGATAGGTGAGAGATAGGTGCGTAGAACGATCCTTGTTATTGGTACGTATAACGACCCAACTTTTCAAATCTAAGTCGAAGTCATTATTTTTGCACAAAACAATTTGTTTGACACAAGACATAGTAAGCTTTAGTTAAAACAATAAGAATTCGAAGAAAACTTTATTTGGGCCCTGTTTCAAAATATAAAATTTTAAGGTACTGTTTACAAAAAAATAACTATTTGTAAACTCAGTTCCATAAAAAAATATATTTTAAAATCATCAGCGGAAGTAGTTTAAAAGACAGTCCTCTATGGCAATCACGACTCCTCTTGTCCCTCGTCGGTTTGCCCCTCGAGTTACCTTTGCCTGAAAAGTTAAACATAAAAGAGTGAGTATAAATATACCCAGTAAGAGACCCACTACTGGTCTCGTTAGGAAAAAAATAAATTATTTACTTCCTATGGAATACCCTGCACGGTCACAGTTTTGTGATCCCGTAGGATACACATAATCAGTCTAACGCCCGAGGGACGCATAAATCAGTCTAGTGTTCTGCAGAAACACATATAAGTCGAGTGCTCCCGAAGGATGCACATATCAGTCTAGTGCTCCCGAAGGATGCAAAAAAAAAGGTGATGATCCCGTAGGACACCTGCAAGGTAACTACCCAATAGGAAACTAATAATTTTCCCCTCAGTCCATTCTAAACATCTTAACATTCATTTACAATCCAGTTAAATGTTCTCATCACATAAACTCTTCATTTAACCTCAAACAACCATTTTATTCTAATTTAGTCCAAGGTCAGTCAAAAACATATCAGTACATCAGTCAACAAACTAAATAATCATAACATCCTCCTCAGTCTACAAGGGCACAACTATGACGTCTCCTCCGTTCACAAGCACACAGCCATAACAGTATATCATACATTCAGTTTAAACAACAATCTACCAGTTAAAATCCACACTTTATATAAGCAACATCTACGAGATTCAGTCATTTCCACATCCTTATGTTTGTACATATACATAACCAGTCAATCATAACATACACTCAACCGCAAGTCCACATCAATCCATGCATATATATATAAATTTTCTCCCAATCAAACACGGTATACATTAAACATTCAGTCCACATCCAAACATACATCATAACCATCATCCCTACTCAGTCCAGATATAACATTACGGTCCATACAGTCCATACATCTTAATTTTGTTATTGAGTCCAGTAGAAAGTCCCTTACCTCACTTTTATGCAAGTTCTTCAATTGAACTAATTCCAATAAATCAATTCCTAAACATAACCAAACATAAAATCAACATCCTTCTAAATAGTTTCATCCATTCAAATCACCCATACGTAAATTCCACAACTTACCCAAGAAGTGGAGAAACGAACTCCAACGAAGCTTATGGCAAAACTCAAGGACCCTAACTCCAAATCACCAATATCGCCTTCAACAACAAACATCAATTCAACCAATTAAACAAACATCACATCTCAATGTATTTACAAAAGCAAAAGCAAAACCTTATAACCCAACAATCTCATCTTTACCAAACAAACTTACAACAAAACTTTGACGATCGATAGCAAAAATAGAAGCAGCGGCAGAACCTACACGAAAGAAATCGTGCAAAACCGATCTGCACGTGGATCGGCCCGCGATTCGTAAATGGACAGCAGGTGCAGACGAAGGCAGAATGGTTCAGATGTTCAACAACAGCTACGCGCGACGGAGAGTAGTCCGTCAACGTAGTCGAACTCGTGCGATGCGGCCTGATGAGAAAAAGACGTACGACTTCGATTGGACTTTGGTCGGTCGCAAAGTGTGAGGGACGCAACGGCTCGAGGAGTGACGGTTGGAGACGAATCGCGAACAAGAACGCGGTGGCTGGTTTCGGCTTCAATGGATCGCAACGACGAAACACGAGCGGCGGGGATGTGGCGGCTTGGGATGCGGTGTCTGAGCTACCGATGTCGACGGTGAACGGAAAAAGAAAGGAGAAAATTGAAGGTGGCCGGCGGTGAGGTTGGAGTGTGATTGGTGGCTAGGGCACAAAGACGAAGAAGAAGAAAAACGGAAGAAGGGGGAGCGCGGGAGGAAGAAGAAGAAAGGAAATTTTAATTTCTTTTTTTAAAAAAAAATAATTAATAATAATCAAACTAATAATAATAATAATAATAATAATAATAAAGTTAAAATAATTATTATTATCACTATTTATTTTACTTCTCTTTTTTTTTTTTTTCTTTTTTATAACTAAACCACTTTTCTTCAACATAAAACCAAATTACATTAACACCCAAATTTTTTAAATAAAACTTGATAAATAACATAATTTTATTAGGATTAAATACCATAAAGTTTTGGAGTGTTAAAGTACGGATTTACATTATACCATAATTTCATCATCTTCATTATTATTGACTAATTCTTCATGAAACTGTTTTATCATCGTCATTTTATGATTTTATGCATGTTTATTAAGTTTAATAAGTCTTTATGTTTTATCTTGCACGCATCTCGAAACTATCTTGCACCATCTTGCACCTATCTCGCACATTTCAAATTTTCACTAGTTTCACAATCAAATTGCTACCCCTTCTAAGTTATTAAGGGTGATTTTGTGCATGTTTATTAAATTTATTAGGCCCTTATGTTTTATCTCGCAACTATCTCCTAGCATCTCGCACGTTCCAAACTTTCACTATGAGTTTCATAATCAAATTGCTACCCCTTCTAAGTCACTTAAAGTGATTTTGTGCATGTTTATTAAGTTTATTAAGCCCTTATGTTTTATCTCGCACGCATCTCGCACCTACCTCGCACATATCTCGCATGTTTCAAACTTTCACTATGAGTTTCACAATCAAATTGCTACCCCTTCTAAGTCATTTAGGGTGATTCTATGCATGTGTAGTAAGTTTATTAAGCCCTCATGTTTTATCTTGCACCTATCTCGCACCTATCTCGCACATGTTTTTGTGTTGGAAGATAAAAAAAAAAAAAAGTAATACATAAAATCCTAAAAAAATTGTATGCTAAAATAAAAACATCAAAATCTAGGTCATTGAGACCCCTCATACGCAACCTATAATTAACTCAAAAAAAAAAAAAAAAACTTTTAACTTGAAATTTGCATTATCACAACTAGATATAATTAATAGTTTCCAACTTATTTTATACAACTAACATATAAATATTCAACAAACTAAAACTTGGTACACAAATGAACATATGCACAAAATGAAGTTAATACAATTTCATCATATAAACAAAACGTGACCACAAACAAAACATCCTAATAGTGTATATCAAATCTAACAGGTTGTCTATTGGTATATTGGTATTGTGATCATTGTAATGACCCACCATGACTCTTTTGTAGCCACCAATCACCCCATTTTCTTGGAATCATGTTAAGTTACTGCTCGCTGACGAACCTTCGATGGAGACTGAGAAGTGAGAAGCTCAGTACATTATTTGAGCATACTGCAAAACAAAAATGTGTAGAGTAAAACAAATAAACTTGGATCTAACTCAATGCATGTTTTAAAAATTTTGAGCTAGCTACCTTACGACATTTTGGAACAAGAAGTTCATGTCACTATGGCTACCAAAAGCATCCAAAAATTGCTTAAATGACACTTTTTAAATCTCAACCATCTAAAAGGTTCTTAAGTAGCCATTTCACTCCCAACCTCTTAAAAAGTGCTACATTCCAACTCCAAAAACAGTTGGAGTGTTTTCATTTTATTCTACTAATTTGCATGATGCTTGAATATAATAGCTCCAAATTTTCATCCAGCGAAATTAATCAAACAGAATAGGATTGTGAATTCTTTATAGATTATAAAGATATCGTTTGATCAATTTCAGTACTAACTTCATTCTAGCCAAAGATGACTTCAATTACTGAAACAGAATTTCCAAACTAATTAGATGCTTTTTCCTAAAGTTTTTAAGGTCAATTTTCAATTTCCAGAACGGAATTCATAATTTCTAAACCTAGAAACAAGAAGATAACACTCGAAATTTGAAAGAGAGAAACAGAAAATCAGGGATTAAGGACGTACTAGAAGCAATTTGATGATGTTGCTAGCGCCGAAGATACAGTGAGCAATAGTGAACTTGAGAGGCTTAGAGGGAGGAAAATAGGCCGCCAATACGCATTTCTCGGCGCATCTCCAGTAGAGAATCTTACACGCCGCATACGAACTAACCACCACGGAGGCCTGAACGGTCTGCAACAGTGAAGGAGACGCGACGACGATTGAGAAAGGAGAAGAGTTGAAGTCGGACTGCACTTTGCTTTAGTAGAAGAGCTGAGGGAGAAGGAGAAAGCTACGCAAGAAGAGAACGTGAAGGAGAAGGAAAATGAGAAAATAGCACAAAGTTAATTTTTATGGTTTTTCTAATTAAAGGGTAACATAGACTTTTCACAACTTATTTGTCCTAAAAGTCCTCTTTTTGAAAACCCATCTCAAAACTCTCTATATCCATCCAAATAATCTCATTTTTTGCAATTTCCTAAAACTTTTACCACAAACATGGATATGTAAATGCGGGGACAAATCAACATCCTATATCAACTCACCCAAATATTTCCCAAGTTAAAAAGTATTTTTTTACTCAAACATAGAAGATTGAGAGTTATTTTTGTTATAATTTAGCATTTTTTTTTCTAAACAAATCAGTTCTATAATTAGGTCGTTTCTACGTCAACACTTCCTTTAAGTGGTCGCTCGCCCCCTTTCTCGAGGCTTTTCTTTCTGTTAGGTTTCTTCCTCCGCCGCAGCTGCTCGCCGGAGCGCTGTCTTCACCATCTTATTCTTTTTATATCCCTCTCTTCTGCAACCGCACGCCCCCACTGCCTTCAACGCCAGCTGATCGACACGGAGCCCCATTACCCAGTCGCTCGCCGCTTAGCTTTCTTTTTCATTTTTGGAAATCTTTGA

mRNA sequence

ATGATATCAGACAAAACTTTTGGGAACACAAACATGGATATGTTTCTTCCTCCGCCGCAGCTGCTCGCCGGAGCGCTGTCTTCACCATCTTATTCTTTTTATATCCCTCTCTTCTGCAACCGCACGCCCCCACTGCCTTCAACGCCAGCTGATCGACACGGAGCCCCATTACCCAGTCGCTCGCCGCTTAGCTTTCTTTTTCATTTTTGGAAATCTTTGA

Coding sequence (CDS)

ATGATATCAGACAAAACTTTTGGGAACACAAACATGGATATGTTTCTTCCTCCGCCGCAGCTGCTCGCCGGAGCGCTGTCTTCACCATCTTATTCTTTTTATATCCCTCTCTTCTGCAACCGCACGCCCCCACTGCCTTCAACGCCAGCTGATCGACACGGAGCCCCATTACCCAGTCGCTCGCCGCTTAGCTTTCTTTTTCATTTTTGGAAATCTTTGA

Protein sequence

MISDKTFGNTNMDMFLPPPQLLAGALSSPSYSFYIPLFCNRTPPLPSTPADRHGAPLPSRSPLSFLFHFWKSLX
Homology
[Close]
BLAST of Chy6G120520 vs. ExPASy TrEMBL
Match: A0A0A0L8N3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G585940 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.6e-04
Identity = 37/72 (51.39%), Postives = 41/72 (56.94%), Query Frame = 0 

Query: 1  MISDKTFGNTNMDMFLPPPQLLAGALSSPSYS-FYIPLFCNRTPP----LPSTPADRHGA 60
          M SDKT   TN+DMF PPPQLLAGALSSPSYS   I L  +  PP          D H  
Sbjct: 1  MKSDKTL-TTNIDMFPPPPQLLAGALSSPSYSILLISLSSSTAPPHFLQRQLIDTDPH-Y 60

Query: 61 PLPSRSPLSFLF 68
          P+  R P  F+F
Sbjct: 61 PVARRLPFFFIF 70

[Close]
BLAST of Chy6G120520 vs. NCBI nr
Match: KGN58183.1 (hypothetical protein Csa_017506 [Cucumis sativus])

HSP 1 Score: 51.6 bits (122), Expect = 1.54e-06
Identity = 28/44 (63.64%), Postives = 31/44 (70.45%), Query Frame = 0 

Query: 1  MISDKTFGNTNMDMFLPPPQLLAGALSSPSYSFYIPLFCNRTPP 44
          M SDKT   TN+DMF PPPQLLAGALSSPSYS  +    + T P
Sbjct: 1  MKSDKTL-TTNIDMFPPPPQLLAGALSSPSYSILLISLSSSTAP 43

The following BLAST results are available for this feature:
BLAST of Chy6G120520 vs.
Match NameE-valueIdentityDescription
BLAST of Chy6G120520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8N39.6e-0451.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G585940 PE=4 SV=1[more]
BLAST of Chy6G120520 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58183.11.54e-0663.64hypothetical protein Csa_017506 [Cucumis sativus][more]
BLAST of Chy6G120520 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy6G120520.1Chy6G120520.1mRNA