Chy6G112300 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G112300
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	translocator protein homolog
Location	chrH06: 4787441 .. 4788157 (+)
RNA-Seq Expression	Chy6G112300
Synteny	Chy6G112300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTCTTGGAAGAAGAAGAAATTTCGCCATGCAGATGCAACGGAAGGTCCTTAAGAAAAAAACACCTGAATTTTCTCCGTAACGTTCAATCTTCCTTTTAATATCTCAAATTTCATTCCCGTTTTTCGCCCTAATTTTTCCAATTCCCTCTTTTCAGAATCTCCCAATCCTCTCTCTCTCTCTCTCAAATCAACAATGGCTTCTTCCAATCCCCCGTTCAAATCCCGACCAGAATCCAAATACACCAAGGCCAAGAGAGCTCTCCGTTCTCTCGCCGTTTCCGTCGCCATTCCTGTTTCCCTCACAATCGCCGTCATCTTCCTCTTTGGCCGCTCCTCTCGCCATTACCCCAACCGTAACCGTCCGATTTGGATAGGGCCACTCTGGCTCATCCAACTTTCCTCCATTGGCTCCTCCTTTCTGGTTGGCCTCGCAGCTTGGCTCGTTTGGGCGGACGGTGGTTTCCATGGCGGTTCCAATGCTCTTCCCCTCTACATCGCGCACCTTTCTCTCAGCGTCGTTTGGAATCCTCTGGTGCTTGTGATTCGGTCTGTGGTGATTGCGTTTTTGTTCTGTGTTTTGGATTGTGTGACTCTGTTTGCTTGTTATCGGGCGTTCAAGCGAGTTAATCCTTTTGCTAAGGATCTGATGAAGCCATGTTTGGCTTGGACTGCGTATCTCTCTGCTGTTACGTATGTGTTCATTGATCTTTGA

mRNA sequence

ATGCATTCTTGGAAGAAGAAGAAATTTCGCCATGCAGATGCAACGGAAGAATCTCCCAATCCTCTCTCTCTCTCTCTCAAATCAACAATGGCTTCTTCCAATCCCCCGTTCAAATCCCGACCAGAATCCAAATACACCAAGGCCAAGAGAGCTCTCCGTTCTCTCGCCGTTTCCGTCGCCATTCCTGTTTCCCTCACAATCGCCGTCATCTTCCTCTTTGGCCGCTCCTCTCGCCATTACCCCAACCGTAACCGTCCGATTTGGATAGGGCCACTCTGGCTCATCCAACTTTCCTCCATTGGCTCCTCCTTTCTGGTTGGCCTCGCAGCTTGGCTCGTTTGGGCGGACGGTGGTTTCCATGGCGGTTCCAATGCTCTTCCCCTCTACATCGCGCACCTTTCTCTCAGCGTCGTTTGGAATCCTCTGGTGCTTGTGATTCGGTCTGTGGTGATTGCGTTTTTGTTCTGTGTTTTGGATTGTGTGACTCTGTTTGCTTGTTATCGGGCGTTCAAGCGAGTTAATCCTTTTGCTAAGGATCTGATGAAGCCATGTTTGGCTTGGACTGCGTATCTCTCTGCTGTTACGTATGTGTTCATTGATCTTTGA

Coding sequence (CDS)

ATGCATTCTTGGAAGAAGAAGAAATTTCGCCATGCAGATGCAACGGAAGAATCTCCCAATCCTCTCTCTCTCTCTCTCAAATCAACAATGGCTTCTTCCAATCCCCCGTTCAAATCCCGACCAGAATCCAAATACACCAAGGCCAAGAGAGCTCTCCGTTCTCTCGCCGTTTCCGTCGCCATTCCTGTTTCCCTCACAATCGCCGTCATCTTCCTCTTTGGCCGCTCCTCTCGCCATTACCCCAACCGTAACCGTCCGATTTGGATAGGGCCACTCTGGCTCATCCAACTTTCCTCCATTGGCTCCTCCTTTCTGGTTGGCCTCGCAGCTTGGCTCGTTTGGGCGGACGGTGGTTTCCATGGCGGTTCCAATGCTCTTCCCCTCTACATCGCGCACCTTTCTCTCAGCGTCGTTTGGAATCCTCTGGTGCTTGTGATTCGGTCTGTGGTGATTGCGTTTTTGTTCTGTGTTTTGGATTGTGTGACTCTGTTTGCTTGTTATCGGGCGTTCAAGCGAGTTAATCCTTTTGCTAAGGATCTGATGAAGCCATGTTTGGCTTGGACTGCGTATCTCTCTGCTGTTACGTATGTGTTCATTGATCTTTGA

Protein sequence

MHSWKKKKFRHADATEESPNPLSLSLKSTMASSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVTLFACYRAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL*

Homology

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BLAST of Chy6G112300 vs. ExPASy Swiss-Prot
Match: O82245 (Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.4e-30
Identity = 70/170 (41.18%), Postives = 98/170 (57.65%), Query Frame = 0


Query: 25  SLKSTMASSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHYPNRN 84
           ++  T   S    K + + K   AKR L+SL V+VA PV +T+   +  G S  +     
Sbjct: 20  AMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAAPVLVTLFATYFLGTSDGYGNRAK 79

Query: 85  RPIWIGPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVL 144
              WI PLWL+  + + SS L+GLAAWLVW DGGFH   NAL LY+A   L +VW+P+  
Sbjct: 80  SSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDPVTF 139

Query: 145 VIRSVVIAFLFCVLDCVTLFACYRAFKRVNPFAKDLMKPCLAWTAYLSAV 195
            + S V      +     LF CY+AF  ++P A +L+KPCLAW A+++AV
Sbjct: 140 RVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAV 189

[Close]

BLAST of Chy6G112300 vs. ExPASy Swiss-Prot
Match: Q9GMC9 (Translocator protein OS=Ovis aries OX=9940 GN=TSPO PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.2e-05
Identity = 37/128 (28.91%), Postives = 62/128 (48.44%), Query Frame = 0


Query: 71  FLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGSSFLVGLAAWLVWAD-GGFHGGSNA-LPL 130
           ++ G   R Y +  +P W  P W++          +G  ++L+W + GGF   +   L L
Sbjct: 25  YIRGEGFRWYASLQKPPWHPPRWILAPIWGTLYSAMGYGSYLIWKELGGFSKEAVVPLGL 84

Query: 131 YIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVTLFACYRAFKRVNPFAKDLMKPCLAWT 190
           Y   L+L+  W PL    R +  AF+  +L      A   A+++V+P A  L+ P LAW 
Sbjct: 85  YAGQLALNWAWPPLFFGARQMGWAFVDLLLTGGMAAATAMAWRQVSPPAACLLYPYLAWL 144

Query: 191 AYLSAVTY 197
           A+ + + Y
Sbjct: 145 AFAAMLNY 152

[Close]

BLAST of Chy6G112300 vs. ExPASy Swiss-Prot
Match: E2RDM9 (Translocator protein 2 OS=Canis lupus familiaris OX=9615 GN=TSPO2 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 5.1e-04
Identity = 43/145 (29.66%), Postives = 67/145 (46.21%), Query Frame = 0


Query: 56  AVSVAIPVSLTIAVIFLF-GRSSRHYPNRNRPIWIGPLWLIQLSSIGSSFLVGLAAWLVW 115
           A+ VA+P    I V  L   R  R Y    +P W  P  ++    I   F++G A++LVW
Sbjct: 6   AIFVALPHLGPILVSLLTRHRMIRWYDIPKKPPWCPPHKVLLAGWITIYFVMGYASYLVW 65

Query: 116 AD-GGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVV--IAFLFCVLDCVTLFACYRAFK 175
            D GG  G   ALPL +  + L+V W  L+    +    +A L  +L    + +    + 
Sbjct: 66  KDLGGGFGRPLALPLGLYAVQLAVSWAVLIFFFAAHAHGLALLHMLLLYGLVVSTALIWH 125

Query: 176 RVNPFAKDLMKPCLAWTAYLSAVTY 197
            +N  A  L+ P LAW    +++ Y
Sbjct: 126 PINKLAAVLLLPYLAWLTVTASIAY 150

[Close]

BLAST of Chy6G112300 vs. ExPASy TrEMBL
Match: A0A0A0L583 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154290 PE=3 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 9.0e-89
Identity = 169/172 (98.26%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 30  MASSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHYPNRNRPIWI 89
           M SSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIA IFLFGRSSRHYPNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60

Query: 90  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 149
           GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV
Sbjct: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120

Query: 150 VIAFLFCVLDCVTLFACYRAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 202
           VIAFLFCVLDCVTLFACY AFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL
Sbjct: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 172

[Close]

BLAST of Chy6G112300 vs. ExPASy TrEMBL
Match: A0A5D3CWC4 (Translocator protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001010 PE=3 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 3.2e-86
Identity = 165/172 (95.93%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 30  MASSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHYPNRNRPIWI 89
           M SSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRH+PNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHFPNRNRPIWI 60

Query: 90  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 149
           GPLWL+QLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVW+PLVLVIRSV
Sbjct: 61  GPLWLLQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWSPLVLVIRSV 120

Query: 150 VIAFLFCVLDCVTLFACYRAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 202
           VIAFLFCVLD VTLFACYRAF+RVNPFAKDLMKPCLAWTAYLSAVTYVFI L
Sbjct: 121 VIAFLFCVLDFVTLFACYRAFERVNPFAKDLMKPCLAWTAYLSAVTYVFIHL 172

[Close]

BLAST of Chy6G112300 vs. ExPASy TrEMBL
Match: A0A1S4DTF2 (translocator protein homolog OS=Cucumis melo OX=3656 GN=LOC107990392 PE=3 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 3.2e-86
Identity = 165/172 (95.93%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 30  MASSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHYPNRNRPIWI 89
           M SSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRH+PNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHFPNRNRPIWI 60

Query: 90  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 149
           GPLWL+QLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVW+PLVLVIRSV
Sbjct: 61  GPLWLLQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWSPLVLVIRSV 120

Query: 150 VIAFLFCVLDCVTLFACYRAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 202
           VIAFLFCVLD VTLFACYRAF+RVNPFAKDLMKPCLAWTAYLSAVTYVFI L
Sbjct: 121 VIAFLFCVLDFVTLFACYRAFERVNPFAKDLMKPCLAWTAYLSAVTYVFIHL 172

[Close]

BLAST of Chy6G112300 vs. ExPASy TrEMBL
Match: A0A6J1FZS9 (translocator protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111449384 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 2.0e-80
Identity = 156/180 (86.67%), Postives = 168/180 (93.33%), Query Frame = 0


Query: 22  LSLSLKSTMASSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHYP 81
           LS  L STM SS+PPFKSRPESKYTKAKRALRSLAVSVAIP++LTIAVIFLFGRSSRH+P
Sbjct: 48  LSEILDSTM-SSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFP 107

Query: 82  NRNRPIWIGPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNP 141
           NRNRPIW+ PLWL+ LSSI SSFL+GLAAWLVWADGGFH GSNALPLYIAHLSLSVVWNP
Sbjct: 108 NRNRPIWVAPLWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNP 167

Query: 142 LVLVIRSVVIAFLFCVLDCVTLFACYRAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 201
           LVLVIR+ ++AFLFCVLD VTL+ACYR FKRVNPFAKDL+KPCLAWTAYL AVTYVFIDL
Sbjct: 168 LVLVIRARLLAFLFCVLDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 226

[Close]

BLAST of Chy6G112300 vs. ExPASy TrEMBL
Match: A0A6J1ICB9 (translocator protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111474208 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 7.7e-80
Identity = 150/170 (88.24%), Postives = 163/170 (95.88%), Query Frame = 0


Query: 32  SSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHYPNRNRPIWIGP 91
           SS+PPFKSRPESKYTKAKRALRSLAVSVAIP++LTIAVIFLFGRSSRH+PNRNRPIW+ P
Sbjct: 2   SSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAP 61

Query: 92  LWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVI 151
           LWL+ LSSI SSFL+GLAAWLVWADGGFH GSNALPLYIAHLSLSVVWNPLVLVIR++++
Sbjct: 62  LWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRALLL 121

Query: 152 AFLFCVLDCVTLFACYRAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 202
           AFLFCVLD VTL+ACYR FKRVNPFAKDL+KPCLAWTAYL AVTYVFIDL
Sbjct: 122 AFLFCVLDFVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 171

[Close]

BLAST of Chy6G112300 vs. NCBI nr
Match: XP_004134488.1 (translocator protein homolog [Cucumis sativus])

HSP 1 Score: 337 bits (864), Expect = 5.25e-116
Identity = 169/172 (98.26%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 30  MASSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHYPNRNRPIWI 89
           M SSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIA IFLFGRSSRHYPNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60

Query: 90  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 149
           GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV
Sbjct: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120

Query: 150 VIAFLFCVLDCVTLFACYRAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 201
           VIAFLFCVLDCVTLFACY AFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL
Sbjct: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 172

[Close]

BLAST of Chy6G112300 vs. NCBI nr
Match: XP_016898980.1 (PREDICTED: translocator protein homolog [Cucumis melo] >KAA0049494.1 translocator protein-like protein [Cucumis melo var. makuwa] >TYK16173.1 translocator protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 328 bits (842), Expect = 1.18e-112
Identity = 165/172 (95.93%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 30  MASSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHYPNRNRPIWI 89
           M SSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRH+PNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHFPNRNRPIWI 60

Query: 90  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 149
           GPLWL+QLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVW+PLVLVIRSV
Sbjct: 61  GPLWLLQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWSPLVLVIRSV 120

Query: 150 VIAFLFCVLDCVTLFACYRAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 201
           VIAFLFCVLD VTLFACYRAF+RVNPFAKDLMKPCLAWTAYLSAVTYVFI L
Sbjct: 121 VIAFLFCVLDFVTLFACYRAFERVNPFAKDLMKPCLAWTAYLSAVTYVFIHL 172

[Close]

BLAST of Chy6G112300 vs. NCBI nr
Match: XP_038878873.1 (translocator protein homolog [Benincasa hispida])

HSP 1 Score: 327 bits (838), Expect = 4.82e-112
Identity = 161/172 (93.60%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 30  MASSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHYPNRNRPIWI 89
           M+SSNPPFKSRPESKYTKAKRALRSLAVSVAIP+SLTIAVIFLFGRS+RH+PNRNRPIWI
Sbjct: 1   MSSSNPPFKSRPESKYTKAKRALRSLAVSVAIPLSLTIAVIFLFGRSARHFPNRNRPIWI 60

Query: 90  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 149
           GPLWL+ LSSIGSSFL+GLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV
Sbjct: 61  GPLWLLHLSSIGSSFLIGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120

Query: 150 VIAFLFCVLDCVTLFACYRAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 201
           V+AFLFCVLD VTLFACYR FKRVNPFAKDL+KPCLAWTAYLSAVTYVFIDL
Sbjct: 121 VLAFLFCVLDFVTLFACYRTFKRVNPFAKDLIKPCLAWTAYLSAVTYVFIDL 172

[Close]

BLAST of Chy6G112300 vs. NCBI nr
Match: KGN57143.2 (hypothetical protein Csa_010693 [Cucumis sativus])

HSP 1 Score: 325 bits (834), Expect = 1.71e-111
Identity = 163/166 (98.19%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 30  MASSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHYPNRNRPIWI 89
           M SSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIA IFLFGRSSRHYPNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60

Query: 90  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 149
           GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV
Sbjct: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120

Query: 150 VIAFLFCVLDCVTLFACYRAFKRVNPFAKDLMKPCLAWTAYLSAVT 195
           VIAFLFCVLDCVTLFACY AFKRVNPFAKDLMKPCLAWTAYLSAVT
Sbjct: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT 166

[Close]

BLAST of Chy6G112300 vs. NCBI nr
Match: XP_023540366.1 (translocator protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 311 bits (796), Expect = 7.90e-105
Identity = 155/180 (86.11%), Postives = 170/180 (94.44%), Query Frame = 0


Query: 22  LSLSLKSTMASSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHYP 81
           L+ +L STM+SS PPFKSRPESKYTKAKRALRSLAVSVAIP++LTIAVIFLFGRSSRH+P
Sbjct: 48  LTETLDSTMSSS-PPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFP 107

Query: 82  NRNRPIWIGPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNP 141
           NRNRPIW+ PLWL+ LSSI SSFL+GLAAWLVWADGGFH GSNALPLYIAHLSLSVVWNP
Sbjct: 108 NRNRPIWVAPLWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNP 167

Query: 142 LVLVIRSVVIAFLFCVLDCVTLFACYRAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 201
           LVLVIR++++AFLFCVLD VTL+ACYR FKRVNPFAKDL+KPCLAWTAYL AVTYVFIDL
Sbjct: 168 LVLVIRALLLAFLFCVLDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 226

[Close]

BLAST of Chy6G112300 vs. TAIR 10
Match: AT2G47770.1 (TSPO(outer membrane tryptophan-rich sensory protein)-related )

HSP 1 Score: 132.5 bits (332), Expect = 3.8e-31
Identity = 70/170 (41.18%), Postives = 98/170 (57.65%), Query Frame = 0


Query: 25  SLKSTMASSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHYPNRN 84
           ++  T   S    K + + K   AKR L+SL V+VA PV +T+   +  G S  +     
Sbjct: 20  AMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAAPVLVTLFATYFLGTSDGYGNRAK 79

Query: 85  RPIWIGPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVL 144
              WI PLWL+  + + SS L+GLAAWLVW DGGFH   NAL LY+A   L +VW+P+  
Sbjct: 80  SSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDPVTF 139

Query: 145 VIRSVVIAFLFCVLDCVTLFACYRAFKRVNPFAKDLMKPCLAWTAYLSAV 195
            + S V      +     LF CY+AF  ++P A +L+KPCLAW A+++AV
Sbjct: 140 RVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAV 189

The following BLAST results are available for this feature:

BLAST of Chy6G112300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82245	5.4e-30	41.18	Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1	[more]
Q9GMC9	1.2e-05	28.91	Translocator protein OS=Ovis aries OX=9940 GN=TSPO PE=1 SV=1	[more]
E2RDM9	5.1e-04	29.66	Translocator protein 2 OS=Canis lupus familiaris OX=9615 GN=TSPO2 PE=1 SV=1	[more]

BLAST of Chy6G112300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L583	9.0e-89	98.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154290 PE=3 SV=1	[more]
A0A5D3CWC4	3.2e-86	95.93	Translocator protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S4DTF2	3.2e-86	95.93	translocator protein homolog OS=Cucumis melo OX=3656 GN=LOC107990392 PE=3 SV=1	[more]
A0A6J1FZS9	2.0e-80	86.67	translocator protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111449384 PE=3 ...	[more]
A0A6J1ICB9	7.7e-80	88.24	translocator protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111474208 PE=3 SV...	[more]

BLAST of Chy6G112300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134488.1	5.25e-116	98.26	translocator protein homolog [Cucumis sativus]	[more]
XP_016898980.1	1.18e-112	95.93	PREDICTED: translocator protein homolog [Cucumis melo] >KAA0049494.1 translocato...	[more]
XP_038878873.1	4.82e-112	93.60	translocator protein homolog [Benincasa hispida]	[more]
KGN57143.2	1.71e-111	98.19	hypothetical protein Csa_010693 [Cucumis sativus]	[more]
XP_023540366.1	7.90e-105	86.11	translocator protein homolog [Cucurbita pepo subsp. pepo]	[more]

BLAST of Chy6G112300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47770.1	3.8e-31	41.18	TSPO(outer membrane tryptophan-rich sensory protein)-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038330	TspO/MBR-related superfamily	GENE3D	1.20.1260.100	TspO/MBR protein	coord: 49..201 e-value: 9.3E-22 score: 79.3
IPR004307	TspO/MBR-related protein	PFAM	PF03073	TspO_MBR	coord: 58..197 e-value: 1.6E-20 score: 73.5
IPR004307	TspO/MBR-related protein	PANTHER	PTHR10057	PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR	coord: 32..200
IPR004307	TspO/MBR-related protein	CDD	cd15904	TSPO_MBR	coord: 55..199 e-value: 1.11357E-25 score: 94.8712
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	PANTHER	PTHR10057:SF6	TSPO/MBR FAMILY PROTEIN	coord: 32..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G112300.1	Chy6G112300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane