Chy6G119050 (gene) Cucumber (hystrix) v1

Overview
NameChy6G119050
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionPhotosystem I P700 chlorophyll a apoprotein A1
LocationchrH06: 14043089 .. 14044666 (+)
RNA-Seq ExpressionChy6G119050
SyntenyChy6G119050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCGACTCTTGGAATTTTTCAAATTTTCATCGAAAAGAATTCGTCTATCCTCCATTCGGAGAGAGAAAGAGGGAAACCCTTTATCTCCAGATTTTCGAGGAGAACTTGCAAAAGTCTCGAATGAACCTCCTGAACCTTACCCGTCTGCCTATATGCAAAAGGAAAGAAAAGCAGGGAAAGTGGAAAACCAGGTACAGTTGCCATAGAGTATACATGATAGAATACTTGCTGTCTATCTCGACCTAGAGCCTACTTTCCTACTGGATTGGGAATGAGCCTAGAAAACGACTCCTACACTGGTTGGAAGCAAAGGGGGACTGGAGGGATAGTAACTCCTACTGCCTACTCTAATTAGATGGCCTTACCCTAGCATTTGACTTAGTGCTTTAACAGCTTTTTTTTTGGAAGGCAATCGCATATTTCATTGCGCCTAATACTTCGGATATTGATAGATGAAAAATAGCATTTTACCGAGGGGCAGTTTCAGTCTACCTTTCATCTGCTGATGCTGATTCCCACCGAAAAGAAAGCGGACGAGAGCTCTCCACCACTAGTGGACTGCGGTCCAGGAGATGGCAAAGAATATTGCGTCTGTGGAAAAAGAGGATGAAATTATAGACAGTTAAGTGAGTCCGTATAAGTCGTTGTGCCCTCTGAGGCTGATCTTGCAGACAAGTGGAAAGAATCTTATATCAAGTCCACGTAGCGTTAATTCACTCATCAATCTCATTCCCAAAGAAACTCATGAAATCGGGACTTATTAGAATAGAATAAGGGCTAGAACCCGGCTCAGAATATCCCATCAATCGAATCGCTTTTTTGAGAAATACGAGACATCTAAGTCATACAAGTAAAGAGATATATTCATTGATAAGAAAAAATGTGAACGGTGATTGGATTGATGATAAAATCCAATCCTGGGTCTGGAACAGTGATTCGATTGATGATAAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACAGAAAAAAGGATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTGGTTATCAAATGATTGAACAACCGTAGCGTAGTGGGCTTTTCTTATGGCCTATTAGTTCGAACTTGGCTCCGCTCCATAGGCTTTCATCTAAATAGTAGGTTTCAAGTCCAAGAACAGCCTAGGGATCAGAAGTTCAAGCAAAGCAAAGGCTCAATGCAATATGAGTTGCGCACAAAAGAAAAAAAAAGGTGAATTTCCCCGACCCAGAAATATCCATTCTAAAGTGAGAGGTCGAATCCTGGGTTTATATACCCCGTGGGTTGAGACAAACAAATATCTCATGGTTTTTCAGATGTGGCGAGCATCTGGAATAACTAATGAATTACAACTCTATTGCACCGCAATTGGTGCATTAGTCTTTGCAGCCTTAATGCTTTTTGCTGGTTGGTTTCATTATCACAAGGCTGCTCCAAAATTGGCTTGGTTTCAAGATGTAGAATCCATGTTGAATCACCATTTAGCGGGTCTGCTAGGACTTGGGTCTCTGATTTTGCTAGTCAAAGAAAGGTCCAAGTGA

mRNA sequence

ATGCTTCGACTCTTGGAATTTTTCAAATTTTCATCGAAAAGAATTCGTCTATCCTCCATTCGGAGAGAGAAAGAGGGAAACCCTTTATCTCCAGATTTTCGAGGAGAACTTGCAAAAGTCTCGAATGAACCTCCTGAACCTTACCCGTCTGCCTATATGCAAAAGGAAAGAAAAGCAGGGAAAGTGGAAAACCAGTTTCAGTCTACCTTTCATCTGCTGATGCTGATTCCCACCGAAAAGAAAGCGGACGAGAGCTCTCCACCACTAGTGGACTGCGGTCCAGGAGATGGCAAAGAATATTGCATGTGGCGAGCATCTGGAATAACTAATGAATTACAACTCTATTGCACCGCAATTGGTGCATTAGTCTTTGCAGCCTTAATGCTTTTTGCTGGTTGGTTTCATTATCACAAGGCTGCTCCAAAATTGGCTTGGTTTCAAGATGTAGAATCCATGTTGAATCACCATTTAGCGGGTCTGCTAGGACTTGGGTCTCTGATTTTGCTAGTCAAAGAAAGGTCCAAGTGA

Coding sequence (CDS)

ATGCTTCGACTCTTGGAATTTTTCAAATTTTCATCGAAAAGAATTCGTCTATCCTCCATTCGGAGAGAGAAAGAGGGAAACCCTTTATCTCCAGATTTTCGAGGAGAACTTGCAAAAGTCTCGAATGAACCTCCTGAACCTTACCCGTCTGCCTATATGCAAAAGGAAAGAAAAGCAGGGAAAGTGGAAAACCAGTTTCAGTCTACCTTTCATCTGCTGATGCTGATTCCCACCGAAAAGAAAGCGGACGAGAGCTCTCCACCACTAGTGGACTGCGGTCCAGGAGATGGCAAAGAATATTGCATGTGGCGAGCATCTGGAATAACTAATGAATTACAACTCTATTGCACCGCAATTGGTGCATTAGTCTTTGCAGCCTTAATGCTTTTTGCTGGTTGGTTTCATTATCACAAGGCTGCTCCAAAATTGGCTTGGTTTCAAGATGTAGAATCCATGTTGAATCACCATTTAGCGGGTCTGCTAGGACTTGGGTCTCTGATTTTGCTAGTCAAAGAAAGGTCCAAGTGA

Protein sequence

MLRLLEFFKFSSKRIRLSSIRREKEGNPLSPDFRGELAKVSNEPPEPYPSAYMQKERKAGKVENQFQSTFHLLMLIPTEKKADESSPPLVDCGPGDGKEYCMWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLILLVKERSK*
Homology
BLAST of Chy6G119050 vs. ExPASy Swiss-Prot
Match: Q2QD89 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psaA PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.0e-32
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 102 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 161
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 162 GLGSL 167
           GLGSL
Sbjct: 204 GLGSL 208

BLAST of Chy6G119050 vs. ExPASy Swiss-Prot
Match: Q0ZJ20 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Vitis vinifera OX=29760 GN=psaA PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.0e-32
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 102 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 161
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 162 GLGSL 167
           GLGSL
Sbjct: 204 GLGSL 208

BLAST of Chy6G119050 vs. ExPASy Swiss-Prot
Match: Q7YJX2 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Calycanthus floridus var. glaucus OX=212734 GN=psaA PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-31
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 102 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 161
           +WRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL
Sbjct: 144 LWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 162 GLGSL 167
           GLGSL
Sbjct: 204 GLGSL 208

BLAST of Chy6G119050 vs. ExPASy Swiss-Prot
Match: Q09X17 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Morus indica OX=248361 GN=psaA PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.5e-31
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 102 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 161
           +WRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL
Sbjct: 144 IWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 162 GLGSL 167
           GLGSL
Sbjct: 204 GLGSL 208

BLAST of Chy6G119050 vs. ExPASy Swiss-Prot
Match: A0A335 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Coffea arabica OX=13443 GN=psaA PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.9e-31
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 102 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 161
           +WRASGITNELQLYCTAIGAL+FAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL
Sbjct: 144 IWRASGITNELQLYCTAIGALIFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 162 GLGSL 167
           GLGSL
Sbjct: 204 GLGSL 208

BLAST of Chy6G119050 vs. ExPASy TrEMBL
Match: A0A218KG56 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus var. hardwickii OX=319220 GN=psaA PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.8e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 102 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 161
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 162 GLGSL 167
           GLGSL
Sbjct: 204 GLGSL 208

BLAST of Chy6G119050 vs. ExPASy TrEMBL
Match: A0A292G374 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Vitis x champinii OX=884146 GN=psaA PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.8e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 102 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 161
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 162 GLGSL 167
           GLGSL
Sbjct: 204 GLGSL 208

BLAST of Chy6G119050 vs. ExPASy TrEMBL
Match: A0A5J6WDA0 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Vitis hancockii OX=1046262 GN=psaA PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.8e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 102 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 161
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 162 GLGSL 167
           GLGSL
Sbjct: 204 GLGSL 208

BLAST of Chy6G119050 vs. ExPASy TrEMBL
Match: A0A1X9Q1T9 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psaA PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.8e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 102 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 161
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 162 GLGSL 167
           GLGSL
Sbjct: 204 GLGSL 208

BLAST of Chy6G119050 vs. ExPASy TrEMBL
Match: A0A1C9U812 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Vitis amurensis OX=103351 GN=psaA PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.8e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 102 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 161
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 162 GLGSL 167
           GLGSL
Sbjct: 204 GLGSL 208

BLAST of Chy6G119050 vs. NCBI nr
Match: WP_203544736.1 (hypothetical protein, partial [Desulfovibrio sp. JC022] >NDV25020.1 photosystem I core protein PsaA [Desulfovibrio sp. JC022])

HSP 1 Score: 137 bits (344), Expect = 1.06e-37
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 102 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 161
           MWRASGIT+ELQLYCTAIGAL+FAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL
Sbjct: 76  MWRASGITSELQLYCTAIGALIFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 135

Query: 162 GLGSL 166
           GLGSL
Sbjct: 136 GLGSL 140

BLAST of Chy6G119050 vs. NCBI nr
Match: AOW69021.1 (orf113b [Brassica oleracea var. capitata])

HSP 1 Score: 136 bits (342), Expect = 3.85e-37
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 102 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 161
           +WRASGIT+ELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL
Sbjct: 90  LWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 149

Query: 162 GLGSL 166
           GLGSL
Sbjct: 150 GLGSL 154

BLAST of Chy6G119050 vs. NCBI nr
Match: RYR38811.1 (hypothetical protein Ahy_A09g044022 [Arachis hypogaea])

HSP 1 Score: 135 bits (341), Expect = 4.06e-37
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 102 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 161
           +WRASGIT+ELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL
Sbjct: 57  IWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 116

Query: 162 GLGSL 166
           GLGSL
Sbjct: 117 GLGSL 121

BLAST of Chy6G119050 vs. NCBI nr
Match: PNT44002.1 (hypothetical protein POPTR_003G065200, partial [Populus trichocarpa])

HSP 1 Score: 137 bits (346), Expect = 5.12e-37
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 102 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 161
           +WRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL
Sbjct: 127 IWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 186

Query: 162 GLGSL 166
           GLGSL
Sbjct: 187 GLGSL 191

BLAST of Chy6G119050 vs. NCBI nr
Match: AGY62833.1 (orf167 [Eruca vesicaria subsp. sativa])

HSP 1 Score: 135 bits (341), Expect = 5.46e-37
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 102 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 161
           +WRASGIT+ELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL
Sbjct: 90  IWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 149

Query: 162 GLGSL 166
           GLGSL
Sbjct: 150 GLGSL 154

BLAST of Chy6G119050 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 135.6 bits (340), Expect = 3.9e-32
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 102 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 161
           +WRASGIT+ELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL
Sbjct: 144 IWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLL 203

Query: 162 GLGSL 167
           GLGSL
Sbjct: 204 GLGSL 208

BLAST of Chy6G119050 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 29/68 (42.65%), Postives = 39/68 (57.35%), Query Frame = 0

Query: 100 YCMWRASGITNELQLYCTAIGALVFAALMLFAGWFHYH-KAAPKLAWFQDVESMLNHHLA 159
           Y  W   G+     LY  A+  L  +AL L  GW H   K  P+++WF++ ES LNHHL+
Sbjct: 121 YQWWYTIGLRTNEDLYTGALFLLFLSALSLIGGWLHLQPKWKPRVSWFKNAESRLNHHLS 180

Query: 160 GLLGLGSL 167
           GL G+ SL
Sbjct: 181 GLFGVSSL 188

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q2QD895.0e-32100.00Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psa... [more]
Q0ZJ205.0e-32100.00Photosystem I P700 chlorophyll a apoprotein A1 OS=Vitis vinifera OX=29760 GN=psa... [more]
Q7YJX21.1e-3198.46Photosystem I P700 chlorophyll a apoprotein A1 OS=Calycanthus floridus var. glau... [more]
Q09X171.5e-3198.46Photosystem I P700 chlorophyll a apoprotein A1 OS=Morus indica OX=248361 GN=psaA... [more]
A0A3351.9e-3196.92Photosystem I P700 chlorophyll a apoprotein A1 OS=Coffea arabica OX=13443 GN=psa... [more]
Match NameE-valueIdentityDescription
A0A218KG561.8e-29100.00Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus var. hardwicki... [more]
A0A292G3741.8e-29100.00Photosystem I P700 chlorophyll a apoprotein A1 OS=Vitis x champinii OX=884146 GN... [more]
A0A5J6WDA01.8e-29100.00Photosystem I P700 chlorophyll a apoprotein A1 OS=Vitis hancockii OX=1046262 GN=... [more]
A0A1X9Q1T91.8e-29100.00Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psa... [more]
A0A1C9U8121.8e-29100.00Photosystem I P700 chlorophyll a apoprotein A1 OS=Vitis amurensis OX=103351 GN=p... [more]
Match NameE-valueIdentityDescription
WP_203544736.11.06e-3796.92hypothetical protein, partial [Desulfovibrio sp. JC022] >NDV25020.1 photosystem ... [more]
AOW69021.13.85e-3796.92orf113b [Brassica oleracea var. capitata][more]
RYR38811.14.06e-3796.92hypothetical protein Ahy_A09g044022 [Arachis hypogaea][more]
PNT44002.15.12e-3798.46hypothetical protein POPTR_003G065200, partial [Populus trichocarpa][more]
AGY62833.15.46e-3796.92orf167 [Eruca vesicaria subsp. sativa][more]
Match NameE-valueIdentityDescription
ATCG00350.13.9e-3296.92Photosystem I, PsaA/PsaB protein [more]
ATCG00340.11.2e-0942.65Photosystem I, PsaA/PsaB protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001280Photosystem I PsaA/PsaBPRINTSPR00257PHOTSYSPSAABcoord: 114..138
score: 63.41
coord: 153..175
score: 46.15
IPR001280Photosystem I PsaA/PsaBPFAMPF00223PsaA_PsaBcoord: 100..167
e-value: 8.1E-29
score: 100.4
IPR036408Photosystem I PsaA/PsaB superfamilyGENE3D1.20.1130.10Photosystem I PsaA/PsaBcoord: 97..169
e-value: 6.4E-28
score: 98.9
IPR036408Photosystem I PsaA/PsaB superfamilySUPERFAMILY81558Photosystem I subunits PsaA/PsaBcoord: 98..166
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..46
NoneNo IPR availablePANTHERPTHR30128OUTER MEMBRANE PROTEIN, OMPA-RELATEDcoord: 100..166
IPR006243Photosystem I PsaAPANTHERPTHR30128:SF60PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1coord: 100..166

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy6G119050.1Chy6G119050.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009579 thylakoid
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016491 oxidoreductase activity