Chy6G117720 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G117720
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	DUF4283 domain-containing protein
Location	chrH06: 11406619 .. 11406825 (-)
RNA-Seq Expression	Chy6G117720
Synteny	Chy6G117720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACTATTAAGGAAAAAGAAAACCGAAATGACTTTACTCTTGTTGCTGGGAAGAAAAGAGAGTTGGTGTCTGTCCGAGATAAGGGCAAAAGTATGGAGGTGACTATGCCTAACTCCTTTGGTACCCTTATGGAGTTAGGTGAAGGAAACAAGTGGGGCATTATCTATAGTGGATGGCTGTCCTCCACCCCTACAGGTGGATGA

mRNA sequence

ATGACGACTATTAAGGAAAAAGAAAACCGAAATGACTTTACTCTTGTTGCTGGGAAGAAAAGAGAGTTGGTGTCTGTCCGAGATAAGGGCAAAAGTATGGAGGTGACTATGCCTAACTCCTTTGGTACCCTTATGGAGTTAGGTGAAGGAAACAAGTGGGGCATTATCTATAGTGGATGGCTGTCCTCCACCCCTACAGGTGGATGA

Coding sequence (CDS)

ATGACGACTATTAAGGAAAAAGAAAACCGAAATGACTTTACTCTTGTTGCTGGGAAGAAAAGAGAGTTGGTGTCTGTCCGAGATAAGGGCAAAAGTATGGAGGTGACTATGCCTAACTCCTTTGGTACCCTTATGGAGTTAGGTGAAGGAAACAAGTGGGGCATTATCTATAGTGGATGGCTGTCCTCCACCCCTACAGGTGGATGA

Protein sequence

MTTIKEKENRNDFTLVAGKKRELVSVRDKGKSMEVTMPNSFGTLMELGEGNKWGIIYSGWLSSTPTGG*

Homology

[Close]

BLAST of Chy6G117720 vs. ExPASy TrEMBL
Match: A0A5A7TKU4 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00080 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.4e-10
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 5   KEKENRNDFTLVAGKKRELVSVRDKGKSMEVTMPNSFGTLMELGEGNKWGI 56
           KE   R++FTLV  KKRELVSVRD+GKS+EVTMP+SFG+L+E+G+ +KW +
Sbjct: 101 KEVGQRDEFTLVTRKKRELVSVRDRGKSLEVTMPDSFGSLLEVGDADKWAL 151

[Close]

BLAST of Chy6G117720 vs. ExPASy TrEMBL
Match: A0A5A7TVB8 (Putative non-LTR retroelement reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00750 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.3e-10
Identity = 32/51 (62.75%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 5   KEKENRNDFTLVAGKKRELVSVRDKGKSMEVTMPNSFGTLMELGEGNKWGI 56
           KE + R++FTLV  KKRELVS+RD+GKS+EVTMPNSFG+L ++G+ +KW +
Sbjct: 212 KEVDKRDEFTLVTRKKRELVSIRDRGKSLEVTMPNSFGSLFKVGDVDKWAL 262

[Close]

BLAST of Chy6G117720 vs. ExPASy TrEMBL
Match: A0A5D3DIK9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00040 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.3e-10
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 5   KEKENRNDFTLVAGKKRELVSVRDKGKSMEVTMPNSFGTLMELGEGNKWGI 56
           KE    ++FTLV  KKRELVSVRD+GKS+EVTMPNSFG+L+E+G+ NKW +
Sbjct: 393 KEVGKLDEFTLVTRKKRELVSVRDRGKSLEVTMPNSFGSLLEVGDINKWAL 443

[Close]

BLAST of Chy6G117720 vs. ExPASy TrEMBL
Match: A0A5A7V084 (Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00100 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 5   KEKENRNDFTLVAGKKRELVSVRDKGKSMEVTMPNSFGTLMELGEGNKWGI-IYSGWLSS 64
           KE   R+DFTLV  KKRELV VRD+GKS+EVTMPN FG+L+E+G+ +KW + I  G LS+
Sbjct: 346 KEVGKRDDFTLVTRKKRELVFVRDRGKSLEVTMPNFFGSLLEVGDFDKWALTIIDGSLSA 405

[Close]

BLAST of Chy6G117720 vs. ExPASy TrEMBL
Match: A0A5D3D821 (DUF4283 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00320 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.1e-09
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 5   KEKENRNDFTLVAGKKRELVSVRDKGKSMEVTMPNSFGTLMELGEGNKWGI 56
           KE   R+DFTLV  KKREL+S+RD+GKS+EVTM NSF +L E+GE +KW +
Sbjct: 75  KEVAKRDDFTLVTRKKRELISIRDRGKSLEVTMRNSFSSLSEVGENDKWAL 125

[Close]

BLAST of Chy6G117720 vs. NCBI nr
Match: XP_004142722.2 (uncharacterized protein LOC101204295 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 7.40e-13
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 9   NRNDFTLVAGKKRELVSVRDKGKSMEVTMPNSFGTLMELGEGNKWGI 55
           N++DFTLV GKK ELV VR KGKS++VTMPNSFG LMELG+G+KW +
Sbjct: 148 NQDDFTLVIGKKWELVYVRYKGKSVDVTMPNSFGNLMELGKGDKWAL 194

[Close]

BLAST of Chy6G117720 vs. NCBI nr
Match: KAA0042317.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK15441.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 9.37e-13
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 5   KEKENRNDFTLVAGKKRELVSVRDKGKSMEVTMPNSFGTLMELGEGNKWGI 55
           KE   R++FTLV  KKRELVSVRD+GKS+EVTMP+SFG+L+E+G+ +KW +
Sbjct: 101 KEVGQRDEFTLVTRKKRELVSVRDRGKSLEVTMPDSFGSLLEVGDADKWAL 151

[Close]

BLAST of Chy6G117720 vs. NCBI nr
Match: TYK23423.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 1.22e-12
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 5   KEKENRNDFTLVAGKKRELVSVRDKGKSMEVTMPNSFGTLMELGEGNKWGI 55
           KE    ++FTLV  KKRELVSVRD+GKS+EVTMPNSFG+L+E+G+ NKW +
Sbjct: 393 KEVGKLDEFTLVTRKKRELVSVRDRGKSLEVTMPNSFGSLLEVGDINKWAL 443

[Close]

BLAST of Chy6G117720 vs. NCBI nr
Match: KAA0047412.1 (putative non-LTR retroelement reverse transcriptase [Cucumis melo var. makuwa] >TYK14087.1 putative non-LTR retroelement reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 1.27e-12
Identity = 32/51 (62.75%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 5   KEKENRNDFTLVAGKKRELVSVRDKGKSMEVTMPNSFGTLMELGEGNKWGI 55
           KE + R++FTLV  KKRELVS+RD+GKS+EVTMPNSFG+L ++G+ +KW +
Sbjct: 212 KEVDKRDEFTLVTRKKRELVSIRDRGKSLEVTMPNSFGSLFKVGDVDKWAL 262

[Close]

BLAST of Chy6G117720 vs. NCBI nr
Match: KAA0041614.1 (DUF4283 domain protein [Cucumis melo var. makuwa] >TYK19643.1 DUF4283 domain protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 1.45e-12
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 5   KEKENRNDFTLVAGKKRELVSVRDKGKSMEVTMPNSFGTLMELGEGNKWGI 55
           KE   R+DFTLV  KKREL+S+RD+GKS+EVTM NSF +L E+GE +KW +
Sbjct: 75  KEVAKRDDFTLVTRKKRELISIRDRGKSLEVTMRNSFSSLSEVGENDKWAL 125

The following BLAST results are available for this feature:

BLAST of Chy6G117720 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G117720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TKU4	6.4e-10	64.71	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5A7TVB8	8.3e-10	62.75	Putative non-LTR retroelement reverse transcriptase OS=Cucumis melo var. makuwa ...	[more]
A0A5D3DIK9	8.3e-10	66.67	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V084	1.1e-09	61.67	Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cuc...	[more]
A0A5D3D821	4.1e-09	62.75	DUF4283 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]

BLAST of Chy6G117720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142722.2	7.40e-13	72.34	uncharacterized protein LOC101204295 [Cucumis sativus]	[more]
KAA0042317.1	9.37e-13	64.71	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]
TYK23423.1	1.22e-12	66.67	DUF4283 domain-containing protein [Cucumis melo var. makuwa]	[more]
KAA0047412.1	1.27e-12	62.75	putative non-LTR retroelement reverse transcriptase [Cucumis melo var. makuwa] >...	[more]
KAA0041614.1	1.45e-12	62.75	DUF4283 domain protein [Cucumis melo var. makuwa] >TYK19643.1 DUF4283 domain pro...	[more]

BLAST of Chy6G117720 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G117720.1	Chy6G117720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity