Chy6G110880 (gene) Cucumber (hystrix) v1

Overview
NameChy6G110880
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH06: 3838211 .. 3838629 (+)
RNA-Seq ExpressionChy6G110880
SyntenyChy6G110880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCTAAGGCACAAATATCACATTCAATATACTTTAGGATATTTGAGTCTTTTGAAGCGTTTAGCGAGGAAACGAGAATTTGCTTGTAGTCAATCTTGGTCCCCCGACTATAAGTACTATCAAAACATTAATATTCCTTTTCTTAAGGTTGGATATTCATTTTTTTTTCTACTTCCACTTATGTCGTTGTACTAAAAAGACACATTGCAACTATTAATTAAACTTAAAACCAATGAGATCAAGCTAGCATCTAAAGTTATGACCGTGTTGATTTGTTCATCATGTAAGATTTATAAAATATGTTGATTAATTTATATCTTTTTTTTGCATAGAAAAAAGAAAAAAATATTTTCCACCGAATCGTAATTCTAACATTTCTATCAACTATTTTATGAAGCCTCTCGTTATGGAACAAAAAC

mRNA sequence

ATCCTAAGGCACAAATATCACATTCAATATACTTTAGGATATTTGAGTCTTTTGAAGCGTTTAGCGAGGAAACGAGAATTTGCTTGTAGTCAATCTTGGTCCCCCGACTATAAGTACTATCAAAACATTAATATTCCTTTTCTTAAGAAAAAAGAAAAAAATATTTTCCACCGAATCGTAATTCTAACATTTCTATCAACTATTTTATGAAGCCTCTCGTTATGGAACAAAAAC

Coding sequence (CDS)

ATCCTAAGGCACAAATATCACATTCAATATACTTTAGGATATTTGAGTCTTTTGAAGCGTTTAGCGAGGAAACGAGAATTTGCTTGTAGTCAATCTTGGTCCCCCGACTATAAGTACTATCAAAACATTAATATTCCTTTTCTTAAGAAAAAAGAAAAAAATATTTTCCACCGAATCGTAATTCTAACATTTCTATCAACTATTTTATGAAGCCTCTCGTTATGGAACAAAAAC

Protein sequence

ILRHKYHIQYTLGYLSLLKRLARKREFACSQSWSPDYKYYQNINIPFLKKKEKNIFHRIVILTFLSTIL*SLSLWNKN
Homology
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BLAST of Chy6G110880 vs. NCBI nr
Match: KAE8650350.1 (hypothetical protein Csa_010343, partial [Cucumis sativus])

HSP 1 Score: 107 bits (267), Expect = 1.74e-28
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 0 

Query: 1  ILRHKYHIQYTLGYLSLLKRLARKREFACSQSWSPDYKYYQNINIPFLKKKEKNIFHRIV 60
          +L HK HIQYTLGY SLLKRL R+RE A SQSWSPDYK  +NINIPFL+KKEKNIFHRI+
Sbjct: 1  MLGHKCHIQYTLGYSSLLKRLGRERELAYSQSWSPDYKCDRNINIPFLEKKEKNIFHRII 60

Query: 61 ILTFLS 66
          ILTFLS
Sbjct: 61 ILTFLS 66

The following BLAST results are available for this feature:
BLAST of Chy6G110880 vs.
Match NameE-valueIdentityDescription
BLAST of Chy6G110880 vs.
Match NameE-valueIdentityDescription
BLAST of Chy6G110880 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650350.11.74e-2880.30hypothetical protein Csa_010343, partial [Cucumis sativus][more]
BLAST of Chy6G110880 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy6G110880.1Chy6G110880.1mRNA