Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTCTGTTCTTCCCTCCCCGTTCTTTCTTTCAATCCAATCCCCAAAATCATCTTCAAAACTTCTGAAATTATTAGTGCTACACCGTTTTCGATTCAAAAGATTCCGGGAACCAACGGAATCTCCTCCTCCAACTTGCTTGGAAAATTGACGAGTAGAAGCCTCTCCCGGCGGCTCAATGCCGCAGGATTGTCCGAGATTGAACCCGATTTAAACGAAGACCCTGTAGATCGTTGGGAAACTAACAGCGTCAGCCCTGTATGAACCGCTCTCCTTGTGCTCTCTCTCTCTGCTTCATTAACTCTCTGATTTTCTTGTGTTTTAGGTTTTCAAGTTATGAGTTGTGATGAGTTTATTTGGATTCACTGATTTAAATTAAGATTAAATTCAATTTCAGTTAATTTAGGGACGGAGATGTTGATAATTTTGTGTTTCGTTTCATAGGAAGATTTTGAGTATGGAGTATACGATGGACATCACACTTACTTTGAAGGGGAGAAGAAAGGTTAGTTCTGTAACATATGCAACTGGGTTTATTTTCGTTCCTTGCTTGGGAGAATATTTTAAATTTGGATGCTATGATCTACCAGAACTTGTTTCTGTTTTGGATTAAGTCTGCTGTTTAGACTGAGTGGAATGTACATTTAATCCATGGAATTATTGGAGCCCTTAGTTCTCTGATTTAGGCATTCCAAGCATGGAATTTTGCTTTCCCATAAGCCCTTAAGATCTAATTTCGTGAGTTTTTTAGTATAGAGTTCACATTTCTCAATCCATGTGCCATCACAGTCGAGCCAAGGTGAAACTGATTACAATCAATCTCACCCAGACTGTGTACCAAATGACTCTTTTAGCATAGTGAGAAAAGGGTTTTAACTAATTAAAAACACTATGGAACTTCTCAGGATGTTTGTTAGATACTAGAAGTAATTTTGAAAATGTTAAAGATCACCTACAACCGAGCCAATGTTTTGATCTTTTCCTAAAGTACTTCATTTGCACTTCCTTTAGAAGTTATCCCGAACTAACTCTTAGTCAAATTGAGAAGTTGATGGTAACTTTGGTATCAGTTTTTGCATCTCTTTAAGCAGTACCGACGACTAGAAATACTGACCAACTTGTGCTGGTAGTAGGGATATTTATCTCCTTGCTAATTCATTTGGCTAGTAAATTCTGGTACTGATTACTTTTCACTGGCTACTTCTTTATAGGAACATTCTGGGGCGCCATTGCAGATGATATTGCTGCAGTTGGACCCCCAACAGGCTTTCAGGGTAAACTATTGTCGCTCTTTCATAACTCAATCCTCTAATTTCAACACTCATTTTATTATTATCACATTTTACATTCTTGGCAGGCCTCATCTCTTGGCTCTTCCTACCGGCAGTTGCTGCTGGAATGTACTTCAATGTTCCGGTACTTTCAAGCATATTTTAGAGTGATTTTTGAAATGGTTAAAATCGCTTAATAATGTCTACTCTATGAAAGTAGCATTTAAGTGAGATATATCTTAAAATGTCATTTATCTTCTTCTTCTAAGCCATTGTCGAGGACACTTGGTTGGTTCTTATTGGACTGTATTTCAGGGGGAGTACCTATACATTGGAGCAGCTATATTTACAATAGTATTCTGCATAATTGAAATTGACAAGCCAGACCAGCCACACAACTTCGAACCTCAGATATATAACATGGAGAGAGGGGCTCGTGACAAGTTGATATCAGACTACAACACCATGGACATCTGGGAATTCAATGAGAAGTATGGAGACTTGTGGGATTTCACTGTCAAGAACGATGATATAACAAAGACATGA
mRNA sequence
ATGGCTCTCTGTTCTTCCCTCCCCGTTCTTTCTTTCAATCCAATCCCCAAAATCATCTTCAAAACTTCTGAAATTATTAGTGCTACACCGTTTTCGATTCAAAAGATTCCGGGAACCAACGGAATCTCCTCCTCCAACTTGCTTGGAAAATTGACGAGTAGAAGCCTCTCCCGGCGGCTCAATGCCGCAGGATTGTCCGAGATTGAACCCGATTTAAACGAAGACCCTGTAGATCGTTGGGAAACTAACAGCGTCAGCCCTGAAGATTTTGAGTATGGAGTATACGATGGACATCACACTTACTTTGAAGGGGAGAAGAAAGGAACATTCTGGGGCGCCATTGCAGATGATATTGCTGCAGTTGGACCCCCAACAGGCTTTCAGGGCCTCATCTCTTGGCTCTTCCTACCGGCAGTTGCTGCTGGAATGTACTTCAATGTTCCGGGGGAGTACCTATACATTGGAGCAGCTATATTTACAATAGTATTCTGCATAATTGAAATTGACAAGCCAGACCAGCCACACAACTTCGAACCTCAGATATATAACATGGAGAGAGGGGCTCGTGACAAGTTGATATCAGACTACAACACCATGGACATCTGGGAATTCAATGAGAAGTATGGAGACTTGTGGGATTTCACTGTCAAGAACGATGATATAACAAAGACATGA
Coding sequence (CDS)
ATGGCTCTCTGTTCTTCCCTCCCCGTTCTTTCTTTCAATCCAATCCCCAAAATCATCTTCAAAACTTCTGAAATTATTAGTGCTACACCGTTTTCGATTCAAAAGATTCCGGGAACCAACGGAATCTCCTCCTCCAACTTGCTTGGAAAATTGACGAGTAGAAGCCTCTCCCGGCGGCTCAATGCCGCAGGATTGTCCGAGATTGAACCCGATTTAAACGAAGACCCTGTAGATCGTTGGGAAACTAACAGCGTCAGCCCTGAAGATTTTGAGTATGGAGTATACGATGGACATCACACTTACTTTGAAGGGGAGAAGAAAGGAACATTCTGGGGCGCCATTGCAGATGATATTGCTGCAGTTGGACCCCCAACAGGCTTTCAGGGCCTCATCTCTTGGCTCTTCCTACCGGCAGTTGCTGCTGGAATGTACTTCAATGTTCCGGGGGAGTACCTATACATTGGAGCAGCTATATTTACAATAGTATTCTGCATAATTGAAATTGACAAGCCAGACCAGCCACACAACTTCGAACCTCAGATATATAACATGGAGAGAGGGGCTCGTGACAAGTTGATATCAGACTACAACACCATGGACATCTGGGAATTCAATGAGAAGTATGGAGACTTGTGGGATTTCACTGTCAAGAACGATGATATAACAAAGACATGA
Protein sequence
MALCSSLPVLSFNPIPKIIFKTSEIISATPFSIQKIPGTNGISSSNLLGKLTSRSLSRRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAVGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT*
Homology
BLAST of Chy6G110520 vs. ExPASy Swiss-Prot
Match:
Q9FG89 (Photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB5 PE=2 SV=1)
HSP 1 Score: 274.6 bits (701), Expect = 9.7e-73
Identity = 123/167 (73.65%), Postives = 150/167 (89.82%), Query Frame = 0
Query: 56 LSRRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGE-KKGTFWGAI 115
L++ ++AAGLS+IEPD+NEDP+ ++ETNS+ EDF+YG YDG HTY+EGE +KGTFWGAI
Sbjct: 43 LAKLVSAAGLSQIEPDINEDPIGQFETNSIEMEDFKYGYYDGAHTYYEGEVQKGTFWGAI 102
Query: 116 ADDIAAVGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQP 175
ADDIAAV GFQGLIS +FLPA+A GMYF+ PGEYL+IGAA+FT+VFCIIE+DKPDQP
Sbjct: 103 ADDIAAVDQTNGFQGLISCMFLPAIALGMYFDAPGEYLFIGAALFTVVFCIIEMDKPDQP 162
Query: 176 HNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDI 222
HNFEPQIY +ERGARDKLI+DYNTM IW+FN+KYGD+WDFT++ DDI
Sbjct: 163 HNFEPQIYKLERGARDKLINDYNTMSIWDFNDKYGDVWDFTIEKDDI 209
BLAST of Chy6G110520 vs. ExPASy TrEMBL
Match:
A0A0A0L8H7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144120 PE=4 SV=1)
HSP 1 Score: 448.4 bits (1152), Expect = 1.8e-122
Identity = 218/224 (97.32%), Postives = 220/224 (98.21%), Query Frame = 0
Query: 1 MALCSSLPVLSFNPIPKIIFKTSEIISATPFSIQKIPGTNGISSSNLLGKLTSRSLSRRL 60
MALCSSLPVLSFNPIPKIIFK+SEIISATPFSI+KI GTNGISSS LLGKLT RSLS RL
Sbjct: 1 MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRL 60
Query: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA
Sbjct: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
Query: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ
Sbjct: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
Query: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 225
IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Sbjct: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 224
BLAST of Chy6G110520 vs. ExPASy TrEMBL
Match:
A0A5A7U0K2 (Photosynthetic NDH subunit of subcomplex B 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00970 PE=4 SV=1)
HSP 1 Score: 431.8 bits (1109), Expect = 1.8e-117
Identity = 212/224 (94.64%), Postives = 216/224 (96.43%), Query Frame = 0
Query: 1 MALCSSLPVLSFNPIPKIIFKTSEIISATPFSIQKIPGTNGISSSNLLGKLTSRSLSRRL 60
MA SSLPVLSFNPIPKIIF +SEI++A PFSIQ I G+NGISSS LLGKLT RSLSRRL
Sbjct: 1 MASSSSLPVLSFNPIPKIIFGSSEIVAA-PFSIQTIQGSNGISSSKLLGKLTRRSLSRRL 60
Query: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA
Sbjct: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
Query: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ
Sbjct: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
Query: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 225
IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Sbjct: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 223
BLAST of Chy6G110520 vs. ExPASy TrEMBL
Match:
A0A1S3AXF4 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483655 PE=4 SV=1)
HSP 1 Score: 431.4 bits (1108), Expect = 2.3e-117
Identity = 212/224 (94.64%), Postives = 216/224 (96.43%), Query Frame = 0
Query: 1 MALCSSLPVLSFNPIPKIIFKTSEIISATPFSIQKIPGTNGISSSNLLGKLTSRSLSRRL 60
MA SSLPVLSFNPIPKIIF +SEI++A PFSIQ I G+NGISSS LLGKLT RSLSRRL
Sbjct: 1 MASSSSLPVLSFNPIPKIIFGSSEIVAA-PFSIQTIRGSNGISSSKLLGKLTRRSLSRRL 60
Query: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA
Sbjct: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
Query: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ
Sbjct: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
Query: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 225
IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Sbjct: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 223
BLAST of Chy6G110520 vs. ExPASy TrEMBL
Match:
A0A6J1IBC3 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473099 PE=4 SV=1)
HSP 1 Score: 407.9 bits (1047), Expect = 2.7e-110
Identity = 198/223 (88.79%), Postives = 206/223 (92.38%), Query Frame = 0
Query: 1 MALCSSLPVLSFNPIPKIIFKTSEIISATPFSIQKIPGTNGISSSNLLGKLTSRSLSRRL 60
MALCSSLPVLSFNP+PKIIFK+S ISAT FS + IPG NGIS++ LLGK S RRL
Sbjct: 1 MALCSSLPVLSFNPLPKIIFKSSG-ISATAFSNRSIPGINGISAAKLLGKSARGSRLRRL 60
Query: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
NAAGLSEIEPDLNEDPVDRWETNSVS EDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA
Sbjct: 61 NAAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
Query: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
VGPPTGFQG ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIE+DKPDQPHNFEPQ
Sbjct: 121 VGPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQ 180
Query: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 224
IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK
Sbjct: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 222
BLAST of Chy6G110520 vs. ExPASy TrEMBL
Match:
A0A6J1GAI7 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452262 PE=4 SV=1)
HSP 1 Score: 406.0 bits (1042), Expect = 1.0e-109
Identity = 197/223 (88.34%), Postives = 205/223 (91.93%), Query Frame = 0
Query: 1 MALCSSLPVLSFNPIPKIIFKTSEIISATPFSIQKIPGTNGISSSNLLGKLTSRSLSRRL 60
MALCSSLPVLSFNP+PKIIFK+S I AT FS + IPG NGIS++ LLGK S RRL
Sbjct: 1 MALCSSLPVLSFNPLPKIIFKSSG-IRATAFSNRSIPGINGISAAKLLGKSARGSRLRRL 60
Query: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
NAAGLSEIEPDLNEDPVDRWETNSVS EDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA
Sbjct: 61 NAAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
Query: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
VGPPTGFQG ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIE+DKPDQPHNFEPQ
Sbjct: 121 VGPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQ 180
Query: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 224
IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK
Sbjct: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 222
BLAST of Chy6G110520 vs. NCBI nr
Match:
XP_004134105.1 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucumis sativus] >KGN56922.1 hypothetical protein Csa_009676 [Cucumis sativus])
HSP 1 Score: 448 bits (1152), Expect = 1.05e-158
Identity = 218/224 (97.32%), Postives = 220/224 (98.21%), Query Frame = 0
Query: 1 MALCSSLPVLSFNPIPKIIFKTSEIISATPFSIQKIPGTNGISSSNLLGKLTSRSLSRRL 60
MALCSSLPVLSFNPIPKIIFK+SEIISATPFSI+KI GTNGISSS LLGKLT RSLS RL
Sbjct: 1 MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRL 60
Query: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA
Sbjct: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
Query: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ
Sbjct: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
Query: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 224
IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Sbjct: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 224
BLAST of Chy6G110520 vs. NCBI nr
Match:
KAA0049312.1 (photosynthetic NDH subunit of subcomplex B 5 [Cucumis melo var. makuwa] >TYK17246.1 photosynthetic NDH subunit of subcomplex B 5 [Cucumis melo var. makuwa])
HSP 1 Score: 431 bits (1109), Expect = 3.65e-152
Identity = 212/224 (94.64%), Postives = 216/224 (96.43%), Query Frame = 0
Query: 1 MALCSSLPVLSFNPIPKIIFKTSEIISATPFSIQKIPGTNGISSSNLLGKLTSRSLSRRL 60
MA SSLPVLSFNPIPKIIF +SEI++A PFSIQ I G+NGISSS LLGKLT RSLSRRL
Sbjct: 1 MASSSSLPVLSFNPIPKIIFGSSEIVAA-PFSIQTIQGSNGISSSKLLGKLTRRSLSRRL 60
Query: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA
Sbjct: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
Query: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ
Sbjct: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
Query: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 224
IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Sbjct: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 223
BLAST of Chy6G110520 vs. NCBI nr
Match:
XP_008438595.1 (PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2 [Cucumis melo])
HSP 1 Score: 431 bits (1108), Expect = 5.18e-152
Identity = 212/224 (94.64%), Postives = 216/224 (96.43%), Query Frame = 0
Query: 1 MALCSSLPVLSFNPIPKIIFKTSEIISATPFSIQKIPGTNGISSSNLLGKLTSRSLSRRL 60
MA SSLPVLSFNPIPKIIF +SEI++A PFSIQ I G+NGISSS LLGKLT RSLSRRL
Sbjct: 1 MASSSSLPVLSFNPIPKIIFGSSEIVAA-PFSIQTIRGSNGISSSKLLGKLTRRSLSRRL 60
Query: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA
Sbjct: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
Query: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ
Sbjct: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
Query: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 224
IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Sbjct: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 223
BLAST of Chy6G110520 vs. NCBI nr
Match:
XP_038878594.1 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Benincasa hispida])
HSP 1 Score: 419 bits (1076), Expect = 3.92e-147
Identity = 206/223 (92.38%), Postives = 213/223 (95.52%), Query Frame = 0
Query: 1 MALCSSLPVLSFNPIPKIIFKTSEIISATPFSIQKIPGTNGISSSNLLGKLTSRSLSRRL 60
MA CSSLPVLSFNPIPKIIFK+SEI SAT FS Q IP +NGIS+S LLG LT RSLSRRL
Sbjct: 1 MAPCSSLPVLSFNPIPKIIFKSSEI-SATAFSNQTIPVSNGISASKLLGILTRRSLSRRL 60
Query: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
NAAGLSEIE DLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA
Sbjct: 61 NAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
Query: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
VGPPTGFQG+ISWLFLPAVAAGMYFN+PGEYLYIGAAIFTIVFCIIE+DKPDQPHNFEPQ
Sbjct: 121 VGPPTGFQGVISWLFLPAVAAGMYFNIPGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQ 180
Query: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 223
IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKN+DITK
Sbjct: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNNDITK 222
BLAST of Chy6G110520 vs. NCBI nr
Match:
KAG7028861.1 (Photosynthetic NDH subunit of subcomplex B 5, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 410 bits (1054), Expect = 8.84e-144
Identity = 199/223 (89.24%), Postives = 207/223 (92.83%), Query Frame = 0
Query: 1 MALCSSLPVLSFNPIPKIIFKTSEIISATPFSIQKIPGTNGISSSNLLGKLTSRSLSRRL 60
MALCSSLPVLSFNP+PKIIFK+SEI SAT FS + IPG NGIS++ LLGK S RRL
Sbjct: 1 MALCSSLPVLSFNPLPKIIFKSSEI-SATAFSNRSIPGINGISAAKLLGKSARGSRLRRL 60
Query: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
NAAGLSEIEPDLNEDPVDRWETNSVS EDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA
Sbjct: 61 NAAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
Query: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
VGPPTGFQG ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIE+DKPDQPHNFEPQ
Sbjct: 121 VGPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQ 180
Query: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 223
IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK
Sbjct: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 222
BLAST of Chy6G110520 vs. TAIR 10
Match:
AT5G43750.1 (NAD(P)H dehydrogenase 18 )
HSP 1 Score: 274.6 bits (701), Expect = 6.9e-74
Identity = 123/167 (73.65%), Postives = 150/167 (89.82%), Query Frame = 0
Query: 56 LSRRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGE-KKGTFWGAI 115
L++ ++AAGLS+IEPD+NEDP+ ++ETNS+ EDF+YG YDG HTY+EGE +KGTFWGAI
Sbjct: 43 LAKLVSAAGLSQIEPDINEDPIGQFETNSIEMEDFKYGYYDGAHTYYEGEVQKGTFWGAI 102
Query: 116 ADDIAAVGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQP 175
ADDIAAV GFQGLIS +FLPA+A GMYF+ PGEYL+IGAA+FT+VFCIIE+DKPDQP
Sbjct: 103 ADDIAAVDQTNGFQGLISCMFLPAIALGMYFDAPGEYLFIGAALFTVVFCIIEMDKPDQP 162
Query: 176 HNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDI 222
HNFEPQIY +ERGARDKLI+DYNTM IW+FN+KYGD+WDFT++ DDI
Sbjct: 163 HNFEPQIYKLERGARDKLINDYNTMSIWDFNDKYGDVWDFTIEKDDI 209
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Q9FG89 | 9.7e-73 | 73.65 | Photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Arabidopsis thali... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L8H7 | 1.8e-122 | 97.32 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144120 PE=4 SV=1 | [more] |
| A0A5A7U0K2 | 1.8e-117 | 94.64 | Photosynthetic NDH subunit of subcomplex B 5 OS=Cucumis melo var. makuwa OX=1194... | [more] |
| A0A1S3AXF4 | 2.3e-117 | 94.64 | photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2 OS=Cucumi... | [more] |
| A0A6J1IBC3 | 2.7e-110 | 88.79 | photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 OS=Cucurb... | [more] |
| A0A6J1GAI7 | 1.0e-109 | 88.34 | photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Cucurbita moschat... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_004134105.1 | 1.05e-158 | 97.32 | photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucumis sativus] >K... | [more] |
| KAA0049312.1 | 3.65e-152 | 94.64 | photosynthetic NDH subunit of subcomplex B 5 [Cucumis melo var. makuwa] >TYK1724... | [more] |
| XP_008438595.1 | 5.18e-152 | 94.64 | PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X... | [more] |
| XP_038878594.1 | 3.92e-147 | 92.38 | photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Benincasa hispida] | [more] |
| KAG7028861.1 | 8.84e-144 | 89.24 | Photosynthetic NDH subunit of subcomplex B 5, chloroplastic, partial [Cucurbita ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G43750.1 | 6.9e-74 | 73.65 | NAD(P)H dehydrogenase 18 | [more] |
