Chy6G114610 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G114610
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH06: 6850599 .. 6851818 (-)
RNA-Seq Expression	Chy6G114610
Synteny	Chy6G114610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCGCATGTGCAATTCACCCAAACCGGGCCGCTTTGGACTAATGAGAAGCACATGCACTTCTTGAATTCCGTGGAAGCTTCTTTCGTCCGATCAATGTTCCAAAATCGCGCCCATCGTCGCCGTCTACGGCTGGACCGCCTCTTGCCGGACACCGCTGACTCAACCCTAGATTCCCCTCATAACCACACCAAAAACCATCCCACCTCCGGTCAGTTTAATCTTACATTTTTTTAAAAAAATTTTAATTAAAAAAAACCCTTTATTTATTTATTTATTTATGTATTTATTTATTATTGTTATTATTTTGACTAAAAAGGACCGACCAAACAACGTCTATCAAATAAGATAAAGGAAAAAAAAAGTGAGAATAGTGAATATTCCTTAGGAAGATATTTATGTATGATTTAGATATCACAAAAAAGAAAAATTAAAATAAATAAATAAATCACTTTCCTCTAACTCCAAAAAGATCATTAATATTCTTTGCTTGCATTTTCCTTTATCTTTTCTTTTTTTTTTGTTATTTATTATTTTAATTTATTTTGGGTTTGATCCAGGAAGTGCAAGAATCAACGGTAGATCTACCAGGAGATCTAGGAGGATATCATCTCCACCGTACACTTCAACTCAAGATCAGGCTAGTGCAGAAACTATATACTATAAATTTAAACATTACATTTCTTTCTGGCTTTCTTTCTTTCTTTTATCTCTACTAATAATAGAAATGACCTATTTGTTTTTGTCTTTATCTCCTTCTTTTTCCATCGAAATAATTAAGCTGCTTTTTTTTTTTTGCGGCTGGTGTGGGTATTTTCGAAATGCCACGTGGATATACATTCTAAAATTATGAAAAAAGTGATCATATCCGTAATTAAGCATATAGCTTTTGTGCTCCCACATCTAATTGGCTAAACTCTAATTATATTTTGTTTTTGCTTCATTTAAATAATAGTAATAAAATTGATAATAAAAAAGAGAAGAGAAGAAACTAAAAATATCTGGTTCAATTATTAACACAAAGCTGAGGAATGATGGTTATCTTGTAAAATACACAAAAAGAAGTTATAAAAAATGGTATTAATTAATGAATGAATTAGAATTGAAATAAAAATGTGGAATGGTTCTGTGTGAAATGACAGGTGGTCCCACAGATGGAAAAGAGAGCAGATGAGGATGAAGATGAGAGAGACCATCCCATGTCACCTCTCAACTAG

mRNA sequence

ATGGAATCGCATGTGCAATTCACCCAAACCGGGCCGCTTTGGACTAATGAGAAGCACATGCACTTCTTGAATTCCGTGGAAGCTTCTTTCGTCCGATCAATGTTCCAAAATCGCGCCCATCGTCGCCGTCTACGGCTGGACCGCCTCTTGCCGGACACCGCTGACTCAACCCTAGATTCCCCTCATAACCACACCAAAAACCATCCCACCTCCGGAAGTGCAAGAATCAACGGTAGATCTACCAGGAGATCTAGGAGGATATCATCTCCACCGTACACTTCAACTCAAGATCAGGTGGTCCCACAGATGGAAAAGAGAGCAGATGAGGATGAAGATGAGAGAGACCATCCCATGTCACCTCTCAACTAG

Coding sequence (CDS)

ATGGAATCGCATGTGCAATTCACCCAAACCGGGCCGCTTTGGACTAATGAGAAGCACATGCACTTCTTGAATTCCGTGGAAGCTTCTTTCGTCCGATCAATGTTCCAAAATCGCGCCCATCGTCGCCGTCTACGGCTGGACCGCCTCTTGCCGGACACCGCTGACTCAACCCTAGATTCCCCTCATAACCACACCAAAAACCATCCCACCTCCGGAAGTGCAAGAATCAACGGTAGATCTACCAGGAGATCTAGGAGGATATCATCTCCACCGTACACTTCAACTCAAGATCAGGTGGTCCCACAGATGGAAAAGAGAGCAGATGAGGATGAAGATGAGAGAGACCATCCCATGTCACCTCTCAACTAG

Protein sequence

MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDSPHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRADEDEDERDHPMSPLN*

Homology

[Close]

BLAST of Chy6G114610 vs. ExPASy TrEMBL
Match: A0A0A0L5V0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181960 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.0e-60
Identity = 120/122 (98.36%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS 60
           MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRR LRLDRLLPDTADSTLDS
Sbjct: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDS 60

Query: 61  PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRADEDEDERDHPMSP 120
           PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRA EDEDERDHPMSP
Sbjct: 61  PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPMSP 120

Query: 121 LN 123
           LN
Sbjct: 121 LN 122

[Close]

BLAST of Chy6G114610 vs. ExPASy TrEMBL
Match: A0A1S3AYV4 (uncharacterized protein LOC103484063 OS=Cucumis melo OX=3656 GN=LOC103484063 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.7e-56
Identity = 114/122 (93.44%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS 60
           MESHVQFTQTGP WTNEKHMHFLNS+EASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS
Sbjct: 1   MESHVQFTQTGPSWTNEKHMHFLNSMEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS 60

Query: 61  PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRADEDEDERDHPMSP 120
           P NHTKNHPTSGSAR+NGRSTRRSRR SSPPY+STQDQVVPQMEK A EDEDERDHPMSP
Sbjct: 61  PLNHTKNHPTSGSARMNGRSTRRSRRTSSPPYSSTQDQVVPQMEKIAVEDEDERDHPMSP 120

Query: 121 LN 123
           LN
Sbjct: 121 LN 122

[Close]

BLAST of Chy6G114610 vs. ExPASy TrEMBL
Match: A0A6J1CHV7 (uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011640 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.0e-43
Identity = 96/123 (78.05%), Postives = 105/123 (85.37%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAH-RRRLRLDRLLPDTADSTLD 60
           MESHVQF +TG  WTNEKHMHFLNS+EASFVRSMF+NR H RRRLRLDR LPDT+DSTLD
Sbjct: 27  MESHVQFNETGSCWTNEKHMHFLNSMEASFVRSMFENRTHRRRRLRLDRHLPDTSDSTLD 86

Query: 61  SPHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRADEDEDERDHPMS 120
           SP    KNH TSG+A I+GRS+ RSR  SS P+TS QDQVVPQMEKRA EDEDERDHPMS
Sbjct: 87  SPQKDRKNHATSGAATIDGRSSSRSRTRSSLPHTSNQDQVVPQMEKRAVEDEDERDHPMS 146

Query: 121 PLN 123
           P+N
Sbjct: 147 PIN 149

[Close]

BLAST of Chy6G114610 vs. ExPASy TrEMBL
Match: A0A6J1JBA6 (uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.0e-42
Identity = 92/122 (75.41%), Postives = 104/122 (85.25%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS 60
           MESHVQF++T P WTNEKHMHFLNS+EASFVRSMF+NR HRRRLRLDR L DTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRADEDEDERDHPMSP 120
           P  + K H  S   R++GRS+RRSRRI S P+TS QDQVVPQME+RA EDEDERDHP+SP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP 120

Query: 121 LN 123
           +N
Sbjct: 121 VN 122

[Close]

BLAST of Chy6G114610 vs. ExPASy TrEMBL
Match: A0A6J1J606 (uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 5.0e-42
Identity = 93/122 (76.23%), Postives = 106/122 (86.89%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS 60
           MESHVQF++T P WTNEKHMHFLNS+EASFVRSMF+NR HRRRLRLDR L DTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRADEDEDERDHPMSP 120
           P  + K H  SG+ R++GRS+RRSRRI S P+TS QDQVVPQME+RA EDEDERDHP+SP
Sbjct: 61  PQKNRKKHSISGT-RMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP 120

Query: 121 LN 123
           +N
Sbjct: 121 VN 121

[Close]

BLAST of Chy6G114610 vs. NCBI nr
Match: XP_004140781.1 (uncharacterized protein LOC101217506 [Cucumis sativus] >KGN57360.1 hypothetical protein Csa_009764 [Cucumis sativus])

HSP 1 Score: 239 bits (609), Expect = 2.96e-79
Identity = 120/122 (98.36%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS 60
           MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRR LRLDRLLPDTADSTLDS
Sbjct: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDS 60

Query: 61  PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRADEDEDERDHPMSP 120
           PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRA EDEDERDHPMSP
Sbjct: 61  PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPMSP 120

Query: 121 LN 122
           LN
Sbjct: 121 LN 122

[Close]

BLAST of Chy6G114610 vs. NCBI nr
Match: XP_008439192.1 (PREDICTED: uncharacterized protein LOC103484063 [Cucumis melo])

HSP 1 Score: 226 bits (576), Expect = 3.20e-74
Identity = 114/122 (93.44%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS 60
           MESHVQFTQTGP WTNEKHMHFLNS+EASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS
Sbjct: 1   MESHVQFTQTGPSWTNEKHMHFLNSMEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS 60

Query: 61  PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRADEDEDERDHPMSP 120
           P NHTKNHPTSGSAR+NGRSTRRSRR SSPPY+STQDQVVPQMEK A EDEDERDHPMSP
Sbjct: 61  PLNHTKNHPTSGSARMNGRSTRRSRRTSSPPYSSTQDQVVPQMEKIAVEDEDERDHPMSP 120

Query: 121 LN 122
           LN
Sbjct: 121 LN 122

[Close]

BLAST of Chy6G114610 vs. NCBI nr
Match: XP_038882732.1 (uncharacterized protein LOC120073889 isoform X1 [Benincasa hispida])

HSP 1 Score: 192 bits (487), Expect = 1.27e-60
Identity = 101/124 (81.45%), Postives = 112/124 (90.32%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAH-RRRLRLDRLLPDTADSTLD 60
           MESHVQF++TGP WTNEKHMHFLNS+EASFV+SMF+NR H RRRLRLDR LPDTADSTLD
Sbjct: 1   MESHVQFSETGPFWTNEKHMHFLNSMEASFVQSMFENRNHHRRRLRLDRHLPDTADSTLD 60

Query: 61  SPH-NHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRADEDEDERDHPM 120
           SP  + TKNH TS + RINGRS+RRSRRISS P+TSTQDQVVPQ+EKRA EDEDERDHPM
Sbjct: 61  SPQKDDTKNHATSEAVRINGRSSRRSRRISSLPHTSTQDQVVPQIEKRAVEDEDERDHPM 120

Query: 121 SPLN 122
           SP+N
Sbjct: 121 SPVN 124

[Close]

BLAST of Chy6G114610 vs. NCBI nr
Match: XP_038882735.1 (uncharacterized protein LOC120073889 isoform X2 [Benincasa hispida])

HSP 1 Score: 188 bits (477), Expect = 4.10e-59
Identity = 101/124 (81.45%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAH-RRRLRLDRLLPDTADSTLD 60
           MESHVQF++TGP WTNEKHMHFLNS+EASFV+SMF+NR H RRRLRLDR LPDTADSTLD
Sbjct: 1   MESHVQFSETGPFWTNEKHMHFLNSMEASFVQSMFENRNHHRRRLRLDRHLPDTADSTLD 60

Query: 61  SPH-NHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRADEDEDERDHPM 120
           SP  + TKNH TS   RINGRS+RRSRRISS P+TSTQDQVVPQ+EKRA EDEDERDHPM
Sbjct: 61  SPQKDDTKNHATSA-VRINGRSSRRSRRISSLPHTSTQDQVVPQIEKRAVEDEDERDHPM 120

Query: 121 SPLN 122
           SP+N
Sbjct: 121 SPVN 123

[Close]

BLAST of Chy6G114610 vs. NCBI nr
Match: XP_022141184.1 (uncharacterized protein LOC111011640 [Momordica charantia])

HSP 1 Score: 184 bits (467), Expect = 3.16e-57
Identity = 96/123 (78.05%), Postives = 105/123 (85.37%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRR-LRLDRLLPDTADSTLD 60
           MESHVQF +TG  WTNEKHMHFLNS+EASFVRSMF+NR HRRR LRLDR LPDT+DSTLD
Sbjct: 27  MESHVQFNETGSCWTNEKHMHFLNSMEASFVRSMFENRTHRRRRLRLDRHLPDTSDSTLD 86

Query: 61  SPHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRADEDEDERDHPMS 120
           SP    KNH TSG+A I+GRS+ RSR  SS P+TS QDQVVPQMEKRA EDEDERDHPMS
Sbjct: 87  SPQKDRKNHATSGAATIDGRSSSRSRTRSSLPHTSNQDQVVPQMEKRAVEDEDERDHPMS 146

Query: 121 PLN 122
           P+N
Sbjct: 147 PIN 149

The following BLAST results are available for this feature:

BLAST of Chy6G114610 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G114610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5V0	7.0e-60	98.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181960 PE=4 SV=1	[more]
A0A1S3AYV4	4.7e-56	93.44	uncharacterized protein LOC103484063 OS=Cucumis melo OX=3656 GN=LOC103484063 PE=...	[more]
A0A6J1CHV7	2.0e-43	78.05	uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1JBA6	3.0e-42	75.41	uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1J606	5.0e-42	76.23	uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Chy6G114610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140781.1	2.96e-79	98.36	uncharacterized protein LOC101217506 [Cucumis sativus] >KGN57360.1 hypothetical ...	[more]
XP_008439192.1	3.20e-74	93.44	PREDICTED: uncharacterized protein LOC103484063 [Cucumis melo]	[more]
XP_038882732.1	1.27e-60	81.45	uncharacterized protein LOC120073889 isoform X1 [Benincasa hispida]	[more]
XP_038882735.1	4.10e-59	81.45	uncharacterized protein LOC120073889 isoform X2 [Benincasa hispida]	[more]
XP_022141184.1	3.16e-57	78.05	uncharacterized protein LOC111011640 [Momordica charantia]	[more]

BLAST of Chy6G114610 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..122
None	No IPR available	PANTHER	PTHR33676:SF15	SUBFAMILY NOT NAMED	coord: 1..116
IPR044678	Cold-regulated protein 27/28	PANTHER	PTHR33676	COLD REGULATED PROTEIN 27	coord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G114610.1	Chy6G114610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042752	regulation of circadian rhythm
biological_process	GO:0009409	response to cold