Chy6G116660 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G116660
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Ferredoxin
Location	chrH06: 9911798 .. 9913084 (+)
RNA-Seq Expression	Chy6G116660
Synteny	Chy6G116660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGCACCACTGCAATCACCTCCCCATTTCCGGCCACCTCCTTCCTCCGTCGGAATCCTACCGGTGGAGTGAGCCTCAAGCCATTTCCCAACATGGGTGAATCTCTGTTCGGGCTGAAACACCGCGGCGGACGAGTGACGATGAAGGCATACAAGGTGAAACTCATAACCCCAGACGGAGAGAAAACGGTTGAATGTAATGCTGATCTTTACATTTTAGATGCGGCTGAGGAAAGTGGGCTTGATCTTCCTTACTCTTGCAGAGCTGGGGCTTGTTCTTCATGCGTTGGGAAAGTGGTATCAGGGAAATTGGATCAATCTGATCAGAGTTTTCTTGATGATGATCAAGTGGCTGAAGGTTGGGTTTTAACTTGTGTTGCTAGGCCTGAGTCTGATCTTGTAATTGAGACTCACAAGGAGGAGTCCTTTGCTGGTTAAAACAGAGGAACAAGAAGGGATTAAACTTATTTTTTCTTTTATCTTTTCTATCTTTGTTGATGAGAGTAAGCATAATGGACATTGTTTTCTTAGCTTGATGATGATGATGATGATGATGATGATATCTCTCTTTTAAAGTGTTTGTCGAAAATTGTATTGTTCATCACTGGTTTAAGTTTATTTACAACTCGGGTTTTGTTTATCTGTTGTTGGGTTCTTTACTTTCATTTCTTTTGGGCTTCTTTTACTTTCATGTGAATGATACTGTCTTTTAGCTTCACGTATATCTCTTTAGCTCTCCATTGTAAAGCATTTTGTTTTTTGTTTTATTTATATGTTGTTGGGTGGTTGTTATTTATTTCTCTTTGATATCCAAGCCGTGAATGATACTATAGATTAATCTATCTTTATTTTGGGGAATGGTAAAAAATAGTCCATTCTTTAGGGGCCGTGGGGTTTTAGGATTGATGGAATAAAATAAAATTTTAGAACAATGTATGAGTGAAAAGTTCAATTTACCCTCAATGAAATTTCCTTCTCTTTCACCTAAATCACAACAAACTCAATTTCTTCTCCCACTTGTTATCTTCTTCCTCTAACCTCTTTCAATCGTGGAGGACCAATTTCAATTTGATCGTTTAGGGCTCTTTTCTTCTTAAAGGACATTAAGGAAGAAAATATTGCTGACAGAGTAAGATGGTGAGGAGGATTGTGGCTTGGTAAGAGGTCAGAGGAAGAAGGAAAGAAGAATTACAATTTACAAACCTGAGCTCCCAACTTTCAGTTGTAGTTGCTGTTGACCGTCGTAGGGTGTTGAGTCGTGAGGGAGAACCAATGCATGCGTGA

mRNA sequence

ATGAGCAGCACCACTGCAATCACCTCCCCATTTCCGGCCACCTCCTTCCTCCGTCGGAATCCTACCGGTGGAGTGAGCCTCAAGCCATTTCCCAACATGGGTGAATCTCTGTTCGGGCTGAAACACCGCGGCGGACGAGTGACGATGAAGGCATACAAGGTGAAACTCATAACCCCAGACGGAGAGAAAACGGTTGAATGTAATGCTGATCTTTACATTTTAGATGCGGCTGAGGAAAGTGGGCTTGATCTTCCTTACTCTTGCAGAGCTGGGGCTTGTTCTTCATGCGTTGGGAAAGTGGTATCAGGGAAATTGGATCAATCTGATCAGAGTTTTCTTGATGATGATCAAGTGGCTGAAGGTTGGGTTTTAACTTGTGTTGCTAGGCCTGAGTCTGATCTTGTAATTGAGACTCACAAGGAGGAGTCCTTTGCTGTTGTAGTTGCTGTTGACCGTCGTAGGGTGTTGAGTCGTGAGGGAGAACCAATGCATGCGTGA

Coding sequence (CDS)

ATGAGCAGCACCACTGCAATCACCTCCCCATTTCCGGCCACCTCCTTCCTCCGTCGGAATCCTACCGGTGGAGTGAGCCTCAAGCCATTTCCCAACATGGGTGAATCTCTGTTCGGGCTGAAACACCGCGGCGGACGAGTGACGATGAAGGCATACAAGGTGAAACTCATAACCCCAGACGGAGAGAAAACGGTTGAATGTAATGCTGATCTTTACATTTTAGATGCGGCTGAGGAAAGTGGGCTTGATCTTCCTTACTCTTGCAGAGCTGGGGCTTGTTCTTCATGCGTTGGGAAAGTGGTATCAGGGAAATTGGATCAATCTGATCAGAGTTTTCTTGATGATGATCAAGTGGCTGAAGGTTGGGTTTTAACTTGTGTTGCTAGGCCTGAGTCTGATCTTGTAATTGAGACTCACAAGGAGGAGTCCTTTGCTGTTGTAGTTGCTGTTGACCGTCGTAGGGTGTTGAGTCGTGAGGGAGAACCAATGCATGCGTGA

Protein sequence

MSSTTAITSPFPATSFLRRNPTGGVSLKPFPNMGESLFGLKHRGGRVTMKAYKVKLITPDGEKTVECNADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDDQVAEGWVLTCVARPESDLVIETHKEESFAVVVAVDRRRVLSREGEPMHA*

Homology

[Close]

BLAST of Chy6G116660 vs. ExPASy Swiss-Prot
Match: O04090 (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.5e-46
Identity = 99/147 (67.35%), Postives = 120/147 (81.63%), Query Frame = 0


Query: 3   STTAITSPFPATSFLRRNPTGGVSLK--PFPNMGESLFGLKH---RGGRVT-MKAYKVKL 62
           ++TA++S   +TSFLRR  T  +SL+  PF N  +SLFGLK    RGGRVT M  YKVK 
Sbjct: 2   ASTALSSAIVSTSFLRRQQT-PISLRSLPFANT-QSLFGLKSSTARGGRVTAMATYKVKF 61

Query: 63  ITPDGEKTVECNADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDD 122
           ITP+GE+ VEC  D+Y+LDAAEE+GLDLPYSCRAG+CSSC GKVVSG +DQSDQSFLDD+
Sbjct: 62  ITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDE 121

Query: 123 QVAEGWVLTCVARPESDLVIETHKEES 144
           Q++EG+VLTCVA P SD+VIETHKEE+
Sbjct: 122 QMSEGYVLTCVAYPTSDVVIETHKEEA 146

[Close]

BLAST of Chy6G116660 vs. ExPASy Swiss-Prot
Match: P16972 (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD2 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.9e-45
Identity = 93/145 (64.14%), Postives = 115/145 (79.31%), Query Frame = 0


Query: 3   STTAITSPFPATSFLRRNPTGGVSLKPFPNMG-ESLFGLKH---RGGRVT-MKAYKVKLI 62
           ++TA++S    TSF+RR+P   +SL+  P+   +SLFGLK    RGGRVT M  YKVK I
Sbjct: 2   ASTALSSAIVGTSFIRRSP-APISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFI 61

Query: 63  TPDGEKTVECNADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDDQ 122
           TP+GE  VEC+ D+Y+LDAAEE+G+DLPYSCRAG+CSSC GKVVSG +DQSDQSFLDD+Q
Sbjct: 62  TPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQ 121

Query: 123 VAEGWVLTCVARPESDLVIETHKEE 143
           + EG+VLTC A P SD+ IETHKEE
Sbjct: 122 IGEGFVLTCAAYPTSDVTIETHKEE 145

[Close]

BLAST of Chy6G116660 vs. ExPASy Swiss-Prot
Match: Q9ZTS2 (Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.9e-42
Identity = 85/138 (61.59%), Postives = 107/138 (77.54%), Query Frame = 0


Query: 6   AITSPFPATSFLRRNPTGGVSLKPFPNMGESLFGLKH-RGGRVT-MKAYKVKLITPDGEK 65
           ++++   +TSF+ R P    SLKP PN+GE+LFGLK   GG+VT M +YKVKLITPDG  
Sbjct: 3   SVSATMISTSFMPRKP-AVTSLKPIPNVGEALFGLKSANGGKVTCMASYKVKLITPDGPI 62

Query: 66  TVECNADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDDQVAEGWV 125
             +C  ++YILD AEE+G DLPYSCRAG+CSSC GK+  G +DQ+D +FLDDDQ+ EGWV
Sbjct: 63  EFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWV 122

Query: 126 LTCVARPESDLVIETHKE 142
           LTCVA P+SD+ IETHKE
Sbjct: 123 LTCVAYPQSDVTIETHKE 139

[Close]

BLAST of Chy6G116660 vs. ExPASy Swiss-Prot
Match: O04683 (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.0e-39
Identity = 83/144 (57.64%), Postives = 106/144 (73.61%), Query Frame = 0


Query: 2   SSTTAITSPFPATSFLRRNPTGGVSLKPFPNMGESLFGLKHRG--GRVT-MKAYKVKLIT 61
           ++T A++    +T+F  + P    +L    N+G +LFGLK     GRVT M AYKV L+T
Sbjct: 3   ATTAALSGATMSTAFAPKTPPMTAALP--TNVGRALFGLKSSASRGRVTAMAAYKVTLVT 62

Query: 62  PDGEKTVECNADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDDQV 121
           P+G++ +EC  D+YILDAAEE+G+DLPYSCRAG+CSSC GKV SG ++Q D SFLDDDQ+
Sbjct: 63  PEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQI 122

Query: 122 AEGWVLTCVARPESDLVIETHKEE 143
            EGWVLTCVA P  D+ IETHKEE
Sbjct: 123 KEGWVLTCVAYPTGDVTIETHKEE 144

[Close]

BLAST of Chy6G116660 vs. ExPASy Swiss-Prot
Match: Q43517 (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum OX=4081 GN=SEND33 PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.0e-39
Identity = 86/139 (61.87%), Postives = 103/139 (74.10%), Query Frame = 0


Query: 6   AITSPFPATSFLRRNPTGGVSLKPFPNMGESLFGLKH-RGGRVT-MKAYKVKLITPDGEK 65
           +I+    +TSFL R P    SLK   N+GE+LFGLK  R GR+T M +YKVKLITP+G  
Sbjct: 3   SISGTMISTSFLPRKP-AVTSLKAISNVGEALFGLKSGRNGRITCMASYKVKLITPEGPI 62

Query: 66  TVECNADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDDQVAEGWV 125
             EC  D+YILD AEE G DLPYSCRAG+CSSC GKV +G +DQSD +FLD+DQ A G+V
Sbjct: 63  EFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFV 122

Query: 126 LTCVARPESDLVIETHKEE 143
           LTCVA P+ D+ IETHKEE
Sbjct: 123 LTCVAYPKGDVTIETHKEE 140

[Close]

BLAST of Chy6G116660 vs. ExPASy TrEMBL
Match: A0A0A0L764 (Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_3G222800 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.6e-73
Identity = 137/145 (94.48%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MSSTTAITSPFPATSFLRRNPTGGVSLKPFPNMGESLFGLKHRGGRVTMKAYKVKLITPD 60
           MSSTTAITSPFPATSF+RRNPTGGVS KPFPNMGESL+GLKHRGGR+ MKAYKVKLITPD
Sbjct: 1   MSSTTAITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLKHRGGRLAMKAYKVKLITPD 60

Query: 61  GEKTVECNADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDDQVAE 120
           GEKTVEC+ADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDD+QVAE
Sbjct: 61  GEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQVAE 120

Query: 121 GWVLTCVARPESDLVIETHKEESFA 146
           GWVLTCVARPESDLVIETHKE+SFA
Sbjct: 121 GWVLTCVARPESDLVIETHKEDSFA 145

[Close]

BLAST of Chy6G116660 vs. ExPASy TrEMBL
Match: A0A5A7TBH5 (Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00090 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 8.0e-67
Identity = 126/145 (86.90%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 1   MSSTTAITSPFPATSFLRRNPTGGVSLKPFPNMGESLFGLKHRGGRVTMKAYKVKLITPD 60
           M STTA TSPFPATSFLRRNPTGGVSLKPFPNMGESLFGLKHRGGRVT  AY VKLITP+
Sbjct: 1   MGSTTAFTSPFPATSFLRRNPTGGVSLKPFPNMGESLFGLKHRGGRVTAMAYNVKLITPE 60

Query: 61  GEKTVECNADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDDQVAE 120
           GEK++ C  D YILDAAEE+G+DLPYSCRAGACSSC+GKVVSGKLDQSDQSFLDDDQVAE
Sbjct: 61  GEKSITCPDDAYILDAAEENGIDLPYSCRAGACSSCIGKVVSGKLDQSDQSFLDDDQVAE 120

Query: 121 GWVLTCVARPESDLVIETHKEESFA 146
           GWVLTCVAR ESD+VIETHKE+ FA
Sbjct: 121 GWVLTCVARAESDVVIETHKEDVFA 145

[Close]

BLAST of Chy6G116660 vs. ExPASy TrEMBL
Match: A0A1S3C1X0 (Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496100 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 8.0e-67
Identity = 126/145 (86.90%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 1   MSSTTAITSPFPATSFLRRNPTGGVSLKPFPNMGESLFGLKHRGGRVTMKAYKVKLITPD 60
           M STTA TSPFPATSFLRRNPTGGVSLKPFPNMGESLFGLKHRGGRVT  AY VKLITP+
Sbjct: 1   MGSTTAFTSPFPATSFLRRNPTGGVSLKPFPNMGESLFGLKHRGGRVTAMAYNVKLITPE 60

Query: 61  GEKTVECNADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDDQVAE 120
           GEK++ C  D YILDAAEE+G+DLPYSCRAGACSSC+GKVVSGKLDQSDQSFLDDDQVAE
Sbjct: 61  GEKSITCPDDAYILDAAEENGIDLPYSCRAGACSSCIGKVVSGKLDQSDQSFLDDDQVAE 120

Query: 121 GWVLTCVARPESDLVIETHKEESFA 146
           GWVLTCVAR ESD+VIETHKE+ FA
Sbjct: 121 GWVLTCVARAESDVVIETHKEDVFA 145

[Close]

BLAST of Chy6G116660 vs. ExPASy TrEMBL
Match: A0A6J1J1D5 (Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111481826 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.8e-56
Identity = 111/149 (74.50%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 1   MSSTTAITSPFPATSFLRR-NPTGGVSLKPFPNMGESLFGLK---HRGGRVTMKAYKVKL 60
           M STTA+T+P P TSFLRR  P  GVSL+PFPN+G+SLFGLK    RGG +T+ AYKVKL
Sbjct: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60

Query: 61  ITPDGEKTVECNADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDD 120
           ITP+GEK +EC+ D YILDAAEESG+DLPYSCRAGACSSC+GK+ SGK+DQSD SFLDD 
Sbjct: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120

Query: 121 QVAEGWVLTCVARPESDLVIETHKEESFA 146
           Q+ +GWVLTCVARPESD+VIETHKEE FA
Sbjct: 121 QMEDGWVLTCVARPESDIVIETHKEEVFA 149

[Close]

BLAST of Chy6G116660 vs. ExPASy TrEMBL
Match: A0A6J1FPZ2 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111447172 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.8e-56
Identity = 111/149 (74.50%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 1   MSSTTAITSPFPATSFLRR-NPTGGVSLKPFPNMGESLFGLK---HRGGRVTMKAYKVKL 60
           M STTA+T+P P TSFLRR  P  GVSL+PFPN+G+SLFGLK    RGG +T+ AYKVKL
Sbjct: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60

Query: 61  ITPDGEKTVECNADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDD 120
           ITP+GEK +EC+ D YILDAAEESG+DLPYSCRAGACSSC+GK+ SGK+DQSD SFLDD 
Sbjct: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120

Query: 121 QVAEGWVLTCVARPESDLVIETHKEESFA 146
           Q+ +GWVLTCVARPESD+VIETHKEE FA
Sbjct: 121 QMEDGWVLTCVARPESDIVIETHKEEVFA 149

[Close]

BLAST of Chy6G116660 vs. NCBI nr
Match: XP_004146259.1 (ferredoxin, leaf L-A [Cucumis sativus] >KGN57598.1 hypothetical protein Csa_011051 [Cucumis sativus])

HSP 1 Score: 283 bits (724), Expect = 1.11e-95
Identity = 137/145 (94.48%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MSSTTAITSPFPATSFLRRNPTGGVSLKPFPNMGESLFGLKHRGGRVTMKAYKVKLITPD 60
           MSSTTAITSPFPATSF+RRNPTGGVS KPFPNMGESL+GLKHRGGR+ MKAYKVKLITPD
Sbjct: 1   MSSTTAITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLKHRGGRLAMKAYKVKLITPD 60

Query: 61  GEKTVECNADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDDQVAE 120
           GEKTVEC+ADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDD+QVAE
Sbjct: 61  GEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQVAE 120

Query: 121 GWVLTCVARPESDLVIETHKEESFA 145
           GWVLTCVARPESDLVIETHKE+SFA
Sbjct: 121 GWVLTCVARPESDLVIETHKEDSFA 145

[Close]

BLAST of Chy6G116660 vs. NCBI nr
Match: XP_008456052.1 (PREDICTED: ferredoxin-like [Cucumis melo] >KAA0038971.1 ferredoxin-like [Cucumis melo var. makuwa] >TYK11176.1 ferredoxin-like [Cucumis melo var. makuwa])

HSP 1 Score: 261 bits (668), Expect = 3.81e-87
Identity = 126/145 (86.90%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 1   MSSTTAITSPFPATSFLRRNPTGGVSLKPFPNMGESLFGLKHRGGRVTMKAYKVKLITPD 60
           M STTA TSPFPATSFLRRNPTGGVSLKPFPNMGESLFGLKHRGGRVT  AY VKLITP+
Sbjct: 1   MGSTTAFTSPFPATSFLRRNPTGGVSLKPFPNMGESLFGLKHRGGRVTAMAYNVKLITPE 60

Query: 61  GEKTVECNADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDDQVAE 120
           GEK++ C  D YILDAAEE+G+DLPYSCRAGACSSC+GKVVSGKLDQSDQSFLDDDQVAE
Sbjct: 61  GEKSITCPDDAYILDAAEENGIDLPYSCRAGACSSCIGKVVSGKLDQSDQSFLDDDQVAE 120

Query: 121 GWVLTCVARPESDLVIETHKEESFA 145
           GWVLTCVAR ESD+VIETHKE+ FA
Sbjct: 121 GWVLTCVARAESDVVIETHKEDVFA 145

[Close]

BLAST of Chy6G116660 vs. NCBI nr
Match: XP_038905955.1 (ferredoxin-like [Benincasa hispida])

HSP 1 Score: 247 bits (631), Expect = 1.83e-81
Identity = 119/148 (80.41%), Postives = 132/148 (89.19%), Query Frame = 0


Query: 1   MSSTTAITSPFPATSFLRRNPTGGVSLKPFPNMGESLFGLKH---RGGRVTMKAYKVKLI 60
           M STTA T+PFPA SFLRRNP GGVSLKPFPN+G+SLFGLKH   RGGRVT  AY + LI
Sbjct: 1   MGSTTAFTAPFPAASFLRRNPAGGVSLKPFPNVGQSLFGLKHGSSRGGRVTAMAYNITLI 60

Query: 61  TPDGEKTVECNADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDDQ 120
           TP+GEK++ C +D+YILDAAEE+GLDLPYSCRAGACSSCVGKVVSG LDQSD SFLDDDQ
Sbjct: 61  TPEGEKSITCTSDVYILDAAEEAGLDLPYSCRAGACSSCVGKVVSGTLDQSDNSFLDDDQ 120

Query: 121 VAEGWVLTCVARPESDLVIETHKEESFA 145
           +A+GWVLTCVARPESDLVIETHKE+ FA
Sbjct: 121 MAQGWVLTCVARPESDLVIETHKEDVFA 148

[Close]

BLAST of Chy6G116660 vs. NCBI nr
Match: XP_022941964.1 (ferredoxin-like [Cucurbita moschata] >XP_022983176.1 ferredoxin-like [Cucurbita maxima] >XP_023547581.1 ferredoxin-like [Cucurbita pepo subsp. pepo] >KAG6600367.1 Ferredoxin-2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031026.1 Ferredoxin-2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226 bits (577), Expect = 3.41e-73
Identity = 111/149 (74.50%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 1   MSSTTAITSPFPATSFLRRN-PTGGVSLKPFPNMGESLFGLK---HRGGRVTMKAYKVKL 60
           M STTA+T+P P TSFLRR  P  GVSL+PFPN+G+SLFGLK    RGG +T+ AYKVKL
Sbjct: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60

Query: 61  ITPDGEKTVECNADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDD 120
           ITP+GEK +EC+ D YILDAAEESG+DLPYSCRAGACSSC+GK+ SGK+DQSD SFLDD 
Sbjct: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120

Query: 121 QVAEGWVLTCVARPESDLVIETHKEESFA 145
           Q+ +GWVLTCVARPESD+VIETHKEE FA
Sbjct: 121 QMEDGWVLTCVARPESDIVIETHKEEVFA 149

[Close]

BLAST of Chy6G116660 vs. NCBI nr
Match: XP_022136604.1 (ferredoxin-like [Momordica charantia])

HSP 1 Score: 217 bits (553), Expect = 1.26e-69
Identity = 109/147 (74.15%), Postives = 121/147 (82.31%), Query Frame = 0


Query: 1   MSSTTAITSPFPATSFLRRNPTGGVSLKPFPNMGESLFGLK--HRGGRVTMKAYKVKLIT 60
           M STTA++ P PATSFLR  P  G  L+PFPNMG+ +FGLK   RGGRV   AYKV LIT
Sbjct: 1   MGSTTALSGPIPATSFLRGQPAAG--LRPFPNMGQGVFGLKGGSRGGRVRAMAYKVTLIT 60

Query: 61  PDGEKTVECNADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDDQV 120
           P GEK+V+C  D YILDAAEE GLDLPYSCRAGACSSCVGKVVSGK+DQSD SFLDDDQ+
Sbjct: 61  PSGEKSVKCPPDSYILDAAEEDGLDLPYSCRAGACSSCVGKVVSGKVDQSDNSFLDDDQM 120

Query: 121 AEGWVLTCVARPESDLVIETHKEESFA 145
           AEGWVLTCVA P+SD+VIETHKE  F+
Sbjct: 121 AEGWVLTCVAYPQSDVVIETHKEGEFS 145

[Close]

BLAST of Chy6G116660 vs. TAIR 10
Match: AT1G10960.1 (ferredoxin 1 )

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-47
Identity = 99/147 (67.35%), Postives = 120/147 (81.63%), Query Frame = 0


Query: 3   STTAITSPFPATSFLRRNPTGGVSLK--PFPNMGESLFGLKH---RGGRVT-MKAYKVKL 62
           ++TA++S   +TSFLRR  T  +SL+  PF N  +SLFGLK    RGGRVT M  YKVK 
Sbjct: 2   ASTALSSAIVSTSFLRRQQT-PISLRSLPFANT-QSLFGLKSSTARGGRVTAMATYKVKF 61

Query: 63  ITPDGEKTVECNADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDD 122
           ITP+GE+ VEC  D+Y+LDAAEE+GLDLPYSCRAG+CSSC GKVVSG +DQSDQSFLDD+
Sbjct: 62  ITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDE 121

Query: 123 QVAEGWVLTCVARPESDLVIETHKEES 144
           Q++EG+VLTCVA P SD+VIETHKEE+
Sbjct: 122 QMSEGYVLTCVAYPTSDVVIETHKEEA 146

[Close]

BLAST of Chy6G116660 vs. TAIR 10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 182.2 bits (461), Expect = 3.4e-46
Identity = 93/145 (64.14%), Postives = 115/145 (79.31%), Query Frame = 0


Query: 3   STTAITSPFPATSFLRRNPTGGVSLKPFPNMG-ESLFGLKH---RGGRVT-MKAYKVKLI 62
           ++TA++S    TSF+RR+P   +SL+  P+   +SLFGLK    RGGRVT M  YKVK I
Sbjct: 2   ASTALSSAIVGTSFIRRSP-APISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFI 61

Query: 63  TPDGEKTVECNADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDDQ 122
           TP+GE  VEC+ D+Y+LDAAEE+G+DLPYSCRAG+CSSC GKVVSG +DQSDQSFLDD+Q
Sbjct: 62  TPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQ 121

Query: 123 VAEGWVLTCVARPESDLVIETHKEE 143
           + EG+VLTC A P SD+ IETHKEE
Sbjct: 122 IGEGFVLTCAAYPTSDVTIETHKEE 145

[Close]

BLAST of Chy6G116660 vs. TAIR 10
Match: AT2G27510.1 (ferredoxin 3 )

HSP 1 Score: 134.4 bits (337), Expect = 8.2e-32
Identity = 67/108 (62.04%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 38  FGLK---HRGGRVTMKAYKVKLITPDG-EKTVECNADLYILDAAEESGLDLPYSCRAGAC 97
           FGLK   + GG      YKVKL+ PDG E   E   D YILDAAEE+G+DLPYSCRAGAC
Sbjct: 44  FGLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGAC 103

Query: 98  SSCVGKVVSGKLDQSDQSFLDDDQVAEGWVLTCVARPESDLVIETHKE 142
           S+C G++VSG +DQSD SFL+D  + +G+VLTCVA P+SD VI THKE
Sbjct: 104 STCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKE 151

[Close]

BLAST of Chy6G116660 vs. TAIR 10
Match: AT5G10000.1 (ferredoxin 4 )

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-25
Identity = 58/109 (53.21%), Postives = 82/109 (75.23%), Query Frame = 0


Query: 38  FGL-KHRG--GRVTMK-AYKVKLITPDG-EKTVECNADLYILDAAEESGLDLPYSCRAGA 97
           FGL   RG  G+V  K + KVKLI+P+G E+ +E N D  IL++AE +GL+LPYSCR+G 
Sbjct: 36  FGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGT 95

Query: 98  CSSCVGKVVSGKLDQSDQSFLDDDQVAEGWVLTCVARPESDLVIETHKE 142
           C +C GK+VSGK+DQS  SFL+++Q+ +G++LTC+A P  D V+ THK+
Sbjct: 96  CGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQ 144

[Close]

BLAST of Chy6G116660 vs. TAIR 10
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-14
Identity = 52/142 (36.62%), Postives = 73/142 (51.41%), Query Frame = 0


Query: 2   SSTTAITSPFPATSFLRRNPTGGVSLKPFPNMGESLFGLKHRGGRVTMKAYKVKLITPDG 61
           +ST ++  P+ + SF    P    +L    N    L       GR+  +AYKV ++  DG
Sbjct: 10  TSTISLPKPYLSNSF--SFPLRNATLSTTTNRRNFL-----TTGRIIARAYKV-VVEHDG 69

Query: 62  EKT-VECNADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDDQVAE 121
           + T +E   D  IL  A +SGLD+PY C  G C +C  K+V+G +DQS    L DD V  
Sbjct: 70  KTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQSG-GMLSDDVVER 129

Query: 122 GWVLTCVARPESDLVIETHKEE 143
           G+ L C + P SD  I+   EE
Sbjct: 130 GYTLLCASYPTSDCHIKMIPEE 142

The following BLAST results are available for this feature:

BLAST of Chy6G116660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04090	1.5e-46	67.35	Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1	[more]
P16972	4.9e-45	64.14	Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD2 PE=1 SV=1	[more]
Q9ZTS2	2.9e-42	61.59	Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1	[more]
O04683	1.0e-39	57.64	Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1	[more]
Q43517	1.0e-39	61.87	Ferredoxin-1, chloroplastic OS=Solanum lycopersicum OX=4081 GN=SEND33 PE=2 SV=1	[more]

BLAST of Chy6G116660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L764	2.6e-73	94.48	Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_3G222800 PE=3 SV=1	[more]
A0A5A7TBH5	8.0e-67	86.90	Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00090 PE=...	[more]
A0A1S3C1X0	8.0e-67	86.90	Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496100 PE=3 SV=1	[more]
A0A6J1J1D5	2.8e-56	74.50	Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111481826 PE=3 SV=1	[more]
A0A6J1FPZ2	2.8e-56	74.50	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111447172 PE=3 SV=1	[more]

BLAST of Chy6G116660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146259.1	1.11e-95	94.48	ferredoxin, leaf L-A [Cucumis sativus] >KGN57598.1 hypothetical protein Csa_0110...	[more]
XP_008456052.1	3.81e-87	86.90	PREDICTED: ferredoxin-like [Cucumis melo] >KAA0038971.1 ferredoxin-like [Cucumis...	[more]
XP_038905955.1	1.83e-81	80.41	ferredoxin-like [Benincasa hispida]	[more]
XP_022941964.1	3.41e-73	74.50	ferredoxin-like [Cucurbita moschata] >XP_022983176.1 ferredoxin-like [Cucurbita ...	[more]
XP_022136604.1	1.26e-69	74.15	ferredoxin-like [Momordica charantia]	[more]

BLAST of Chy6G116660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10960.1	1.1e-47	67.35	ferredoxin 1	[more]
AT1G60950.1	3.4e-46	64.14	2Fe-2S ferredoxin-like superfamily protein	[more]
AT2G27510.1	8.2e-32	62.04	ferredoxin 3	[more]
AT5G10000.1	2.6e-25	53.21	ferredoxin 4	[more]
AT4G14890.1	2.0e-14	36.62	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 51..143 e-value: 7.4E-47 score: 155.1
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 58..130 e-value: 7.8E-20 score: 70.6
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 52..142 score: 13.477091
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 54..137 e-value: 4.03184E-35 score: 115.955
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 49..152 e-value: 5.1E-38 score: 130.8
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 4..143
None	No IPR available	PANTHER	PTHR43112:SF17	FERREDOXIN-1, CHLOROPLASTIC	coord: 4..143
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 88..96
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 48..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G116660.1	Chy6G116660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding