Chy6G112960 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G112960
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH06: 5311571 .. 5312020 (-)
RNA-Seq Expression	Chy6G112960
Synteny	Chy6G112960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACGCCCCAAGTTTCCGGTGGCCGGAATTCAGTTTGTGGCTGCGGCCTGCGTCGTTCGGTTGGCCGGATTTCAGTTTCTCAAACTTCAGCATCGAGTGGAACTCTCCCAACATCAGGTGGTTTAATTTTTCAATTCTCGATGATCTCTTATGGACCTTCATCGCTCTTCTCGAATCCCTAGTTCTTCTTACAATGTTGTGCTGTTTCTTCTTGTGCTGTGGATTCACTCTCTGATTTTCTCAATTACCCATTTAGTATGTTGTGTATATATATATATGTATATTCCTTTTCATCGATTTCAAAATCTTAGCAATTAGTTATATCCTCTGTAGTTTTACTGTTTTGCGTCAAGTGTAATTTGATGGTTTCGTTCTTCATCTTTCATCGATTTGTGGCCGGAATCCCTAACTAGAATTGGAAAGCCTCGGATAATTGAATCGATGTGA

mRNA sequence

ATGGTACGCCCCAAGTTTCCGGTGGCCGGAATTCAGTTTGTGGCTGCGGCCTGCGTCGTTCGGTTGGCCGGATTTCAGTTTCTCAAACTTCAGCATCGAGTGGAACTCTCCCAACATCAGTTCTTCTTACAATGTTGTGCTGTTTCTTCTTGTGCTGTGGATTCACTCTCTGATTTTCTCAATTACCCATTTATTTTACTGTTTTGCGTCAAGTGTAATTTGATGGTTTCGTTCTTCATCTTTCATCGATTTGTGGCCGGAATCCCTAACTAGAATTGGAAAGCCTCGGATAATTGAATCGATGTGA

Coding sequence (CDS)

ATGGTACGCCCCAAGTTTCCGGTGGCCGGAATTCAGTTTGTGGCTGCGGCCTGCGTCGTTCGGTTGGCCGGATTTCAGTTTCTCAAACTTCAGCATCGAGTGGAACTCTCCCAACATCAGTTCTTCTTACAATGTTGTGCTGTTTCTTCTTGTGCTGTGGATTCACTCTCTGATTTTCTCAATTACCCATTTATTTTACTGTTTTGCGTCAAGTGTAATTTGATGGTTTCGTTCTTCATCTTTCATCGATTTGTGGCCGGAATCCCTAACTAGAATTGGAAAGCCTCGGATAATTGAATCGATGTGA

Protein sequence

MVRPKFPVAGIQFVAAACVVRLAGFQFLKLQHRVELSQHQFFLQCCAVSSCAVDSLSDFLNYPFILLFCVKCNLMVSFFIFHRFVAGIPN*NWKASDN*IDVX

Homology

[Close]

BLAST of Chy6G112960 vs. ExPASy TrEMBL
Match: A0A0A0LAS1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G168920 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.7e-36
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MVRPKFPVAGIQFVAAACVVRLAGFQFLKLQHRVELSQHQFFLQCCAVSSCAVDSLSDFL 60
          MVRPKFPVAGI+FVAAACVV+LAGFQFLKLQHRVELSQHQFFLQCCAVSSCAVDSLSDFL
Sbjct: 1  MVRPKFPVAGIRFVAAACVVQLAGFQFLKLQHRVELSQHQFFLQCCAVSSCAVDSLSDFL 60

Query: 61 NYPFILLFCVKCNLMVSFFIF 82
          NYPFILLFCVKCNLMVSFFIF
Sbjct: 61 NYPFILLFCVKCNLMVSFFIF 81

[Close]

BLAST of Chy6G112960 vs. NCBI nr
Match: KGN57181.1 (hypothetical protein Csa_010213 [Cucumis sativus])

HSP 1 Score: 162 bits (409), Expect = 2.12e-49
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MVRPKFPVAGIQFVAAACVVRLAGFQFLKLQHRVELSQHQFFLQCCAVSSCAVDSLSDFL 60
          MVRPKFPVAGI+FVAAACVV+LAGFQFLKLQHRVELSQHQFFLQCCAVSSCAVDSLSDFL
Sbjct: 1  MVRPKFPVAGIRFVAAACVVQLAGFQFLKLQHRVELSQHQFFLQCCAVSSCAVDSLSDFL 60

Query: 61 NYPFILLFCVKCNLMVSFFIF 81
          NYPFILLFCVKCNLMVSFFIF
Sbjct: 61 NYPFILLFCVKCNLMVSFFIF 81

The following BLAST results are available for this feature:

BLAST of Chy6G112960 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G112960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAS1	2.7e-36	97.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G168920 PE=4 SV=1	[more]

BLAST of Chy6G112960 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57181.1	2.12e-49	97.53	hypothetical protein Csa_010213 [Cucumis sativus]	[more]

BLAST of Chy6G112960 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..18 score: 6.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G112960.1	Chy6G112960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane