Chy6G120190 (gene) Cucumber (hystrix) v1

Overview
NameChy6G120190
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH06: 16220834 .. 16221914 (-)
RNA-Seq ExpressionChy6G120190
SyntenyChy6G120190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGGCAAGGTGAGGTCCCGGGCACAGAGCTATAATGCTTCTCATGCGCTATGGTACAATGTTAGGGGTTAGTAAAATATGGAAAGCGTCGTGGTGCTCTCGACTTTTTATAAATAACATTTTTCAAACTAAGACTCTAACGAACCAACTTTTTAAATTAAGTTGAGGTCATTACTAAAATAAAAAATAAATAATATTTTTAATTCAAAATCATACAAAGTTTAACTCATTTTATTAAAGAAATATATATAAAAATATAATCTCATGCAGAAAACCAAATGCTTAGAAAAATAAATAACGAAATAATTTATTCGGACCCTGAGTAAAACATAAAGAAGCCATAAGTTTAAATAACAACTATCTATCAATAGTAATAACATTCTAAAATCATCAAATCAAAATAGGGTATCAGAAGGATCAGTCATAACTAGTCTCATTGGCACGGTCATGGGTTCTTATTGTCACTTGCTAGCTTTCCTTAACTTTTATCTAAAAAATAAACATGGAAATGGTGAGTATATAAAATAGGGTTGTGGAGAAGAATAACATATTATAGGTTTTACTTTGGGAAAATAGCAAAAATAATTTTAAATTGTTAGAATAGCAAAACATAAAAAATAAAACTATAAATAAATAAAACAATCCCTCAAATGCCCCTATCCAAACTGAAAAATACAAATTGTTTACTCAAAAACATAAACCCCAATTACATTGTAATTGAAATAACAAATGCTACAAAAAAAAAAAAAACTTTAACAAAAAGCTACGTGCGGTACTTGAAATCAATAATCGCTGCAAGTGAAGGAAGAAGACGACTTACGTATACAAAGACGATCTAACTAAGAAGAACCACTCACCACCCTCGTCATCGTCCTCACTGCAACGCCAACCGGAGGAGATCAAGAAAGTGAAGAAGAGAGTGACATTTGTTGACATTGAACCAGTGATAATCACCATTAGTACTGAGAGGAGGAGGAGTTTGAGGATGAACGAAGAAGAAAGTGAGAATTATGGTGAAATTGAAGAAACAAGAAGCGAATCAAATGCTTTCGAGGTGCTCCAATGGTGGCGTTCTTGA

mRNA sequence

ATGATGGGCAAGGTGAGGTCCCGGGCACAGAGCTATAATGCTTCTCATGCGCTATGGAAGAAGACGACTTACGTATACAAAGACGATCTAACTAAGAAGAACCACTCACCACCCTCGTCATCGTCCTCACTGCAACGCCAACCGGAGGAGATCAAGAAAGTGAAGAAGAGAGTGACATTTGTTGACATTGAACCAGTGATAATCACCATTAGTACTGAGAGGAGGAGGAGTTTGAGGATGAACGAAGAAGAAAGTGAGAATTATGGTGAAATTGAAGAAACAAGAAGCGAATCAAATGCTTTCGAGGTGCTCCAATGGTGGCGTTCTTGA

Coding sequence (CDS)

ATGATGGGCAAGGTGAGGTCCCGGGCACAGAGCTATAATGCTTCTCATGCGCTATGGAAGAAGACGACTTACGTATACAAAGACGATCTAACTAAGAAGAACCACTCACCACCCTCGTCATCGTCCTCACTGCAACGCCAACCGGAGGAGATCAAGAAAGTGAAGAAGAGAGTGACATTTGTTGACATTGAACCAGTGATAATCACCATTAGTACTGAGAGGAGGAGGAGTTTGAGGATGAACGAAGAAGAAAGTGAGAATTATGGTGAAATTGAAGAAACAAGAAGCGAATCAAATGCTTTCGAGGTGCTCCAATGGTGGCGTTCTTGA

Protein sequence

MMGKVRSRAQSYNASHALWKKTTYVYKDDLTKKNHSPPSSSSSLQRQPEEIKKVKKRVTFVDIEPVIITISTERRRSLRMNEEESENYGEIEETRSESNAFEVLQWWRS*
Homology
BLAST of Chy6G120190 vs. ExPASy TrEMBL
Match: A0A0A0KYE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.2e-14
Identity = 50/81 (61.73%), Postives = 59/81 (72.84%), Query Frame = 0

Query: 20  KKTTYVYKDDLTKKNHSPPSSSSSLQRQPEEIKKVKKRVTFVDIEPVIITISTER-RRSL 79
           KKT YVY+D+LTKKNHSPPSSSSS Q QPEEIKKVKKRV F D EPVII IST+R    L
Sbjct: 26  KKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVIIAISTDREEEEL 85

Query: 80  RMNEEESENYGEIEETRSESN 100
            +  E+      ++ T+ E+N
Sbjct: 86  EVETEKKVVRITVKLTKQEAN 106

BLAST of Chy6G120190 vs. ExPASy TrEMBL
Match: A0A5D3D246 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003900 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-13
Identity = 48/67 (71.64%), Postives = 51/67 (76.12%), Query Frame = 0

Query: 20 KKTTYVYKDDLTKKNHSPPSSSSSLQRQPEEIKKVKKRVTFVDIEPVIITISTERRRSLR 79
          KKTTYVY+DDLTKK HSPP SSSS Q QP EIKKVKKRV F D EPVII IST+R     
Sbjct: 26 KKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKVKKRVRFADTEPVIIAISTDREE--- 85

Query: 80 MNEEESE 87
            EEE+E
Sbjct: 86 -EEEETE 88

BLAST of Chy6G120190 vs. ExPASy TrEMBL
Match: A0A1S3BS40 (uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-13
Identity = 48/67 (71.64%), Postives = 51/67 (76.12%), Query Frame = 0

Query: 20 KKTTYVYKDDLTKKNHSPPSSSSSLQRQPEEIKKVKKRVTFVDIEPVIITISTERRRSLR 79
          KKTTYVY+DDLTKK HSPP SSSS Q QP EIKKVKKRV F D EPVII IST+R     
Sbjct: 26 KKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKVKKRVRFADTEPVIIAISTDREE--- 85

Query: 80 MNEEESE 87
            EEE+E
Sbjct: 86 -EEEETE 88

BLAST of Chy6G120190 vs. ExPASy TrEMBL
Match: A0A0A0KZ22 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091930 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.8e-11
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 0

Query: 20 KKTTYVYKDDLTKKNHSPPSSSSSLQRQPEEIKKVKKRVTFVDIEPVIITISTERRRSLR 79
          KK TYVY+DDLTKKNHSPPSSSSS QRQ +EIKKVKKRV FVD EP    +  E  +++R
Sbjct: 2  KKATYVYRDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEPEEEELEDETEKNVR 61

Query: 80 M 81
          +
Sbjct: 62 I 62

BLAST of Chy6G120190 vs. NCBI nr
Match: KAE8649206.1 (hypothetical protein Csa_015041 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 3.96e-20
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 0

Query: 20 KKTTYVYKDDLTKKNHSPPSSSSSLQRQPEEIKKVKKRVTFVDIEPVIITISTER 74
          KKT YVY+D+LTKKNHSPPSSSSS Q QPEEIKKVKKRV F D EPVII IST+R
Sbjct: 18 KKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVIIAISTDR 72

BLAST of Chy6G120190 vs. NCBI nr
Match: XP_011653217.1 (uncharacterized protein LOC105435188 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 4.88e-20
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 0

Query: 20 KKTTYVYKDDLTKKNHSPPSSSSSLQRQPEEIKKVKKRVTFVDIEPVIITISTER 74
          KKT YVY+D+LTKKNHSPPSSSSS Q QPEEIKKVKKRV F D EPVII IST+R
Sbjct: 26 KKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVIIAISTDR 80

BLAST of Chy6G120190 vs. NCBI nr
Match: XP_008451951.1 (PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo] >KAA0044901.1 uncharacterized protein E6C27_scaffold74G001940 [Cucumis melo var. makuwa] >TYK16569.1 uncharacterized protein E5676_scaffold21G003900 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 5.27e-19
Identity = 48/67 (71.64%), Postives = 51/67 (76.12%), Query Frame = 0

Query: 20 KKTTYVYKDDLTKKNHSPPSSSSSLQRQPEEIKKVKKRVTFVDIEPVIITISTERRRSLR 79
          KKTTYVY+DDLTKK HSPP SSSS Q QP EIKKVKKRV F D EPVII IST+R     
Sbjct: 26 KKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKVKKRVRFADTEPVIIAISTDREEE-- 85

Query: 80 MNEEESE 86
            EEE+E
Sbjct: 86 --EEETE 88

BLAST of Chy6G120190 vs. NCBI nr
Match: XP_038906331.1 (uncharacterized protein LOC120092170 [Benincasa hispida])

HSP 1 Score: 70.1 bits (170), Expect = 1.46e-12
Identity = 44/67 (65.67%), Postives = 49/67 (73.13%), Query Frame = 0

Query: 20 KKTTYVYKDDLTKKNHSPPSSSSSLQRQPEEIKKVKKRVTFVDIEPVIITISTERRRSLR 79
          KKTTYVY+DDL+KK  SPP SSS  Q QPE IKKVKKRV F D EPVII I+ +  RS  
Sbjct: 26 KKTTYVYRDDLSKKKQSPPPSSS--QPQPE-IKKVKKRVRFADTEPVIIAITDKEERS-- 85

Query: 80 MNEEESE 86
            EEE+E
Sbjct: 86 -TEEETE 86

BLAST of Chy6G120190 vs. NCBI nr
Match: KAG6600516.1 (hypothetical protein SDJN03_05749, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031155.1 hypothetical protein SDJN02_05195, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.8 bits (138), Expect = 7.96e-08
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 22 TTYVYKDDLTKKNHSPPSSSSSLQRQPEEIKKVKKRVTFVDIEPVIITIS----TERRRS 80
          TTYVY+DDL KK  SP S     Q+QPE IKKVKKRV F + EPVII I     TE++R 
Sbjct: 32 TTYVYRDDLNKKKQSPSS-----QQQPE-IKKVKKRVRFAETEPVIIAIDAEEETEKKRV 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KYE15.2e-1461.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1[more]
A0A5D3D2462.0e-1371.64Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BS402.0e-1371.64uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=... [more]
A0A0A0KZ221.8e-1167.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091930 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAE8649206.13.96e-2081.82hypothetical protein Csa_015041 [Cucumis sativus][more]
XP_011653217.14.88e-2081.82uncharacterized protein LOC105435188 [Cucumis sativus][more]
XP_008451951.15.27e-1971.64PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo] >KAA0044901.1 unc... [more]
XP_038906331.11.46e-1265.67uncharacterized protein LOC120092170 [Benincasa hispida][more]
KAG6600516.17.96e-0857.14hypothetical protein SDJN03_05749, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..50

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy6G120190.1Chy6G120190.1mRNA