Chy6G117440 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G117440
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	DUF4283 domain-containing protein
Location	chrH06: 10927078 .. 10927335 (-)
RNA-Seq Expression	Chy6G117440
Synteny	Chy6G117440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAAAATCTTTTGAGTCGATCCTATCCCGTGGACTGTGGCATCTTGATGGCAAACCAATGCTTCTACATAAATGGAGTCCATGTATTATCCTTGAATCTTTTGTTTATTATTATGTTCCTCTATGGATCAAATTTGGTAGAATTCCTATAGAGTTTTGGACAAAATCAGGTTTGACTGTTATTGCTAGTGCTGTAGGAAAGCCTCTGTCTTTAGATTTAGCCACTAAGGAAAGTCGTAGACTTTCATATGCTCGA

mRNA sequence

ATGCTAAAATCTTTTGAGTCGATCCTATCCCGTGGACTGTGGCATCTTGATGGCAAACCAATGCTTCTACATAAATGGAGTCCATGTATTATCCTTGAATCTTTTGTTTATTATTATGTTCCTCTATGGATCAAATTTGGTAGAATTCCTATAGAGTTTTGGACAAAATCAGGTTTGACTGTTATTGCTAGTGCTGTAGGAAAGCCTCTGTCTTTAGATTTAGCCACTAAGGAAAGTCGTAGACTTTCATATGCTCGA

Coding sequence (CDS)

ATGCTAAAATCTTTTGAGTCGATCCTATCCCGTGGACTGTGGCATCTTGATGGCAAACCAATGCTTCTACATAAATGGAGTCCATGTATTATCCTTGAATCTTTTGTTTATTATTATGTTCCTCTATGGATCAAATTTGGTAGAATTCCTATAGAGTTTTGGACAAAATCAGGTTTGACTGTTATTGCTAGTGCTGTAGGAAAGCCTCTGTCTTTAGATTTAGCCACTAAGGAAAGTCGTAGACTTTCATATGCTCGA

Protein sequence

MLKSFESILSRGLWHLDGKPMLLHKWSPCIILESFVYYYVPLWIKFGRIPIEFWTKSGLTVIASAVGKPLSLDLATKESRRLSYAR

Homology

[Close]

BLAST of Chy6G117440 vs. ExPASy TrEMBL
Match: A0A5D3DSG9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003060 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.3e-25
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 3   KSFESILSRGLWHLDGKPMLLHKWSPCIILESFVYYYVPLWIKFGRIPIEFWTKSGLTVI 62
           KS E ILSRG WHL GKPML  KW+P I+ ESFV+  VP+WI  G++P+E WT++GL V+
Sbjct: 240 KSVEWILSRGPWHLGGKPMLFRKWTPAIVPESFVFNSVPVWITLGKLPMELWTEAGLAVV 299

Query: 63  ASAVGKPLSLDLATKESRRLSYAR 87
           A AVGKP+SLDLATKE RRLSYAR
Sbjct: 300 AGAVGKPISLDLATKERRRLSYAR 323

[Close]

BLAST of Chy6G117440 vs. ExPASy TrEMBL
Match: A0A5A7TK34 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00070 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-25
Identity = 56/84 (66.67%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 3   KSFESILSRGLWHLDGKPMLLHKWSPCIILESFVYYYVPLWIKFGRIPIEFWTKSGLTVI 62
           KS E ILSRG WHL GKPMLL KW+P I+ ESF++  +P+WIK GRIPIE W ++GL V+
Sbjct: 253 KSLEWILSRGPWHLGGKPMLLRKWTPGIVPESFMFNSIPVWIKLGRIPIELWIEAGLAVV 312

Query: 63  ASAVGKPLSLDLATKESRRLSYAR 87
           AS VGKP++LDL TKE RR+SYAR
Sbjct: 313 ASTVGKPITLDLVTKEQRRVSYAR 336

[Close]

BLAST of Chy6G117440 vs. ExPASy TrEMBL
Match: A0A5A7V507 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00710 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-25
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 3   KSFESILSRGLWHLDGKPMLLHKWSPCIILESFVYYYVPLWIKFGRIPIEFWTKSGLTVI 62
           KS E ILSRG WHL GKPML  KW+P I+ ESFV+  VP+WI  G++P+E WT++GL V+
Sbjct: 443 KSVEWILSRGPWHLGGKPMLFRKWTPGIVPESFVFNSVPVWITLGKLPMELWTEAGLAVV 502

Query: 63  ASAVGKPLSLDLATKESRRLSYAR 87
           A AVGKP+SLDLATKE RRLSYAR
Sbjct: 503 AGAVGKPISLDLATKERRRLSYAR 526

[Close]

BLAST of Chy6G117440 vs. ExPASy TrEMBL
Match: A0A1S3CC83 (uncharacterized protein LOC103499323 OS=Cucumis melo OX=3656 GN=LOC103499323 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-25
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 3   KSFESILSRGLWHLDGKPMLLHKWSPCIILESFVYYYVPLWIKFGRIPIEFWTKSGLTVI 62
           KS E ILSRG WHL GKPML  KW+P I+ ESFV+  VP+WI  G++P+E WT++GL V+
Sbjct: 324 KSVEWILSRGPWHLGGKPMLFRKWTPGIVPESFVFNSVPVWITLGKLPMELWTEAGLAVV 383

Query: 63  ASAVGKPLSLDLATKESRRLSYAR 87
           A AVGKP+SLDLATKE RRLSYAR
Sbjct: 384 AGAVGKPISLDLATKERRRLSYAR 407

[Close]

BLAST of Chy6G117440 vs. ExPASy TrEMBL
Match: A0A5A7TWG5 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00450 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.7e-25
Identity = 57/84 (67.86%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 3   KSFESILSRGLWHLDGKPMLLHKWSPCIILESFVYYYVPLWIKFGRIPIEFWTKSGLTVI 62
           KS E ILSRG WHLD K MLL KW+P I+ E FV+  VP+WI+ G++P+E WT++GL V+
Sbjct: 386 KSVEWILSRGPWHLDDKSMLLRKWTPGIVPEFFVFNSVPVWIRLGKLPMELWTEAGLAVV 445

Query: 63  ASAVGKPLSLDLATKESRRLSYAR 87
           ASAVGKP+SLDLATKE RRLSYAR
Sbjct: 446 ASAVGKPISLDLATKERRRLSYAR 469

[Close]

BLAST of Chy6G117440 vs. NCBI nr
Match: XP_031740405.1 (uncharacterized protein LOC116403411 [Cucumis sativus])

HSP 1 Score: 128 bits (322), Expect = 3.47e-34
Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 2  LKSFESILSRGLWHLDGKPMLLHKWSPCIILESFVYYYVPLWIKFGRIPIEFWTKSGLTV 61
          LKS + ILSRG WHL GKPMLL KW+P I+ ESFV+  VP+WIK GRIP+E WT +GL V
Sbjct: 13 LKSIQWILSRGPWHLGGKPMLLRKWTPGIVPESFVFDSVPVWIKLGRIPLELWTDAGLAV 72

Query: 62 IASAVGKPLSLDLATKESRRLSYAR 86
          +ASA+GKPL +DLATKE RRLSYAR
Sbjct: 73 VASAIGKPLLVDLATKERRRLSYAR 97

[Close]

BLAST of Chy6G117440 vs. NCBI nr
Match: XP_031745056.1 (uncharacterized protein LOC116405235 [Cucumis sativus])

HSP 1 Score: 127 bits (320), Expect = 6.04e-34
Identity = 60/85 (70.59%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 2   LKSFESILSRGLWHLDGKPMLLHKWSPCIILESFVYYYVPLWIKFGRIPIEFWTKSGLTV 61
           LKS E ILS G WHL GKPMLL KW+P I+ ESFV+  VP+WIK GRIP+E WT +GL V
Sbjct: 90  LKSIEWILSGGPWHLGGKPMLLRKWTPGIVPESFVFNSVPVWIKLGRIPLELWTDAGLAV 149

Query: 62  IASAVGKPLSLDLATKESRRLSYAR 86
           +ASA+GKPLS+DLATKE R LSYAR
Sbjct: 150 VASAIGKPLSVDLATKERRHLSYAR 174

[Close]

BLAST of Chy6G117440 vs. NCBI nr
Match: TYK26656.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (314), Expect = 4.91e-32
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 3   KSFESILSRGLWHLDGKPMLLHKWSPCIILESFVYYYVPLWIKFGRIPIEFWTKSGLTVI 62
           KS E ILSRG WHL GKPML  KW+P I+ ESFV+  VP+WI  G++P+E WT++GL V+
Sbjct: 240 KSVEWILSRGPWHLGGKPMLFRKWTPAIVPESFVFNSVPVWITLGKLPMELWTEAGLAVV 299

Query: 63  ASAVGKPLSLDLATKESRRLSYAR 86
           A AVGKP+SLDLATKE RRLSYAR
Sbjct: 300 AGAVGKPISLDLATKERRRLSYAR 323

[Close]

BLAST of Chy6G117440 vs. NCBI nr
Match: KAA0042316.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa] >TYK15440.1 DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (311), Expect = 2.57e-31
Identity = 56/84 (66.67%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 3   KSFESILSRGLWHLDGKPMLLHKWSPCIILESFVYYYVPLWIKFGRIPIEFWTKSGLTVI 62
           KS E ILSRG WHL GKPMLL KW+P I+ ESF++  +P+WIK GRIPIE W ++GL V+
Sbjct: 253 KSLEWILSRGPWHLGGKPMLLRKWTPGIVPESFMFNSIPVWIKLGRIPIELWIEAGLAVV 312

Query: 63  ASAVGKPLSLDLATKESRRLSYAR 86
           AS VGKP++LDL TKE RR+SYAR
Sbjct: 313 ASTVGKPITLDLVTKEQRRVSYAR 336

[Close]

BLAST of Chy6G117440 vs. NCBI nr
Match: XP_008460524.1 (PREDICTED: uncharacterized protein LOC103499323 [Cucumis melo])

HSP 1 Score: 124 bits (311), Expect = 3.61e-31
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 3   KSFESILSRGLWHLDGKPMLLHKWSPCIILESFVYYYVPLWIKFGRIPIEFWTKSGLTVI 62
           KS E ILSRG WHL GKPML  KW+P I+ ESFV+  VP+WI  G++P+E WT++GL V+
Sbjct: 324 KSVEWILSRGPWHLGGKPMLFRKWTPGIVPESFVFNSVPVWITLGKLPMELWTEAGLAVV 383

Query: 63  ASAVGKPLSLDLATKESRRLSYAR 86
           A AVGKP+SLDLATKE RRLSYAR
Sbjct: 384 AGAVGKPISLDLATKERRRLSYAR 407

[Close]

BLAST of Chy6G117440 vs. TAIR 10
Match: AT5G28823.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: Zinc knuckle (CCHC-type) family protein (TAIR:AT2G07760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 1.7e-04
Identity = 19/60 (31.67%), Postives = 30/60 (50.00%), Query Frame = 0


Query: 11  RGLWHLDGKPMLLHKWSPCIILESFVYYYVPLWIKFGRIPIEFWTKSGLTVIASAVGKPL 70
           R LWH+D   M +  WSP    E      +P W+    IP + ++  G+  IAS +G+ +
Sbjct: 223 RALWHVDDCLMFVSTWSPVANFEVPEITMIPAWLTLKNIPNQLYSFKGIKWIASGIGETM 282

[Close]

BLAST of Chy6G117440 vs. TAIR 10
Match: AT2G01050.1 (zinc ion binding;nucleic acid binding )

HSP 1 Score: 40.8 bits (94), Expect = 6.4e-04
Identity = 21/84 (25.00%), Postives = 40/84 (47.62%), Query Frame = 0


Query: 3   KSFESILSRGLWHLDGKPMLLHKWSPCIILESFVYYYVPLWIKFGRIPIEFWTKSGLTVI 62
           + + + L+ G W + G  +L+  WS             P+W++   IP  ++ +  L  I
Sbjct: 127 EEYMAALTGGPWRVLGNYLLVQDWSSRFDPLRDDIVTTPVWVRLSNIPYNYYHRCLLMEI 186

Query: 63  ASAVGKPLSLDLATKESRRLSYAR 87
           A  +G+PL +D+ T    +  +AR
Sbjct: 187 ARGLGRPLKVDMNTINFDKGRFAR 210

The following BLAST results are available for this feature:

BLAST of Chy6G117440 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G117440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DSG9	1.3e-25	67.86	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TK34	3.0e-25	66.67	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V507	3.0e-25	67.86	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A1S3CC83	3.0e-25	67.86	uncharacterized protein LOC103499323 OS=Cucumis melo OX=3656 GN=LOC103499323 PE=...	[more]
A0A5A7TWG5	6.7e-25	67.86	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Chy6G117440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740405.1	3.47e-34	70.59	uncharacterized protein LOC116403411 [Cucumis sativus]	[more]
XP_031745056.1	6.04e-34	70.59	uncharacterized protein LOC116405235 [Cucumis sativus]	[more]
TYK26656.1	4.91e-32	67.86	DUF4283 domain-containing protein [Cucumis melo var. makuwa]	[more]
KAA0042316.1	2.57e-31	66.67	DUF4283 domain-containing protein [Cucumis melo var. makuwa] >TYK15440.1 DUF4283...	[more]
XP_008460524.1	3.61e-31	67.86	PREDICTED: uncharacterized protein LOC103499323 [Cucumis melo]	[more]

BLAST of Chy6G117440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28823.1	1.7e-04	31.67	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT2G01050.1	6.4e-04	25.00	zinc ion binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 5..86 e-value: 3.0E-21 score: 75.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G117440.1	Chy6G117440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity